Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8292313.1

Orthogroup ID

OG0006171

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 850

Gene Structure 850 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8292313.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 785 bp

tggtgactgctgtggatccagagaagctcgtacccgtctccccaaacatacttgaagacccacagtacccatattatccaggacagagagtaaaggttaggctctcaactgtttccaaatcaactagatggttttgtggtaactggagggaaaatcaagatgaaggaactgtttgttctttggaaggaggtttaatgtatgttgattggcttgcctctgttctcgtaggttgtggttcgaattttcctgctcctccacatctgctggattcaaagaaattgactttggtatcatgtttctctcatgccaattggcagcttggtgactggtgtatgcttgcaattgctgagtgtaaaggtttttcggagcaggcttttcatagaacttctacttgtgagctcactaacaagcaaaacaattcagaaagaggatttaagagaagaaatcctaagtcaaaaattgaggaaatctttgtaatctcaaagacaaagaccaaagttgatgttctgtggcaagatggtagccagtctttggaagtggattcacagacattagttccggtcagtgttgtaaatgatcatgaattttggcctgaacagtttgtccttgaaaagggaacttatgatgatccaaacttgtttagcagccaaaggtggggtgttgtgcgtggtgtggatgcaaaggaacgaacagtaaaggtgcaatggaaaactataactgcacccgaaacaaataatttagagggagagcagatggaggaagttgatggtccagaatcagtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006464 GO:0006807 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0010966 GO:0012505 GO:0015698 GO:0016036 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0030163 GO:0031625 GO:0031667 GO:0031668 GO:0031669 GO:0032446 GO:0032879 GO:0033554 GO:0034762 GO:0034765 GO:0036211 GO:0042592 GO:0042594 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043412 GO:0044070 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0048878 GO:0050789 GO:0050801 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051716 GO:0055062 GO:0055081 GO:0055083 GO:0061630 GO:0061659 GO:0065007 GO:0065008 GO:0070647 GO:0071496 GO:0071704 GO:0072505 GO:0072506 GO:0098771 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1903795 GO:1903959 GO:2000185

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

260

Amino Acids

29.4

Weight (kDa)

5.17

Isoelectric Point (pI)

