Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0006171

Physical Location & Seq

Genomic Coordinates Reverse (-)

5382200 .. 5388797

Gene Structure 6598 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG064200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2784 bp

ATGGATATGGTTCTTAGTGACTCTGATTGGGACAGTTACAGTGAGACTGGTAGCAATGAGGATCAAGAGGGAAACGAATATTTCTATGGTGGGCATGCCAGCAGCCTATTGTCTAGCCTCGAGGCTAGCATTGGGAAAATTGATGACTTTCTCTCATTCGAGAGGGGATTTATATATGGGGACATAGTAAGCTCCGTAAGAGATCCATCTGGACAGATGGGAAAAGTTGTTGGCATTAAGATGTCTGTTGATTTGGAGAGTGTGAATGGAAATATGATCAAAAATGTAAACTCAAAGAATCTGTCAAAGATCCGTCCCATTTCGGTGGGGGATTATGTTGTTTGTGGGCCTTGGCTTGGAAGGGTGGATAGAGTAGTTGACTGTGTAGCTGTTGTCTTTGACGATGGCACAGAGTGTGTGGTGACTGCTGTGGATCCAGAGAAGCTCGTACCCGTCTCCCCAAACATACTTGAAGACCCACAGTACCCATATTATCCAGGACAGAGAGTAAAGGTTAGGCTCTCAACTGTTTCCAAATCAACTAGATGGTTTTGTGGTAACTGGAGGGAAAATCAAGATGAAGGAACTGTTTGTTCTTTGGAAGGAGGTTTAATGTATGTTGATTGGCTTGCCTCTGTTCTCGTAGGTTGTGGTTCGAATTTTCCTGCTCCTCCACATCTGCTGGATTCAAAGAAATTGACTTTGGTATCATGTTTCTCTCATGCCAATTGGCAGCTTGGTGACTGGTGTATGCTTGCAATTGCTGAGTGTAAAGGTTTTTCGGAGCAGGCTTTTCATAGAACTTCTACTTGTGAGCTCACTAACAAGCAAAACAATTCAGAAAGAGGATTTAAGAGAAGAAATCCTAAGTCAAAAATTGAGGAAATCTTTGTAATCTCAAAGACAAAGACCAAAGTTGATGTTCTGTGGCAAGATGGTAGCCAGTCTTTGGAAGTGGATTCACAGACATTAGTTCCGGTCAGTGTTGTAAATGATCATGAATTTTGGCCTGAACAGTTTGTCCTTGAAAAGGGAACTTATGATGATCCAAACTTGTTTAGCAGCCAAAGGTGGGGTGTTGTGCGTGGTGTGGATGCAAAGGAACGAACAGTAAAGGTGCAATGGAAAACTATAACTGCACCCGAAACAAATAATTTAGAGGGAGAGCAGATGGAGGAAGTTGTAAGTGCTTATGAACTTGTTGAGCACCCGGATTACTCCTACTGTTTTGGAGATTATGTGTTCAGGATGGTCCAGAATCAGTTTGATGAACAAGCTGATAAAAACTATCCGAACACAAGGTCTGACACGACTGAGGAGGTAGCTCCGGAAGAGAAGAACTTCAGTGGGGATCAAGATGACTTCACAGATAAAAGTTACCTACCTTGCATTGGCAATGTTTTGGGCTTCATAGATGGTGCTTTAGAAGTGAGATGGGCAACTGGTATTACAAGCAAGGTGGCCCCATGTGAAATTTTCCGGTTTGATAAACATGAAGGTTCAGCTGCAATCCCCGTAGAAGATGACACTGAGGAATTGAACAAAGAGATAATTCAACATGAAAAACAACCTAATAACGAAAAAGGAAAGGATTCCTTGAATTTAGATGATGCTGCTAAAAGTTGTAAACCGTACACAAGCGAGTCTAGTTCCTATTTCCTTCCTCAAGCTGCCATTGGATTTTTCTCGAGCATCGCTGTGAGTCTCTTTGGATCCCATAGTTACACATCACTTTCAGGTCCTTCCCCATCAGTCTGTACTTCTGCAGTTGGAAAGGAATCCGGGATCTCCCATGAGAAAGGAATAGTAGAAACTCGTGGTGTCTGCGCTGAGCCACATTCAACGTCTGAGTCTGACATTATTGGCAATGAAAATTTGAATCATGAAGGCAAAGACATTGAGGGGAACAGATATATTCCATGTTTGAAAGACAAAGAGAGTGCAGATCAGTTCAGGCAATTTGACATGCTTGCTGATTGTGCAGATCACCATTTTCATAGTGCCAGGAAGGAGTTGGCATTATCTCAGGTAAAAAGAGGTTGGATGAAGAAGGTTCAGCAAGAGTGGAGCATCTTAGAGAAAGATCTTCCTGAACAAATCTATGTCCGTGCGTTTGAGGAAAGGATGGATCTACTGCGGGCAGCCATTGTTGGTACACCAGGAACTCCATATCATGATGGGCTTTTCTTCTTTGACATTTATCTTCCACCAGAGTATCCTCATGATCCACCTATGGTACACTACACTTCTGGTGGGCTACGTGTGAACCCGAACTTGTATGAGTCTGGAAAGGTCTGTCTCAGTCTGCTTAACACGTGGACTGGTACGGGCAGTGAAGTTTGGAATCCTGGGAGCTCCACCATTCTTCAAGTTCTTCTCTCCCTTCAGGCCCTTGTGCTTAATGACAGGCCATATTTCAATGAAGCTGGATATGATCAGCAGGTGGGAAGAACTGAGGGAGAGAAAAACTCAGTGAGCTATAACGAAAATGCATTCCTTATGACTTGCAAGTCCATGCTGTTTTCTCTCCAAAAGCCGCCTAAGCATTTTGAGGGGCTTGTGATGGAACACTTCACTCAGCGCTCTGAAAATATTCTGATGTCTTGTAAGGCATATATGGAGGGGGTTCCAATAGGGTGTGCTGTTGATTTTCAGAAAACCGATGATAAAGAGGGAAGCTCTACTGGGTTCAAAATTATGCTTGCTAAGCTGTTTCAGAAACTAGTGGAGGCATTTTCTGCTAAGGGAATCGACTGCAGCCAGTTCATCGCGCCAGGGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006464 GO:0006807 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0010966 GO:0012505 GO:0015698 GO:0016036 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0030163 GO:0031625 GO:0031667 GO:0031668 GO:0031669 GO:0032446 GO:0032879 GO:0033554 GO:0034762 GO:0034765 GO:0036211 GO:0042592 GO:0042594 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043412 GO:0044070 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0048878 GO:0050789 GO:0050801 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051716 GO:0055062 GO:0055081 GO:0055083 GO:0061630 GO:0061659 GO:0065007 GO:0065008 GO:0070647 GO:0071496 GO:0071704 GO:0072505 GO:0072506 GO:0098771 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1903795 GO:1903959 GO:2000185

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

927

Amino Acids

103.53

Weight (kDa)

4.87

Isoelectric Point (pI)

36.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tSH3-B_UBE2O	PF23046	109 - 241	3.9e-40	UBE2O, tandem tSH3-B domain
SH3-B_UBE2O	PF23043	332 - 405	3.4e-18	UBE2O, SH3-B domain
UQ_con	PF00179	685 - 830	2.5e-23	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33770
fragaria_vesca	FvH4_3g09200 FvH4_3g29950
malus_domestica	MD05G1312700.v1.1 MD10G1294500.v1.1
prunus_persica	Prupe.4G047400_v2.0.a1 Prupe.4G047400_v2.0.a1
