AT4G31010

CRS2-associated factor 1

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
15106558 .. 15108636
2079 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G31010.1

Sequence Viewer

Length: 1218 bp
ATGTTCTTGATTCGTCTCTCCCGCCATAACCCATCATCTTTTACACTTCTCACGCGCCGCCTTCACGACCAAACAATTTCCTCGTCACGACTCCGAGACCTTTACAATTTTCAATCACCGCCGCCTTTGTCGTCGTCAGCCTCCGAAAATCCTGACTTTAACCAGAAAAACAACAATAAGAAGAAGCCAAAGCCGCAGTACCGTCCACCTTCTTCGCTGGAAGGTGTGAAGACGGTTCACTCTGATCTTCCGTTCGATTTCCGGTTCAGTTACACAGAGAGTTGCTCAAATGTGAGGCCAATTGGCTTGAGAGAACCAAAGTATTCACCTTTTGGTCCTGATCGATTGGACCGGGAATGGACCGGTGTCTGTGCGCCGGCGGTTAATCCAAAGGTAGAGTCTGTTGACGGAGTGGAGGATCCGAAGCTGGAAGAGAAAAGAAGGAAAGTGAGAGAGAAGATTCAAGGGGCATCACTCACTGAAGCTGAAAGGAAATTTCTGGTGGAGCTGTGTCAGAGGAACAAAACTAAAAGACAAGTCAATCTTGGGCGAGATGGTTTGACTCATAATATGCTGAATGATGTCTATAATCATTGGAAACATGCTGAAGCAGTTCGGGTCAAATGTCTTGGAGTCCCAACCCTCGATATGAAGAACGTTATATTCCACCTTGAGGACAAAACGTTTGGCCAGGTAGTCTCTAAACACTCTGGTACACTTGTGTTATATAGAGGGCGAAACTACGATCCCAAGAAAAGGCCTAAGATCCCATTGATGTTGTGGAAACCTCATGAACCAGTGTACCCTAGGCTGATTAAAACAACAATTGATGGTCTAAGCATCGATGAGACCAAAGCAATGAGAAAGAAAGGGCTAGCTGTTCCTGCCTTGACAAAACTTGCCAAGAATGGTTATTACGGTAGTCTTGTTCCAATGGTGAGAGATGCTTTCCTCGTGAGTGAATTAGTACGTATTGATTGCTTGGGACTAGAGAGAAAGGATTACAAGAAAATTGGAGCAAAGCTTAGGGATTTGGTCCCTTGCATCCTGGTGACATTTGACAAGGAGCAGGTCGTGATTTGGAGAGGTAAAGACTATAAGCCACCCAAAGAAGATGATGAATATTCGTCCTTCATTCATCGTGAATCTTCCATAGACTCTGATGTCGATTTAAGTTGTAGCAGAGGGGCTCAAGATTCTCCTGACGAGACAACCTAG

Protein Analysis

405

Amino Acids

46.39

Weight (kDa)

9.43

Isoelectric Point (pI)

