Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0006171

Physical Location & Seq

Genomic Coordinates Forward (+)

26445052 .. 26445996

Gene Structure 945 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g24620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGATCAATATGAAAATGAATCTTTCTATGGCGGGCATGCGAGCAGCATCTTGTCCAGCCTGGAGGCTTCCATTGGGAAAATTGATGATTTTCTCTCGTTTGAGAGGGGATTCATATATGGAGACATGGTATGCTCCGTAAGAGATCCATCTGGGCAGATGGGCAGAGTAGTTGGGATTAATATGTTCGTTGATTTGGAGAGTGTTAAGGGACACATAATAAAAGATGTCAACTCCAATAACCTATCAAAGATCCGCTCCATTTCGGTGGGGGATTATGTTGTTTGTGGTCCATGGCTTGGAAGGGTGCATAGAGTGGTTGACCACGTTATGGTTGTATTTGATGATGGAACAGAGTATGAGGTCACTGCTGTGGATCAAGAGAAGCTCTTGCCCATTTCTCCTAACCTACTTGAAGATCCACAGTACCCATATTATCCAGGACAGAAAGTGCAGGTCAGACTCTCAACCGCTGCCAAATCAACTAGATGGTTATGCAGTAACTGGAGGGAAAATCAAGTCGAGGGAACTGTTTGTTCTGTGGAAGGAGGTTTGGTGTATGTTGATTGGCTTGCCTCTGTTCTCATGGGTTGTGATTCGAAATTGCCTGCTCCTCCACGTGTGCTGGATCCGAAAAAGTTGAATGTGTTGTCATGTTTCTCTCATGTAAACTGGCAGCTTGGTGACTGGTGTATGCTTCAAGTTGCTGACGATAAGGCTGTCATGGAGCAGGATTTTCATAATGCATCTACTTGTGAGATGAATAACAAGCCCAAGATATCAGGAAGAGGATTCAGGAGAAGAAACGCAGATTCAAAATTCGATGAAATCTTTGTCATCATAAAGACAAGGACCAAGGTTGATGTGGCGTGGCAAGATGGTAGCCACTCTTTGGGATTAGATTCACAGACACTAGTTCCAGTCAGCGTTGTAAATGATCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006464 GO:0006807 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0010966 GO:0012505 GO:0015698 GO:0016036 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0030163 GO:0031625 GO:0031667 GO:0031668 GO:0031669 GO:0032446 GO:0032879 GO:0033554 GO:0034762 GO:0034765 GO:0036211 GO:0042592 GO:0042594 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043412 GO:0044070 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0048878 GO:0050789 GO:0050801 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051716 GO:0055062 GO:0055081 GO:0055083 GO:0061630 GO:0061659 GO:0065007 GO:0065008 GO:0070647 GO:0071496 GO:0071704 GO:0072505 GO:0072506 GO:0098771 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1903795 GO:1903959 GO:2000185

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

315

Amino Acids

35.12

Weight (kDa)

5.3

Isoelectric Point (pI)