pyrus_communis	pycom05g29070 pycom05g29080 pycom10g24620 pycom10g24630 pycom10g24640
rosa_chinensis	RchiOBHm_Chr5g0008401
rosa_laevigata	RLG00000031568
rosa_multiflora	Rmu_co8007308.1_g000001 Rmu_co8292313.1_g000001 Rmu_sc0004326.1_g000003 Rmu_sc0028200.1_g000001 Rmu_ssc0000388.1_g000061
rosa_roxburghii	Rroxscaffold_1G00068090
rosa_rugosa	Rorug04G0435600
rosa_samantha	Rh5AG064200 Rh5BG061400 Rh5CG071300 Rh5DG060200 Rh5DG060300
rosa_wichuraiana	Rw5G005660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2431
AasI	GACNNNNNNGTC	1 cut(s)	2509
AbsI	CCTCGAGG	1 cut(s)	119
Acc36I	ACCTGC	1 cut(s)	2431
AccB7I	CCANNNNNTGG	1 cut(s)	949
AccII	CGCG	1 cut(s)	2771
AccIII	TCCGGA	1 cut(s)	1327
AciI	CCGC	2 cut(s)	2137, 2537
AcsI	RAATTY	5 cut(s)	658, 1001, 1473, 1600, 1873
AcuI	CTGAAG	2 cut(s)	1327, 2369
AcvI	CACGTG	1 cut(s)	2316
AdeI	CACNNNGTG	1 cut(s)	414
AfaI	GTAC	7 cut(s)	450, 485, 1634, 1759, 2155, 2238, 2326
AfeI	AGCGCT	1 cut(s)	2582
AfiI	CCNNNNNNNGG	5 cut(s)	356, 949, 1030, 1072, 1391
AflIII	ACRYGT	2 cut(s)	2260, 2313
AhlI	ACTAGT	1 cut(s)	2722
AjnI	CCWGG	5 cut(s)	496, 2003, 2158, 2347, 2773
AjuI	GAANNNNNNNTTGG	2 cut(s)	686, 718
AloI	GAACNNNNNNTCC	2 cut(s)	1005, 1037
Alw21I	GWGCWC	3 cut(s)	819, 1209, 2357
Alw26I	GTCTC	4 cut(s)	38, 460, 1709, 2303
Ama87I	CYCGRG	2 cut(s)	119, 1687
Aor13HI	TCCGGA	1 cut(s)	1327
Aor51HI	AGCGCT	1 cut(s)	2582
AoxI	GGCC	5 cut(s)	347, 1007, 1461, 2388, 2408
ApeKI	GCWGC	8 cut(s)	102, 733, 1062, 1505, 1613, 1670, 2141, 2757
ApoI	RAATTY	5 cut(s)	658, 1001, 1473, 1600, 1873
ArsI	GACNNNNNNTTYG	4 cut(s)	287, 319, 1286, 1318
Asp700I	GAANNNNTTC	3 cut(s)	1340, 1591, 2592
AspLEI	GCGC	3 cut(s)	1829, 2583, 2773
AspS9I	GGNCC	5 cut(s)	347, 1252, 1462, 1739, 2389
AsuC2I	CCSGG	2 cut(s)	1211, 1783
AsuHPI	GGTGA	3 cut(s)	433, 752, 1979
AsuII	TTCGAA	1 cut(s)	656
AsuNHI	GCTAGC	1 cut(s)	125
AvaI	CYCGRG	2 cut(s)	119, 1687
AvaII	GGWCC	2 cut(s)	1252, 1739
BaeI	ACNNNNGTAYC	4 cut(s)	690, 723, 2198, 2231
BamHI	GGATCC	2 cut(s)	433, 1712
BanII	GRGCYC	2 cut(s)	819, 2357
BauI	CACGAG	1 cut(s)	1815
BbrPI	CACGTG	1 cut(s)	2316
BbsI	GAAGAC	1 cut(s)	480
Bbv12I	GWGCWC	3 cut(s)	819, 1209, 2357
BbvI	GCAGC	8 cut(s)	114, 745, 1074, 1492, 1600, 1657, 2153, 2769
BciT130I	CCWGG	5 cut(s)	498, 2005, 2160, 2349, 2775
BciVI	GTATCC	1 cut(s)	2226