41.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRS1_YhbY PF01985 159 - 244 2.3e-18 CRS1 / YhbY (CRM) domain
CRS1_YhbY PF01985 279 - 362 8.2e-12 CRS1 / YhbY (CRM) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012010)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1163
Acc36I ACCTGC 1 cut(s) 1060
AccII CGCG 1 cut(s) 55
AciI CCGC 6 cut(s) 22, 58, 119, 122, 194, 380
AclI AACGTT 2 cut(s) 657, 683
AclWI GGATC 4 cut(s) 413, 426, 740, 760
AcoI YGGCCR 1 cut(s) 688
AcsI RAATTY 1 cut(s) 494
AcuI CTGAAG 2 cut(s) 501, 627
AfaI GTAC 4 cut(s) 200, 715, 803, 969
AfiI CCNNNNNNNGG 2 cut(s) 673, 756
AgeI ACCGGT 1 cut(s) 362
AgsI TTSAA 2 cut(s) 113, 464
AjnI CCWGG 2 cut(s) 690, 1047
AluBI AGCT 5 cut(s) 427, 485, 508, 878, 1024
AluI AGCT 5 cut(s) 427, 485, 508, 878, 1024
Alw26I GTCTC 5 cut(s) 20, 90, 703, 842, 1202
AlwI GGATC 4 cut(s) 413, 426, 740, 760
AoxI GGCC 3 cut(s) 296, 688, 758
ApoI RAATTY 1 cut(s) 494
ArsI GACNNNNNNTTYG 4 cut(s) 383, 415, 668, 700
AsiGI ACCGGT 1 cut(s) 362
Asp700I GAANNNNTTC 1 cut(s) 612
AspA2I CCTAGG 1 cut(s) 806
AspLEI GCGC 2 cut(s) 57, 376
AspS9I GGNCC 4 cut(s) 335, 349, 360, 1036
AsuC2I CCSGG 1 cut(s) 353
AsuHPI GGTGA 4 cut(s) 108, 318, 949, 1063
AsuNHI GCTAGC 1 cut(s) 874
AvaII GGWCC 4 cut(s) 335, 349, 360, 1036
AvrII CCTAGG 1 cut(s) 806
BaeI ACNNNNGTAYC 4 cut(s) 705, 738, 785, 818
BalI TGGCCA 1 cut(s) 690
BamHI GGATCC 1 cut(s) 418
BanII GRGCYC 1 cut(s) 1192
BauI CACGAG 1 cut(s) 953
BbsI GAAGAC 1 cut(s) 236
BccI CCATC 3 cut(s) 40, 548, 824
BciT130I CCWGG 2 cut(s) 692, 1049
BcnI CCSGG 1 cut(s) 353
BcoDI GTCTC 5 cut(s) 20, 90, 703, 842, 1202
BfaI CTAG 4 cut(s) 807, 875, 989, 1216
BfuAI ACCTGC 1 cut(s) 1060
BisI GCNGC 3 cut(s) 58, 122, 194
BlnI CCTAGG 1 cut(s) 806
BlsI GCNGC 3 cut(s) 59, 123, 195
Bme1390I CCNGG 3 cut(s) 353, 692, 1049
Bme18I GGWCC 4 cut(s) 335, 349, 360, 1036
BmgT120I GGNCC 4 cut(s) 335, 349, 360, 1036
BmiI GGNNCC 2 cut(s) 420, 1038
BmrFI CCNGG 3 cut(s) 353, 692, 1049
BmsI GCATC 4 cut(s) 479, 849, 934, 1053
BmtI GCTAGC 1 cut(s) 878
BoxI GACNNNNGTC 1 cut(s) 365
BpiI GAAGAC 1 cut(s) 236
BplI GAGNNNNNCTC 2 cut(s) 269, 301
Bpu10I CCTNAGC 1 cut(s) 1025
BpuEI CTTGAG 3 cut(s) 328, 692, 1176
BpuMI CCSGG 1 cut(s) 353
Bsa29I ATCGAT 2 cut(s) 343, 843
BsaAI YACGTR 1 cut(s) 971
BsaI GGTCTC 2 cut(s) 90, 842
BsaJI CCNNGG 1 cut(s) 806
BsaWI WCCGGW 2 cut(s) 261, 362
Bsc4I CCNNNNNNNGG 2 cut(s) 673, 756