32.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tSH3-B_UBE2O	PF23046	90 - 222	7.5e-41	UBE2O, tandem tSH3-B domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33770
fragaria_vesca	FvH4_3g09200 FvH4_3g29950
malus_domestica	MD05G1312700.v1.1 MD10G1294500.v1.1
prunus_persica	Prupe.4G047400_v2.0.a1 Prupe.4G047400_v2.0.a1
pyrus_communis	pycom05g29070 pycom05g29080 pycom10g24620 pycom10g24630 pycom10g24640
rosa_chinensis	RchiOBHm_Chr5g0008401
rosa_laevigata	RLG00000031568
rosa_multiflora	Rmu_co8007308.1_g000001 Rmu_co8292313.1_g000001 Rmu_sc0004326.1_g000003 Rmu_sc0028200.1_g000001 Rmu_ssc0000388.1_g000061
rosa_roxburghii	Rroxscaffold_1G00068090
rosa_rugosa	Rorug04G0435600
rosa_samantha	Rh5AG064200 Rh5BG061400 Rh5CG071300 Rh5DG060200 Rh5DG060300
rosa_wichuraiana	Rw5G005660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	445
AccB7I	CCANNNNNTGG	3 cut(s)	299, 331, 892
AccBSI	CCGCTC	1 cut(s)	258
AciI	CCGC	3 cut(s)	33, 256, 471
AclWI	GGATC	7 cut(s)	12, 140, 247, 384, 413, 623, 636
AcsI	RAATTY	1 cut(s)	818
AcvI	CACGTG	1 cut(s)	620
AfaI	GTAC	1 cut(s)	428
AfiI	CCNNNNNNNGG	3 cut(s)	299, 331, 892
AflIII	ACRYGT	1 cut(s)	619
AgsI	TTSAA	4 cut(s)	416, 643, 701, 816
AhlI	ACTAGT	1 cut(s)	913
AjnI	CCWGG	2 cut(s)	60, 439
AleI	CACNNNNGTG	1 cut(s)	371
AluBI	AGCT	2 cut(s)	388, 679
AluI	AGCT	2 cut(s)	388, 679
Alw26I	GTCTC	1 cut(s)	117
AlwI	GGATC	7 cut(s)	12, 140, 247, 384, 413, 623, 636
AlwNI	CAGNNNCTG	1 cut(s)	504
ApeKI	GCWGC	3 cut(s)	45, 473, 676
ApoI	RAATTY	1 cut(s)	818
AseI	ATTAAT	1 cut(s)	180
AspS9I	GGNCC	2 cut(s)	290, 852
AsuHPI	GGTGA	1 cut(s)	695
AsuII	TTCGAA	1 cut(s)	599
AvaII	GGWCC	2 cut(s)	290, 852
BamHI	GGATCC	1 cut(s)	628
BbrPI	CACGTG	1 cut(s)	620
BbvI	GCAGC	3 cut(s)	57, 460, 688
BccI	CCATC	5 cut(s)	154, 157, 341, 483, 872
BciT130I	CCWGG	2 cut(s)	62, 441
BcoDI	GTCTC	1 cut(s)	117
BcuI	ACTAGT	1 cut(s)	913
BfaI	CTAG	2 cut(s)	486, 914
BfuAI	ACCTGC	1 cut(s)	445
BisI	GCNGC	3 cut(s)	46, 474, 677
BlsI	GCNGC	3 cut(s)	47, 475, 678
Bme1390I	CCNGG	2 cut(s)	62, 441
Bme18I	GGWCC	2 cut(s)	290, 852
BmgT120I	GGNCC	2 cut(s)	290, 852
BmiI	GGNNCC	1 cut(s)	630
BmrFI	CCNGG	2 cut(s)	62, 441
BmsI	GCATC	2 cut(s)	57, 755