BclI	TGATCA	3 cut(s)	276, 994, 2434
BcnI	CCSGG	2 cut(s)	1211, 1783
BcoDI	GTCTC	4 cut(s)	38, 460, 1709, 2303
BcuI	ACTAGT	1 cut(s)	2722
BfaI	CTAG	5 cut(s)	114, 126, 543, 1647, 2723
BfmI	CTRYAG	2 cut(s)	1764, 2755
BfoI	RGCGCY	1 cut(s)	2584
BfuAI	ACCTGC	1 cut(s)	2431
BfuI	GTATCC	1 cut(s)	2226
BglII	AGATCT	1 cut(s)	2083
BisI	GCNGC	9 cut(s)	103, 734, 1063, 1506, 1614, 1671, 2142, 2537, 2758
BlpI	GCTNAGC	2 cut(s)	1830, 2706
BlsI	GCNGC	9 cut(s)	104, 735, 1064, 1507, 1615, 1672, 2143, 2538, 2759
Bme1390I	CCNGG	7 cut(s)	498, 1211, 1783, 2005, 2160, 2349, 2775
Bme18I	GGWCC	2 cut(s)	1252, 1739
BmeT110I	CYCGRG	2 cut(s)	119, 1687
BmgT120I	GGNCC	5 cut(s)	347, 1252, 1462, 1739, 2389
BmiI	GGNNCC	4 cut(s)	435, 1464, 1714, 2628
BmrFI	CCNGG	7 cut(s)	498, 1211, 1783, 2005, 2160, 2349, 2775
BmrI	ACTGGG	1 cut(s)	2694
BmsI	GCATC	4 cut(s)	1084, 1600, 1701, 2079
BmtI	GCTAGC	1 cut(s)	129
BmuI	ACTGGG	1 cut(s)	2694
BpiI	GAAGAC	1 cut(s)	480
BplI	GAGNNNNNCTC	4 cut(s)	2453, 2485, 2663, 2695
BpmI	CTGGAG	1 cut(s)	583
Bpu10I	CCTNAGC	2 cut(s)	2541, 2742
Bpu1102I	GCTNAGC	2 cut(s)	1830, 2706
Bpu14I	TTCGAA	1 cut(s)	656
BpuEI	CTTGAG	1 cut(s)	1650
BpuMI	CCSGG	2 cut(s)	1211, 1783
BsaAI	YACGTR	2 cut(s)	2261, 2316
BsaJI	CCNNGG	3 cut(s)	350, 2348, 2774
BsaWI	WCCGGW	3 cut(s)	976, 1327, 1479
BsaXI	ACNNNNNCTCC	2 cut(s)	1224, 1254
Bsc4I	CCNNNNNNNGG	5 cut(s)	356, 949, 1030, 1072, 1391
Bse1I	ACTGG	8 cut(s)	52, 566, 749, 943, 1447, 2326, 2689, 2761
Bse3DI	GCAATG	4 cut(s)	61, 1127, 1402, 1873
BseAI	TCCGGA	1 cut(s)	1327
BseBI	CCWGG	5 cut(s)	498, 2005, 2160, 2349, 2775
BseDI	CCNNGG	3 cut(s)	350, 2348, 2774
BseGI	GGATG	4 cut(s)	1099, 1254, 2049, 2130
BseLI	CCNNNNNNNGG	5 cut(s)	356, 949, 1030, 1072, 1391
BseMI	GCAATG	4 cut(s)	61, 1127, 1402, 1873
BseNI	ACTGG	8 cut(s)	52, 566, 749, 943, 1447, 2326, 2689, 2761
BseRI	GAGGAG	2 cut(s)	660, 1331
BseXI	GCAGC	8 cut(s)	114, 745, 1074, 1492, 1600, 1657, 2153, 2769
BsgI	GTGCAG	3 cut(s)	1122, 1962, 2001
Bsh1236I	CGCG	1 cut(s)	2771
BshFI	GGCC	5 cut(s)	349, 1009, 1463, 2390, 2410
BsiHKAI	GWGCWC	3 cut(s)	819, 1209, 2357
BsiHKCI	CYCGRG	2 cut(s)	119, 1687
BsiSI	CCGG	5 cut(s)	977, 1211, 1328, 1480, 1782
BslFI	GGGAC	3 cut(s)	44, 194, 300
BslI	CCNNNNNNNGG	5 cut(s)	356, 949, 1030, 1072, 1391