48.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33770
fragaria_vesca	FvH4_3g09200 FvH4_3g29950
malus_domestica	MD05G1312700.v1.1 MD10G1294500.v1.1
prunus_persica	Prupe.4G047400_v2.0.a1 Prupe.4G047400_v2.0.a1
pyrus_communis	pycom05g29070 pycom05g29080 pycom10g24620 pycom10g24630 pycom10g24640
rosa_chinensis	RchiOBHm_Chr5g0008401
rosa_laevigata	RLG00000031568
rosa_multiflora	Rmu_co8007308.1_g000001 Rmu_co8292313.1_g000001 Rmu_sc0004326.1_g000003 Rmu_sc0028200.1_g000001 Rmu_ssc0000388.1_g000061
rosa_roxburghii	Rroxscaffold_1G00068090
rosa_rugosa	Rorug04G0435600
rosa_samantha	Rh5AG064200 Rh5BG061400 Rh5CG071300 Rh5DG060200 Rh5DG060300
rosa_wichuraiana	Rw5G005660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	531
AclWI	GGATC	3 cut(s)	10, 23, 622
AcsI	RAATTY	2 cut(s)	240, 583
AfaI	GTAC	2 cut(s)	32, 67
AfiI	CCNNNNNNNGG	3 cut(s)	531, 612, 654
AgsI	TTSAA	3 cut(s)	55, 272, 610
AjnI	CCWGG	1 cut(s)	78
AjuI	GAANNNNNNNTTGG	2 cut(s)	268, 300
AloI	GAACNNNNNNTCC	2 cut(s)	587, 619
AluBI	AGCT	3 cut(s)	27, 318, 399
AluI	AGCT	3 cut(s)	27, 318, 399
Alw21I	GWGCWC	1 cut(s)	401
Alw26I	GTCTC	1 cut(s)	42
AlwI	GGATC	3 cut(s)	10, 23, 622
AoxI	GGCC	1 cut(s)	589
ApeKI	GCWGC	2 cut(s)	315, 644
ApoI	RAATTY	2 cut(s)	240, 583
AspS9I	GGNCC	1 cut(s)	769
AsuHPI	GGTGA	2 cut(s)	15, 334
AsuII	TTCGAA	1 cut(s)	238
AvaII	GGWCC	1 cut(s)	769
BaeI	ACNNNNGTAYC	2 cut(s)	272, 305
BamHI	GGATCC	1 cut(s)	15
BanII	GRGCYC	1 cut(s)	401
BbsI	GAAGAC	1 cut(s)	62
Bbv12I	GWGCWC	1 cut(s)	401
BbvI	GCAGC	2 cut(s)	327, 656
BccI	CCATC	4 cut(s)	122, 511, 747, 760
BciT130I	CCWGG	1 cut(s)	80
BclI	TGATCA	1 cut(s)	576
BcoDI	GTCTC	1 cut(s)	42
BfaI	CTAG	1 cut(s)	125
BisI	GCNGC	2 cut(s)	316, 645
BlsI	GCNGC	2 cut(s)	317, 646
Bme1390I	CCNGG	1 cut(s)	80
Bme18I	GGWCC	1 cut(s)	769
BmgT120I	GGNCC	1 cut(s)	769
BmiI	GGNNCC	1 cut(s)	17
BmrFI	CCNGG	1 cut(s)	80
BmsI	GCATC	1 cut(s)	666
BpiI	GAAGAC	1 cut(s)	62
BpmI	CTGGAG	1 cut(s)	165
Bpu14I	TTCGAA	1 cut(s)	238
BsaWI	WCCGGW	1 cut(s)	558
Bsc4I	CCNNNNNNNGG	3 cut(s)	531, 612, 654
Bse1I	ACTGG	3 cut(s)	148, 331, 525
Bse3DI	GCAATG	1 cut(s)	709
BseBI	CCWGG	1 cut(s)	80
BseGI	GGATG	1 cut(s)	681
BseLI	CCNNNNNNNGG	3 cut(s)	531, 612, 654
BseMI	GCAATG	1 cut(s)	709
BseMII	CTCAG	1 cut(s)	338
BseNI	ACTGG	3 cut(s)	148, 331, 525
BseRI	GAGGAG	1 cut(s)	242
BseXI	GCAGC	2 cut(s)	327, 656
BsgI	GTGCAG	1 cut(s)	704