Bse118I RCCGGY 2 cut(s) 362, 376
Bse1I ACTGG 1 cut(s) 797
Bse3DI GCAATG 1 cut(s) 864
BseBI CCWGG 2 cut(s) 692, 1049
BseCI ATCGAT 2 cut(s) 343, 843
BseDI CCNNGG 1 cut(s) 806
BseGI GGATG 1 cut(s) 1044
BseLI CCNNNNNNNGG 2 cut(s) 673, 756
BseMI GCAATG 1 cut(s) 864
BseNI ACTGG 1 cut(s) 797
Bsh1236I CGCG 1 cut(s) 55
BshFI GGCC 3 cut(s) 298, 690, 760
BshTI ACCGGT 1 cut(s) 362
BshVI ATCGAT 2 cut(s) 343, 843
BsiSI CCGG 4 cut(s) 262, 352, 363, 377
BslFI GGGAC 3 cut(s) 620, 999, 1022
BslI CCNNNNNNNGG 2 cut(s) 673, 756
BsmAI GTCTC 5 cut(s) 20, 90, 703, 842, 1202
BsmBI CGTCTC 1 cut(s) 20
BsmFI GGGAC 3 cut(s) 620, 999, 1022
BsnI GGCC 3 cut(s) 298, 690, 760
Bso31I GGTCTC 2 cut(s) 90, 842
Bsp1286I GDGCHC 1 cut(s) 1192
Bsp143I GATC 5 cut(s) 244, 340, 418, 745, 765
BspACI CCGC 6 cut(s) 22, 58, 119, 122, 194, 380
BspANI GGCC 3 cut(s) 298, 690, 760
BspDI ATCGAT 2 cut(s) 343, 843
BspFNI CGCG 1 cut(s) 55
BspHI TCATGA 1 cut(s) 790
BspLI GGNNCC 2 cut(s) 420, 1038
BspMI ACCTGC 1 cut(s) 1060
BspOI GCTAGC 1 cut(s) 878
BspPI GGATC 4 cut(s) 413, 426, 740, 760
BspTNI GGTCTC 2 cut(s) 90, 842
BsrDI GCAATG 1 cut(s) 864
BsrFI RCCGGY 2 cut(s) 362, 376
BsrI ACTGG 1 cut(s) 797
BssAI RCCGGY 2 cut(s) 362, 376
BssECI CCNNGG 1 cut(s) 806
BssMI GATC 5 cut(s) 244, 340, 418, 745, 765
BssSI CACGAG 1 cut(s) 953
BssT1I CCWWGG 1 cut(s) 806
Bst2BI CACGAG 1 cut(s) 953
Bst2UI CCWGG 2 cut(s) 692, 1049
Bst4CI ACNGT 3 cut(s) 203, 235, 920
Bst6I CTCTTC 1 cut(s) 426
BstBAI YACGTR 1 cut(s) 971
BstC8I GCNNGC 2 cut(s) 378, 876
BstDEI CTNAG 3 cut(s) 762, 836, 1025
BstF5I GGATG 1 cut(s) 1044
BstFNI CGCG 1 cut(s) 55
BstHHI GCGC 2 cut(s) 57, 376
BstKTI GATC 5 cut(s) 247, 343, 421, 748, 768
BstMAI GTCTC 5 cut(s) 20, 90, 703, 842, 1202
BstMBI GATC 5 cut(s) 244, 340, 418, 745, 765
BstMWI GCNNNNNNNGC 2 cut(s) 193, 884
BstNI CCWGG 2 cut(s) 692, 1049
BstNSI RCATGY 1 cut(s) 605
BstPAI GACNNNNGTC 1 cut(s) 365
BstSCI CCNGG 3 cut(s) 351, 690, 1047
BstSNI TACGTA 1 cut(s) 971
BstUI CGCG 1 cut(s) 55
BstV2I GAAGAC 1 cut(s) 236
BstX2I RGATCY 2 cut(s) 418, 765
BstYI RGATCY 2 cut(s) 418, 765
Bsu15I ATCGAT 2 cut(s) 343, 843
BsuRI GGCC 3 cut(s) 298, 690, 760
BsuTUI ATCGAT 2 cut(s) 343, 843
BtsCI GGATG 1 cut(s) 1044
BtsIMutI CAGTG 2 cut(s) 477, 804
BveI ACCTGC 1 cut(s) 1060
Cac8I GCNNGC 2 cut(s) 378, 876
CciI TCATGA 1 cut(s) 790
CfoI GCGC 2 cut(s) 57, 376
Cfr10I RCCGGY 2 cut(s) 362, 376
Cfr13I GGNCC 4 cut(s) 335, 349, 360, 1036