BsmAI	GTCTC	4 cut(s)	38, 460, 1709, 2303
BsmBI	CGTCTC	1 cut(s)	460
BsmFI	GGGAC	3 cut(s)	44, 194, 300
BsmI	GAATGC	1 cut(s)	2492
BsnI	GGCC	5 cut(s)	349, 1009, 1463, 2390, 2410
BsoBI	CYCGRG	2 cut(s)	119, 1687
Bsp119I	TTCGAA	1 cut(s)	656
Bsp1286I	GDGCHC	3 cut(s)	819, 1209, 2357
Bsp13I	TCCGGA	1 cut(s)	1327
Bsp1720I	GCTNAGC	2 cut(s)	1830, 2706
BspACI	CCGC	2 cut(s)	2137, 2537
BspANI	GGCC	5 cut(s)	349, 1009, 1463, 2390, 2410
BspEI	TCCGGA	1 cut(s)	1327
BspFNI	CGCG	1 cut(s)	2771
BspHI	TCATGA	4 cut(s)	997, 1882, 2173, 2221
BspLI	GGNNCC	4 cut(s)	435, 1464, 1714, 2628
BspMAI	CTGCAG	2 cut(s)	1768, 2759
BspMI	ACCTGC	1 cut(s)	2431
BspOI	GCTAGC	1 cut(s)	129
BspT104I	TTCGAA	1 cut(s)	656
BsrDI	GCAATG	4 cut(s)	61, 1127, 1402, 1873
BsrI	ACTGG	8 cut(s)	52, 566, 749, 943, 1447, 2326, 2689, 2761
BssECI	CCNNGG	3 cut(s)	350, 2348, 2774
BssSI	CACGAG	1 cut(s)	1815
BssT1I	CCWWGG	1 cut(s)	350
Bst2BI	CACGAG	1 cut(s)	1815
Bst2UI	CCWGG	5 cut(s)	498, 2005, 2160, 2349, 2775
Bst6I	CTCTTC	1 cut(s)	1326
BstAPI	GCANNNNNTGC	1 cut(s)	2738
BstBAI	YACGTR	2 cut(s)	2261, 2316
BstBI	TTCGAA	1 cut(s)	656
BstC8I	GCNNGC	9 cut(s)	96, 100, 127, 630, 756, 789, 1971, 2139, 2703
BstENI	CCTNNNNNAGG	1 cut(s)	1028
BstF5I	GGATG	4 cut(s)	1099, 1254, 2049, 2130
BstFNI	CGCG	1 cut(s)	2771
BstH2I	RGCGCY	1 cut(s)	2584
BstHHI	GCGC	3 cut(s)	1829, 2583, 2773
BstMAI	GTCTC	4 cut(s)	38, 460, 1709, 2303
BstMWI	GCNNNNNNNGC	4 cut(s)	1979, 2542, 2707, 2738
BstNI	CCWGG	5 cut(s)	498, 2005, 2160, 2349, 2775
BstNSI	RCATGY	2 cut(s)	98, 1969
BstSCI	CCNGG	7 cut(s)	496, 1209, 1781, 2003, 2158, 2347, 2773
BstSFI	CTRYAG	2 cut(s)	1764, 2755
BstUI	CGCG	1 cut(s)	2771
BstV1I	GCAGC	8 cut(s)	114, 745, 1074, 1492, 1600, 1657, 2153, 2769
BstV2I	GAAGAC	1 cut(s)	480
BstX2I	RGATCY	7 cut(s)	202, 309, 433, 1712, 1785, 2083, 2128
BstXI	CCANNNNNNTGG	1 cut(s)	325
BstYI	RGATCY	7 cut(s)	202, 309, 433, 1712, 1785, 2083, 2128
BsuI	GTATCC	1 cut(s)	2226
BsuRI	GGCC	5 cut(s)	349, 1009, 1463, 2390, 2410
BtgZI	GCGATG	2 cut(s)	1678, 2752
BtsCI	GGATG	4 cut(s)	1099, 1254, 2049, 2130
BtsI	GCAGTG	1 cut(s)	2338
BtsIMutI	CAGTG	6 cut(s)	46, 988, 1351, 1527, 2338, 2478
BveI	ACCTGC	1 cut(s)	2431
Cac8I	GCNNGC	9 cut(s)	96, 100, 127, 630, 756, 789, 1971, 2139, 2703
CciI	TCATGA	4 cut(s)	997, 1882, 2173, 2221