BshFI	GGCC	1 cut(s)	591
BsiHKAI	GWGCWC	1 cut(s)	401
BsiSI	CCGG	1 cut(s)	559
BslI	CCNNNNNNNGG	3 cut(s)	531, 612, 654
BsmAI	GTCTC	1 cut(s)	42
BsmBI	CGTCTC	1 cut(s)	42
BsnI	GGCC	1 cut(s)	591
Bsp119I	TTCGAA	1 cut(s)	238
Bsp1286I	GDGCHC	1 cut(s)	401
Bsp143I	GATC	3 cut(s)	15, 576, 627
BspANI	GGCC	1 cut(s)	591
BspCNI	CTCAG	1 cut(s)	339
BspHI	TCATGA	1 cut(s)	579
BspLI	GGNNCC	1 cut(s)	17
BspPI	GGATC	3 cut(s)	10, 23, 622
BspT104I	TTCGAA	1 cut(s)	238
BsrDI	GCAATG	1 cut(s)	709
BsrI	ACTGG	3 cut(s)	148, 331, 525
BssMI	GATC	3 cut(s)	15, 576, 627
Bst2UI	CCWGG	1 cut(s)	80
Bst4CI	ACNGT	5 cut(s)	65, 111, 171, 599, 693
BstBI	TTCGAA	1 cut(s)	238
BstC8I	GCNNGC	3 cut(s)	212, 338, 371
BstDEI	CTNAG	2 cut(s)	347, 449
BstENI	CCTNNNNNAGG	1 cut(s)	610
BstF5I	GGATG	1 cut(s)	681
BstKTI	GATC	3 cut(s)	18, 579, 630
BstMAI	GTCTC	1 cut(s)	42
BstMBI	GATC	3 cut(s)	15, 576, 627
BstNI	CCWGG	1 cut(s)	80
BstSCI	CCNGG	1 cut(s)	78
BstV1I	GCAGC	2 cut(s)	327, 656
BstV2I	GAAGAC	1 cut(s)	62
BstX2I	RGATCY	1 cut(s)	15
BstYI	RGATCY	1 cut(s)	15
BsuRI	GGCC	1 cut(s)	591
BtsCI	GGATG	1 cut(s)	681
BtsIMutI	CAGTG	1 cut(s)	570
Cac8I	GCNNGC	3 cut(s)	212, 338, 371
CciI	TCATGA	1 cut(s)	579
Cfr13I	GGNCC	1 cut(s)	769
Csp6I	GTAC	2 cut(s)	31, 66
CviAII	CATG	3 cut(s)	293, 304, 580
CviJI	RGCY	9 cut(s)	27, 102, 210, 318, 373, 399, 524, 591, 647
CviKI_1	RGCY	9 cut(s)	27, 102, 210, 318, 373, 399, 524, 591, 647
CviQI	GTAC	2 cut(s)	31, 66
DdeI	CTNAG	2 cut(s)	347, 449
DpnI	GATC	3 cut(s)	17, 578, 629
DpnII	GATC	3 cut(s)	15, 576, 627
Ecl136II	GAGCTC	1 cut(s)	399
Eco24I	GRGCYC	1 cut(s)	401
Eco47I	GGWCC	1 cut(s)	769
Eco53kI	GAGCTC	1 cut(s)	399
EcoICRI	GAGCTC	1 cut(s)	399
EcoNI	CCTNNNNNAGG	1 cut(s)	610
EcoRII	CCWGG	1 cut(s)	78
EcoT38I	GRGCYC	1 cut(s)	401
Esp3I	CGTCTC	1 cut(s)	42
FaeI	CATG	3 cut(s)	296, 307, 583
FatI	CATG	3 cut(s)	292, 303, 579
FbaI	TGATCA	1 cut(s)	576
Fnu4HI	GCNGC	2 cut(s)	316, 645
FokI	GGATG	1 cut(s)	688
FriOI	GRGCYC	1 cut(s)	401
Fsp4HI	GCNGC	2 cut(s)	316, 645
FspBI	CTAG	1 cut(s)	125
GluI	GCNGC	2 cut(s)	316, 645
GsuI	CTGGAG	1 cut(s)	165
HaeIII	GGCC	1 cut(s)	591
HapII	CCGG	1 cut(s)	559
Hin1II	CATG	3 cut(s)	296, 307, 583
HinfI	GANTC	3 cut(s)	268, 541, 775
HpaII	CCGG	1 cut(s)	559
HphI	GGTGA	2 cut(s)	15, 334
Hpy188I	TCNGA	2 cut(s)	366, 423
Hpy188III	TCNNGA	4 cut(s)	19, 157, 580, 772
HpyAV	CCTTC	2 cut(s)	157, 178