ClaI ATCGAT 2 cut(s) 343, 843
Csp6I GTAC 4 cut(s) 199, 714, 802, 968
CspAI ACCGGT 1 cut(s) 362
CviAII CATG 2 cut(s) 602, 791
CviQI GTAC 4 cut(s) 199, 714, 802, 968
DdeI CTNAG 3 cut(s) 762, 836, 1025
DpnI GATC 5 cut(s) 246, 342, 420, 747, 767
DpnII GATC 5 cut(s) 244, 340, 418, 745, 765
DrdI GACNNNNNNGTC 1 cut(s) 1163
DseDI GACNNNNNNGTC 1 cut(s) 1163
EaeI YGGCCR 1 cut(s) 688
Eam1104I CTCTTC 1 cut(s) 426
EarI CTCTTC 1 cut(s) 426
Eco105I TACGTA 1 cut(s) 971
Eco130I CCWWGG 1 cut(s) 806
Eco147I AGGCCT 1 cut(s) 760
Eco24I GRGCYC 1 cut(s) 1192
Eco31I GGTCTC 2 cut(s) 90, 842
Eco47I GGWCC 4 cut(s) 335, 349, 360, 1036
Eco57I CTGAAG 2 cut(s) 501, 627
EcoRII CCWGG 2 cut(s) 690, 1047
EcoT14I CCWWGG 1 cut(s) 806
EcoT38I GRGCYC 1 cut(s) 1192
ErhI CCWWGG 1 cut(s) 806
Esp3I CGTCTC 1 cut(s) 20
FaeI CATG 2 cut(s) 605, 794
FalI AAGNNNNNCTT 2 cut(s) 528, 560
FaqI GGGAC 3 cut(s) 620, 999, 1022
FatI CATG 2 cut(s) 601, 790
FauI CCCGC 1 cut(s) 29
Fnu4HI GCNGC 3 cut(s) 58, 122, 194
FokI GGATG 1 cut(s) 1031
FriOI GRGCYC 1 cut(s) 1192
Fsp4HI GCNGC 3 cut(s) 58, 122, 194
FspBI CTAG 4 cut(s) 807, 875, 989, 1216
GlaI GCGC 2 cut(s) 56, 375
GluI GCNGC 3 cut(s) 58, 122, 194
HaeIII GGCC 3 cut(s) 298, 690, 760
HapII CCGG 4 cut(s) 262, 352, 363, 377
HhaI GCGC 2 cut(s) 57, 376
Hin1II CATG 2 cut(s) 605, 794
Hin6I GCGC 2 cut(s) 55, 374
HinP1I GCGC 2 cut(s) 55, 374
HincII GTYRAC 1 cut(s) 406
HindII GTYRAC 1 cut(s) 406
HindIII AAGCTT 1 cut(s) 1022
HinfI GANTC 9 cut(s) 10, 90, 398, 460, 562, 633, 1145, 1157, 1196
HpaII CCGG 4 cut(s) 262, 352, 363, 377
HphI GGTGA 4 cut(s) 108, 318, 949, 1063
Hpy166II GTNNAC 5 cut(s) 206, 238, 406, 716, 802
Hpy188I TCNGA 6 cut(s) 95, 145, 244, 423, 516, 1162
Hpy8I GTNNAC 5 cut(s) 206, 238, 406, 716, 802
Hpy99I CGWCG 1 cut(s) 136
HpyAV CCTTC 5 cut(s) 71, 215, 219, 435, 1141
HpyCH4III ACNGT 3 cut(s) 203, 235, 920
HpyCH4IV ACGT 3 cut(s) 657, 683, 970
HpyCH4V TGCA 1 cut(s) 1044
HpyF10VI GCNNNNNNNGC 2 cut(s) 193, 884
HpyF3I CTNAG 3 cut(s) 762, 836, 1025
HpySE526I ACGT 3 cut(s) 657, 683, 970
Hsp92II CATG 2 cut(s) 605, 794
HspAI GCGC 2 cut(s) 55, 374
KroI GCCGGC 1 cut(s) 376
KroNI GCCGGC 1 cut(s) 378
Kzo9I GATC 5 cut(s) 244, 340, 418, 745, 765
LmnI GCTCC 3 cut(s) 505, 1016, 1066
LweI GCATC 4 cut(s) 479, 849, 934, 1053
MaeI CTAG 4 cut(s) 807, 875, 989, 1216
MaeII ACGT 3 cut(s) 657, 683, 970
MaeIII GTNAC 3 cut(s) 84, 269, 1051
MalI GATC 5 cut(s) 246, 342, 420, 747, 767