CfoI	GCGC	3 cut(s)	1829, 2583, 2773
Cfr13I	GGNCC	5 cut(s)	347, 1252, 1462, 1739, 2389
Csp6I	GTAC	7 cut(s)	449, 484, 1633, 1758, 2154, 2237, 2325
CspCI	CAANNNNNGTGG	2 cut(s)	1440, 1475
CviQI	GTAC	7 cut(s)	449, 484, 1633, 1758, 2154, 2237, 2325
DraIII	CACNNNGTG	1 cut(s)	414
DrdI	GACNNNNNNGTC	1 cut(s)	2509
DseDI	GACNNNNNNGTC	1 cut(s)	2509
Eam1104I	CTCTTC	1 cut(s)	1326
EarI	CTCTTC	1 cut(s)	1326
Ecl136II	GAGCTC	2 cut(s)	817, 2355
Eco130I	CCWWGG	1 cut(s)	350
Eco24I	GRGCYC	2 cut(s)	819, 2357
Eco47I	GGWCC	2 cut(s)	1252, 1739
Eco47III	AGCGCT	1 cut(s)	2582
Eco53kI	GAGCTC	2 cut(s)	817, 2355
Eco57I	CTGAAG	2 cut(s)	1327, 2369
Eco72I	CACGTG	1 cut(s)	2316
Eco88I	CYCGRG	2 cut(s)	119, 1687
EcoICRI	GAGCTC	2 cut(s)	817, 2355
EcoNI	CCTNNNNNAGG	1 cut(s)	1028
EcoO109I	RGGNCCY	2 cut(s)	1739, 2389
EcoRII	CCWGG	5 cut(s)	496, 2003, 2158, 2347, 2773
EcoT14I	CCWWGG	1 cut(s)	350
EcoT22I	ATGCAT	1 cut(s)	2494
EcoT38I	GRGCYC	2 cut(s)	819, 2357
ErhI	CCWWGG	1 cut(s)	350
Esp3I	CGTCTC	1 cut(s)	460
FalI	AAGNNNNNCTT	2 cut(s)	1580, 1612
FaqI	GGGAC	3 cut(s)	44, 194, 300
FauI	CCCGC	1 cut(s)	2130
FbaI	TGATCA	3 cut(s)	276, 994, 2434
Fnu4HI	GCNGC	9 cut(s)	103, 734, 1063, 1506, 1614, 1671, 2142, 2537, 2758
FokI	GGATG	4 cut(s)	1106, 1261, 2056, 2137
FriOI	GRGCYC	2 cut(s)	819, 2357
Fsp4HI	GCNGC	9 cut(s)	103, 734, 1063, 1506, 1614, 1671, 2142, 2537, 2758
FspBI	CTAG	5 cut(s)	114, 126, 543, 1647, 2723
GlaI	GCGC	3 cut(s)	1828, 2582, 2772
GluI	GCNGC	9 cut(s)	103, 734, 1063, 1506, 1614, 1671, 2142, 2537, 2758
GsuI	CTGGAG	1 cut(s)	583
HaeII	RGCGCY	1 cut(s)	2584
HaeIII	GGCC	5 cut(s)	349, 1009, 1463, 2390, 2410
HapII	CCGG	5 cut(s)	977, 1211, 1328, 1480, 1782
HhaI	GCGC	3 cut(s)	1829, 2583, 2773
Hin6I	GCGC	3 cut(s)	1827, 2581, 2771
HinP1I	GCGC	3 cut(s)	1827, 2581, 2771
HincII	GTYRAC	1 cut(s)	379
HindII	GTYRAC	1 cut(s)	379
HpaII	CCGG	5 cut(s)	977, 1211, 1328, 1480, 1782
HphI	GGTGA	3 cut(s)	433, 752, 1979
Hpy166II	GTNNAC	8 cut(s)	289, 379, 1628, 1635, 2156, 2239, 2266, 2319
Hpy8I	GTNNAC	8 cut(s)	289, 379, 1628, 1635, 2156, 2239, 2266, 2319
HpyCH4IV	ACGT	3 cut(s)	1844, 2260, 2315
HpyF10VI	GCNNNNNNNGC	4 cut(s)	1979, 2542, 2707, 2738
HpySE526I	ACGT	3 cut(s)	1844, 2260, 2315
HspAI	GCGC	3 cut(s)	1827, 2581, 2771
Kpn2I	TCCGGA	1 cut(s)	1327