BpmI	CTGGAG	2 cut(s)	83, 526
Bpu14I	TTCGAA	1 cut(s)	599
Bsa29I	ATCGAT	1 cut(s)	940
BsaAI	YACGTR	1 cut(s)	620
BsaJI	CCNNGG	2 cut(s)	293, 855
BsaXI	ACNNNNNCTCC	4 cut(s)	114, 144, 540, 570
Bsc4I	CCNNNNNNNGG	3 cut(s)	299, 331, 892
Bse1I	ACTGG	4 cut(s)	509, 677, 692, 920
BseBI	CCWGG	2 cut(s)	62, 441
BseCI	ATCGAT	1 cut(s)	940
BseDI	CCNNGG	2 cut(s)	293, 855
BseLI	CCNNNNNNNGG	3 cut(s)	299, 331, 892
BseNI	ACTGG	4 cut(s)	509, 677, 692, 920
BseRI	GAGGAG	1 cut(s)	603
BseXI	GCAGC	3 cut(s)	57, 460, 688
BsgI	GTGCAG	1 cut(s)	473
BshVI	ATCGAT	1 cut(s)	940
BslFI	GGGAC	1 cut(s)	225
BslI	CCNNNNNNNGG	3 cut(s)	299, 331, 892
BsmAI	GTCTC	1 cut(s)	117
BsmFI	GGGAC	1 cut(s)	225
Bsp119I	TTCGAA	1 cut(s)	599
Bsp143I	GATC	7 cut(s)	4, 145, 252, 376, 418, 628, 937
Bsp19I	CCATGG	1 cut(s)	293
BspACI	CCGC	3 cut(s)	33, 256, 471
BspDI	ATCGAT	1 cut(s)	940
BspLI	GGNNCC	1 cut(s)	630
BspMI	ACCTGC	1 cut(s)	445
BspPI	GGATC	7 cut(s)	12, 140, 247, 384, 413, 623, 636
BspT104I	TTCGAA	1 cut(s)	599
BsrBI	CCGCTC	1 cut(s)	258
BsrI	ACTGG	4 cut(s)	509, 677, 692, 920
BssECI	CCNNGG	2 cut(s)	293, 855
BssMI	GATC	7 cut(s)	4, 145, 252, 376, 418, 628, 937
BssT1I	CCWWGG	2 cut(s)	293, 855
Bst2UI	CCWGG	2 cut(s)	62, 441
Bst4CI	ACNGT	2 cut(s)	426, 532
Bst6I	CTCTTC	1 cut(s)	781
BstBAI	YACGTR	1 cut(s)	620
BstBI	TTCGAA	1 cut(s)	599
BstC8I	GCNNGC	5 cut(s)	35, 39, 43, 573, 609
BstDSI	CCRYGG	1 cut(s)	293
BstKTI	GATC	7 cut(s)	7, 148, 255, 379, 421, 631, 940
BstMAI	GTCTC	1 cut(s)	117
BstMBI	GATC	7 cut(s)	4, 145, 252, 376, 418, 628, 937
BstNI	CCWGG	2 cut(s)	62, 441
BstNSI	RCATGY	1 cut(s)	41
BstSCI	CCNGG	2 cut(s)	60, 439
BstV1I	GCAGC	3 cut(s)	57, 460, 688
BstX2I	RGATCY	4 cut(s)	145, 252, 418, 628
BstXI	CCANNNNNNTGG	1 cut(s)	268
BstYI	RGATCY	4 cut(s)	145, 252, 418, 628
Bsu15I	ATCGAT	1 cut(s)	940
BsuTUI	ATCGAT	1 cut(s)	940
BtgI	CCRYGG	1 cut(s)	293
BtsI	GCAGTG	1 cut(s)	366
BtsIMutI	CAGTG	1 cut(s)	366
BveI	ACCTGC	1 cut(s)	445
Cac8I	GCNNGC	5 cut(s)	35, 39, 43, 573, 609
CaiI	CAGNNNCTG	1 cut(s)	504
Cfr13I	GGNCC	2 cut(s)	290, 852
ClaI	ATCGAT	1 cut(s)	940
Csp6I	GTAC	1 cut(s)	427
CviAII	CATG	7 cut(s)	38, 127, 294, 586, 654, 665, 724
CviJI	RGCY	9 cut(s)	60, 68, 298, 388, 571, 679, 719, 772, 885