HpyCH4III	ACNGT	5 cut(s)	65, 111, 171, 599, 693
HpyCH4V	TGCA	4 cut(s)	340, 679, 702, 721
HpyF3I	CTNAG	2 cut(s)	347, 449
Hsp92II	CATG	3 cut(s)	296, 307, 583
Ksp22I	TGATCA	1 cut(s)	576
Kzo9I	GATC	3 cut(s)	15, 576, 627
LmnI	GCTCC	2 cut(s)	255, 366
Lsp1109I	GCAGC	2 cut(s)	327, 656
LweI	GCATC	1 cut(s)	666
MaeI	CTAG	1 cut(s)	125
MaeIII	GTNAC	3 cut(s)	3, 139, 322
MalI	GATC	3 cut(s)	17, 578, 629
MboI	GATC	3 cut(s)	15, 576, 627
MboII	GAAGA	2 cut(s)	67, 452
MfeI	CAATTG	2 cut(s)	309, 341
MflI	RGATCY	1 cut(s)	15
MhlI	GDGCHC	1 cut(s)	401
MluCI	AATT	8 cut(s)	240, 277, 309, 341, 417, 458, 583, 735
MnlI	CCTC	8 cut(s)	140, 181, 225, 263, 421, 456, 735, 750
MseI	TTAA	2 cut(s)	193, 434
MspI	CCGG	1 cut(s)	559
MspR9I	CCNGG	1 cut(s)	80
MunI	CAATTG	2 cut(s)	309, 341
MvaI	CCWGG	1 cut(s)	80
NdeII	GATC	3 cut(s)	15, 576, 627
NlaIII	CATG	3 cut(s)	296, 307, 583
NlaIV	GGNNCC	1 cut(s)	17
NmuCI	GTSAC	2 cut(s)	3, 322
NspV	TTCGAA	1 cut(s)	238
PagI	TCATGA	1 cut(s)	579
PfeI	GAWTC	3 cut(s)	268, 541, 775
PflMI	CCANNNNNTGG	1 cut(s)	531
PfoI	TCCNGGA	1 cut(s)	78
PkrI	GCNGC	2 cut(s)	317, 646
Psp124BI	GAGCTC	1 cut(s)	401
Psp6I	CCWGG	1 cut(s)	78
PspGI	CCWGG	1 cut(s)	78
PspN4I	GGNNCC	1 cut(s)	17
PspPI	GGNCC	1 cut(s)	769
PsuI	RGATCY	1 cut(s)	15
RsaI	GTAC	2 cut(s)	32, 67
RsaNI	GTAC	2 cut(s)	31, 66
SacI	GAGCTC	1 cut(s)	401
SaqAI	TTAA	2 cut(s)	193, 434
SatI	GCNGC	2 cut(s)	316, 645
Sau3AI	GATC	3 cut(s)	15, 576, 627
Sau96I	GGNCC	1 cut(s)	769
ScrFI	CCNGG	1 cut(s)	80
SduI	GDGCHC	1 cut(s)	401
SetI	ASST	9 cut(s)	29, 98, 192, 231, 320, 360, 401, 655, 701
SfaNI	GCATC	1 cut(s)	666
SfuI	TTCGAA	1 cut(s)	238
SinI	GGWCC	1 cut(s)	769
Sse9I	AATT	8 cut(s)	240, 277, 309, 341, 417, 458, 583, 735
SspMI	CTAG	1 cut(s)	125
SstI	GAGCTC	1 cut(s)	401
StyD4I	CCNGG	1 cut(s)	78
TaaI	ACNGT	5 cut(s)	65, 111, 171, 599, 693
TaqI	TCGA	1 cut(s)	238
TasI	AATT	8 cut(s)	240, 277, 309, 341, 417, 458, 583, 735
TfiI	GAWTC	3 cut(s)	268, 541, 775
Tru1I	TTAA	2 cut(s)	193, 434
Tru9I	TTAA	2 cut(s)	193, 434
TscAI	CASTG	1 cut(s)	570
TseFI	GTSAC	2 cut(s)	3, 322
TseI	GCWGC	2 cut(s)	315, 644
Tsp45I	GTSAC	2 cut(s)	3, 322
TspDTI	ATGAA	3 cut(s)	176, 367, 596
TspRI	CASTG	1 cut(s)	570
Van91I	CCANNNNNTGG	1 cut(s)	531
VpaK11BI	GGWCC	1 cut(s)	769
XagI	CCTNNNNNAGG	1 cut(s)	610
XapI	RAATTY	2 cut(s)	240, 583
XspI	CTAG	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.