Ksp22I	TGATCA	3 cut(s)	276, 994, 2434
LmnI	GCTCC	7 cut(s)	197, 673, 784, 1330, 2067, 2352, 2360
Lsp1109I	GCAGC	8 cut(s)	114, 745, 1074, 1492, 1600, 1657, 2153, 2769
LweI	GCATC	4 cut(s)	1084, 1600, 1701, 2079
MaeI	CTAG	5 cut(s)	114, 126, 543, 1647, 2723
MaeII	ACGT	3 cut(s)	1844, 2260, 2315
MaeIII	GTNAC	7 cut(s)	17, 35, 421, 557, 740, 1376, 1721
MfeI	CAATTG	2 cut(s)	727, 759
MflI	RGATCY	7 cut(s)	202, 309, 433, 1712, 1785, 2083, 2128
MhlI	GDGCHC	3 cut(s)	819, 1209, 2357
MlyI	GAGTC	5 cut(s)	14, 1652, 1711, 1859, 2291
MmeI	TCCRAC	2 cut(s)	1750, 2021
Mph1103I	ATGCAT	1 cut(s)	2494
MroI	TCCGGA	1 cut(s)	1327
MroXI	GAANNNNTTC	3 cut(s)	1340, 1591, 2592
MseI	TTAA	5 cut(s)	237, 611, 852, 2310, 2400
MslI	CAYNNNNRTG	3 cut(s)	239, 323, 1697
MspA1I	CMGCKG	1 cut(s)	1505
MspI	CCGG	5 cut(s)	977, 1211, 1328, 1480, 1782
MspR9I	CCNGG	7 cut(s)	498, 1211, 1783, 2005, 2160, 2349, 2775
MunI	CAATTG	2 cut(s)	727, 759
Mva1269I	GAATGC	1 cut(s)	2492
MvaI	CCWGG	5 cut(s)	498, 2005, 2160, 2349, 2775
MvnI	CGCG	1 cut(s)	2771
MwoI	GCNNNNNNNGC	4 cut(s)	1979, 2542, 2707, 2738
NciI	CCSGG	2 cut(s)	1211, 1783
NheI	GCTAGC	1 cut(s)	125
NlaIV	GGNNCC	4 cut(s)	435, 1464, 1714, 2628
NmuCI	GTSAC	3 cut(s)	17, 421, 740
NsiI	ATGCAT	1 cut(s)	2494
NspI	RCATGY	2 cut(s)	98, 1969
NspV	TTCGAA	1 cut(s)	656
PaeI	GCATGC	1 cut(s)	98
PaeR7I	CTCGAG	2 cut(s)	119, 1687
PagI	TCATGA	4 cut(s)	997, 1882, 2173, 2221
PaqCI	CACCTGC	1 cut(s)	2431
PctI	GAATGC	1 cut(s)	2492
PdmI	GAANNNNTTC	3 cut(s)	1340, 1591, 2592
PfeI	GAWTC	9 cut(s)	298, 686, 959, 1258, 1592, 1778, 1879, 2344, 2748
PflMI	CCANNNNNTGG	1 cut(s)	949
PfoI	TCCNGGA	2 cut(s)	496, 1781
PkrI	GCNGC	9 cut(s)	104, 735, 1064, 1507, 1615, 1672, 2143, 2538, 2759
PleI	GAGTC	5 cut(s)	14, 1651, 1710, 1858, 2290
PmaCI	CACGTG	1 cut(s)	2316
PmlI	CACGTG	1 cut(s)	2316
PpsI	GAGTC	5 cut(s)	14, 1651, 1710, 1858, 2290
Ppu21I	YACGTR	2 cut(s)	2261, 2316
PpuMI	RGGWCCY	1 cut(s)	1739
Psp124BI	GAGCTC	2 cut(s)	819, 2357
Psp5II	RGGWCCY	1 cut(s)	1739
Psp6I	CCWGG	5 cut(s)	496, 2003, 2158, 2347, 2773
PspCI	CACGTG	1 cut(s)	2316
PspGI	CCWGG	5 cut(s)	496, 2003, 2158, 2347, 2773
PspN4I	GGNNCC	4 cut(s)	435, 1464, 1714, 2628
PspPI	GGNCC	5 cut(s)	347, 1252, 1462, 1739, 2389
PspPPI	RGGWCCY	1 cut(s)	1739
PspXI	VCTCGAGB	1 cut(s)	119