CviKI_1	RGCY	9 cut(s)	60, 68, 298, 388, 571, 679, 719, 772, 885
CviQI	GTAC	1 cut(s)	427
DpnI	GATC	7 cut(s)	6, 147, 254, 378, 420, 630, 939
DpnII	GATC	7 cut(s)	4, 145, 252, 376, 418, 628, 937
Eam1104I	CTCTTC	1 cut(s)	781
EarI	CTCTTC	1 cut(s)	781
Eco130I	CCWWGG	2 cut(s)	293, 855
Eco32I	GATATC	1 cut(s)	780
Eco47I	GGWCC	2 cut(s)	290, 852
Eco72I	CACGTG	1 cut(s)	620
EcoRII	CCWGG	2 cut(s)	60, 439
EcoRV	GATATC	1 cut(s)	780
EcoT14I	CCWWGG	2 cut(s)	293, 855
EcoT22I	ATGCAT	1 cut(s)	748
ErhI	CCWWGG	2 cut(s)	293, 855
FaeI	CATG	7 cut(s)	41, 130, 297, 589, 657, 668, 727
FaqI	GGGAC	1 cut(s)	225
FatI	CATG	7 cut(s)	37, 126, 293, 585, 653, 664, 723
FauI	CCCGC	1 cut(s)	26
Fnu4HI	GCNGC	3 cut(s)	46, 474, 677
Fsp4HI	GCNGC	3 cut(s)	46, 474, 677
FspBI	CTAG	2 cut(s)	486, 914
GluI	GCNGC	3 cut(s)	46, 474, 677
GsuI	CTGGAG	2 cut(s)	83, 526
Hin1II	CATG	7 cut(s)	41, 130, 297, 589, 657, 668, 727
HincII	GTYRAC	2 cut(s)	232, 322
HindII	GTYRAC	2 cut(s)	232, 322
HinfI	GANTC	7 cut(s)	20, 111, 462, 596, 792, 812, 902
HphI	GGTGA	1 cut(s)	695
Hpy166II	GTNNAC	3 cut(s)	232, 322, 670
Hpy188I	TCNGA	2 cut(s)	461, 633
Hpy188III	TCNNGA	3 cut(s)	380, 783, 796
Hpy8I	GTNNAC	3 cut(s)	232, 322, 670
HpyAV	CCTTC	2 cut(s)	297, 539
HpyCH4III	ACNGT	2 cut(s)	426, 532
HpyCH4IV	ACGT	2 cut(s)	327, 619
HpyCH4V	TGCA	4 cut(s)	310, 454, 498, 746
HpySE526I	ACGT	2 cut(s)	327, 619
Hsp92II	CATG	7 cut(s)	41, 130, 297, 589, 657, 668, 727
Kzo9I	GATC	7 cut(s)	4, 145, 252, 376, 418, 628, 937
LmnI	GCTCC	4 cut(s)	140, 263, 616, 727
Lsp1109I	GCAGC	3 cut(s)	57, 460, 688
LweI	GCATC	2 cut(s)	57, 755
MaeI	CTAG	2 cut(s)	486, 914
MaeII	ACGT	2 cut(s)	327, 619
MaeIII	GTNAC	3 cut(s)	364, 500, 683
MalI	GATC	7 cut(s)	6, 147, 254, 378, 420, 630, 939
MbiI	CCGCTC	1 cut(s)	258
MboI	GATC	7 cut(s)	4, 145, 252, 376, 418, 628, 937
MboII	GAAGA	3 cut(s)	428, 798, 813
MflI	RGATCY	4 cut(s)	145, 252, 418, 628
MluCI	AATT	3 cut(s)	81, 602, 818
MlyI	GAGTC	1 cut(s)	456
MnlI	CCTC	9 cut(s)	58, 99, 355, 501, 517, 542, 586, 624, 782
Mph1103I	ATGCAT	1 cut(s)	748
MseI	TTAA	2 cut(s)	180, 207
MslI	CAYNNNNRTG	2 cut(s)	266, 371
MspA1I	CMGCKG	1 cut(s)	473
MspR9I	CCNGG	2 cut(s)	62, 441
MvaI	CCWGG	2 cut(s)	62, 441
NcoI	CCATGG	1 cut(s)	293
NdeII	GATC	7 cut(s)	4, 145, 252, 376, 418, 628, 937
NlaIII	CATG	7 cut(s)	41, 130, 297, 589, 657, 668, 727
NlaIV	GGNNCC	1 cut(s)	630
NmuCI	GTSAC	2 cut(s)	364, 683
NsiI	ATGCAT	1 cut(s)	748
NspI	RCATGY	1 cut(s)	41
NspV	TTCGAA	1 cut(s)	599
OliI	CACNNNNGTG	1 cut(s)	371
PaeI	GCATGC	1 cut(s)	41
PfeI	GAWTC	6 cut(s)	20, 111, 596, 792, 812, 902
PflMI	CCANNNNNTGG	3 cut(s)	299, 331, 892
PfoI	TCCNGGA	1 cut(s)	439
PkrI	GCNGC	3 cut(s)	47, 475, 678
PleI	GAGTC	1 cut(s)	456
PmaCI	CACGTG	1 cut(s)	620
PmlI	CACGTG	1 cut(s)	620
PpsI	GAGTC	1 cut(s)	456
Ppu21I	YACGTR	1 cut(s)	620
PshBI	ATTAAT	1 cut(s)	180
Psp6I	CCWGG	2 cut(s)	60, 439
PspCI	CACGTG	1 cut(s)	620
PspGI	CCWGG	2 cut(s)	60, 439
PspN4I	GGNNCC	1 cut(s)	630
PspPI	GGNCC	2 cut(s)	290, 852
PstNI	CAGNNNCTG	1 cut(s)	504
PsuI	RGATCY	4 cut(s)	145, 252, 418, 628
RsaI	GTAC	1 cut(s)	428
RsaNI	GTAC	1 cut(s)	427
RseI	CAYNNNNRTG	2 cut(s)	266, 371
SaqAI	TTAA	2 cut(s)	180, 207
SatI	GCNGC	3 cut(s)	46, 474, 677
Sau3AI	GATC	7 cut(s)	4, 145, 252, 376, 418, 628, 937
Sau96I	GGNCC	2 cut(s)	290, 852
SchI	GAGTC	1 cut(s)	456
ScrFI	CCNGG	2 cut(s)	62, 441
SfaNI	GCATC	2 cut(s)	57, 755
SfuI	TTCGAA	1 cut(s)	599
SinI	GGWCC	2 cut(s)	290, 852
SmiMI	CAYNNNNRTG	2 cut(s)	266, 371
SpeI	ACTAGT	1 cut(s)	913
SphI	GCATGC	1 cut(s)	41
Sse9I	AATT	3 cut(s)	81, 602, 818
SsiI	CCGC	3 cut(s)	33, 256, 471
SspMI	CTAG	2 cut(s)	486, 914
StyD4I	CCNGG	2 cut(s)	60, 439
StyI	CCWWGG	2 cut(s)	293, 855
TaaI	ACNGT	2 cut(s)	426, 532
TaiI	ACGT	2 cut(s)	330, 622
TaqI	TCGA	4 cut(s)	522, 599, 822, 940
TasI	AATT	3 cut(s)	81, 602, 818
TfiI	GAWTC	6 cut(s)	20, 111, 596, 792, 812, 902
Tru1I	TTAA	2 cut(s)	180, 207
Tru9I	TTAA	2 cut(s)	180, 207
TscAI	CASTG	1 cut(s)	373
TseFI	GTSAC	2 cut(s)	364, 683
TseI	GCWGC	3 cut(s)	45, 473, 676
Tsp45I	GTSAC	2 cut(s)	364, 683
TspDTI	ATGAA	6 cut(s)	27, 33, 103, 728, 776, 840
TspGWI	ACGGA	1 cut(s)	127
TspRI	CASTG	1 cut(s)	373
Van91I	CCANNNNNTGG	3 cut(s)	299, 331, 892
VpaK11BI	GGWCC	2 cut(s)	290, 852
VspI	ATTAAT	1 cut(s)	180
XapI	RAATTY	1 cut(s)	818
XceI	RCATGY	1 cut(s)	41
XcmI	CCANNNNNNNNNTGG	1 cut(s)	862
XspI	CTAG	2 cut(s)	486, 914
Zsp2I	ATGCAT	1 cut(s)	748

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.