PstI	CTGCAG	2 cut(s)	1768, 2759
PsuI	RGATCY	7 cut(s)	202, 309, 433, 1712, 1785, 2083, 2128
PvuII	CAGCTG	1 cut(s)	1505
RsaI	GTAC	7 cut(s)	450, 485, 1634, 1759, 2155, 2238, 2326
RsaNI	GTAC	7 cut(s)	449, 484, 1633, 1758, 2154, 2237, 2325
RseI	CAYNNNNRTG	3 cut(s)	239, 323, 1697
SacI	GAGCTC	2 cut(s)	819, 2357
SaqAI	TTAA	5 cut(s)	237, 611, 852, 2310, 2400
SatI	GCNGC	9 cut(s)	103, 734, 1063, 1506, 1614, 1671, 2142, 2537, 2758
Sau96I	GGNCC	5 cut(s)	347, 1252, 1462, 1739, 2389
SchI	GAGTC	5 cut(s)	14, 1652, 1711, 1859, 2291
ScrFI	CCNGG	7 cut(s)	498, 1211, 1783, 2005, 2160, 2349, 2775
SduI	GDGCHC	3 cut(s)	819, 1209, 2357
SfaNI	GCATC	4 cut(s)	1084, 1600, 1701, 2079
SfcI	CTRYAG	2 cut(s)	1764, 2755
Sfr274I	CTCGAG	2 cut(s)	119, 1687
SfuI	TTCGAA	1 cut(s)	656
SinI	GGWCC	2 cut(s)	1252, 1739
SlaI	CTCGAG	2 cut(s)	119, 1687
SmiMI	CAYNNNNRTG	3 cut(s)	239, 323, 1697
SmlI	CTYRAG	3 cut(s)	119, 1665, 1687
SmoI	CTYRAG	3 cut(s)	119, 1665, 1687
SpeI	ACTAGT	1 cut(s)	2722
SphI	GCATGC	1 cut(s)	98
SsiI	CCGC	2 cut(s)	2137, 2537
SspI	AATATT	2 cut(s)	80, 2593
SspMI	CTAG	5 cut(s)	114, 126, 543, 1647, 2723
SstI	GAGCTC	2 cut(s)	819, 2357
StyD4I	CCNGG	7 cut(s)	496, 1209, 1781, 2003, 2158, 2347, 2773
StyI	CCWWGG	1 cut(s)	350
TaiI	ACGT	3 cut(s)	1847, 2263, 2318
TaqI	TCGA	5 cut(s)	120, 159, 656, 1688, 2751
TatI	WGTACW	1 cut(s)	1757
TauI	GCSGC	1 cut(s)	2539
TfiI	GAWTC	9 cut(s)	298, 686, 959, 1258, 1592, 1778, 1879, 2344, 2748
Tru1I	TTAA	5 cut(s)	237, 611, 852, 2310, 2400
Tru9I	TTAA	5 cut(s)	237, 611, 852, 2310, 2400
TscAI	CASTG	6 cut(s)	46, 988, 1351, 1534, 2338, 2478
TseFI	GTSAC	3 cut(s)	17, 421, 740
TseI	GCWGC	8 cut(s)	102, 733, 1062, 1505, 1613, 1670, 2141, 2757
Tsp45I	GTSAC	3 cut(s)	17, 421, 740
TspGWI	ACGGA	3 cut(s)	184, 302, 2096
TspRI	CASTG	6 cut(s)	46, 988, 1351, 1534, 2338, 2478
Van91I	CCANNNNNTGG	1 cut(s)	949
VpaK11BI	GGWCC	2 cut(s)	1252, 1739
XagI	CCTNNNNNAGG	1 cut(s)	1028
XapI	RAATTY	5 cut(s)	658, 1001, 1473, 1600, 1873
XceI	RCATGY	2 cut(s)	98, 1969
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2011
XhoI	CTCGAG	2 cut(s)	119, 1687
XmnI	GAANNNNTTC	3 cut(s)	1340, 1591, 2592
XspI	CTAG	5 cut(s)	114, 126, 543, 1647, 2723
Zsp2I	ATGCAT	1 cut(s)	2494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.