MboI GATC 5 cut(s) 244, 340, 418, 745, 765
MboII GAAGA 9 cut(s) 193, 204, 239, 241, 443, 469, 664, 1124, 1140
MfeI CAATTG 2 cut(s) 300, 825
MflI RGATCY 2 cut(s) 418, 765
MhlI GDGCHC 1 cut(s) 1192
MlsI TGGCCA 1 cut(s) 690
MluCI AATT 7 cut(s) 75, 106, 300, 494, 825, 962, 1011
MluNI TGGCCA 1 cut(s) 690
MlyI GAGTC 5 cut(s) 84, 407, 556, 642, 1151
Mox20I TGGCCA 1 cut(s) 690
MreI CGCCGGCG 1 cut(s) 376
MroNI GCCGGC 1 cut(s) 376
MroXI GAANNNNTTC 1 cut(s) 612
MscI TGGCCA 1 cut(s) 690
MseI TTAA 4 cut(s) 159, 384, 816, 1172
MslI CAYNNNNRTG 1 cut(s) 1049
Msp20I TGGCCA 1 cut(s) 690
MspI CCGG 4 cut(s) 262, 352, 363, 377
MspR9I CCNGG 3 cut(s) 353, 692, 1049
MunI CAATTG 2 cut(s) 300, 825
MvaI CCWGG 2 cut(s) 692, 1049
MvnI CGCG 1 cut(s) 55
MwoI GCNNNNNNNGC 2 cut(s) 193, 884
NaeI GCCGGC 1 cut(s) 378
NciI CCSGG 1 cut(s) 353
NdeII GATC 5 cut(s) 244, 340, 418, 745, 765
NgoMIV GCCGGC 1 cut(s) 376
NheI GCTAGC 1 cut(s) 874
NlaIII CATG 2 cut(s) 605, 794
NlaIV GGNNCC 2 cut(s) 420, 1038
NmuCI GTSAC 2 cut(s) 84, 1051
NspI RCATGY 1 cut(s) 605
PagI TCATGA 1 cut(s) 790
PceI AGGCCT 1 cut(s) 760
PdiI GCCGGC 1 cut(s) 378
PdmI GAANNNNTTC 1 cut(s) 612
PfeI GAWTC 4 cut(s) 10, 460, 1145, 1196
PinAI ACCGGT 1 cut(s) 362
PkrI GCNGC 3 cut(s) 59, 123, 195
PleI GAGTC 5 cut(s) 84, 406, 556, 641, 1151
PpsI GAGTC 5 cut(s) 84, 406, 556, 641, 1151
Ppu21I YACGTR 1 cut(s) 971
PshAI GACNNNNGTC 1 cut(s) 365
Psp1406I AACGTT 2 cut(s) 657, 683
Psp6I CCWGG 2 cut(s) 690, 1047
PspGI CCWGG 2 cut(s) 690, 1047
PspN4I GGNNCC 2 cut(s) 420, 1038
PspPI GGNCC 4 cut(s) 335, 349, 360, 1036
PsuI RGATCY 2 cut(s) 418, 765
RsaI GTAC 4 cut(s) 200, 715, 803, 969
RsaNI GTAC 4 cut(s) 199, 714, 802, 968
RseI CAYNNNNRTG 1 cut(s) 1049
SaqAI TTAA 4 cut(s) 159, 384, 816, 1172
SatI GCNGC 3 cut(s) 58, 122, 194
Sau3AI GATC 5 cut(s) 244, 340, 418, 745, 765
Sau96I GGNCC 4 cut(s) 335, 349, 360, 1036
SchI GAGTC 5 cut(s) 84, 407, 556, 642, 1151
ScrFI CCNGG 3 cut(s) 353, 692, 1049
SduI GDGCHC 1 cut(s) 1192
SfaNI GCATC 4 cut(s) 479, 849, 934, 1053
SgrAI CRCCGGYG 1 cut(s) 376
SinI GGWCC 4 cut(s) 335, 349, 360, 1036
SmiMI CAYNNNNRTG 1 cut(s) 1049
SmlI CTYRAG 3 cut(s) 307, 671, 1191
SmoI CTYRAG 3 cut(s) 307, 671, 1191
SnaBI TACGTA 1 cut(s) 971
Sse9I AATT 7 cut(s) 75, 106, 300, 494, 825, 962, 1011
SseBI AGGCCT 1 cut(s) 760
SsiI CCGC 6 cut(s) 22, 58, 119, 122, 194, 380
SspI AATATT 1 cut(s) 1124
SspMI CTAG 4 cut(s) 807, 875, 989, 1216
StuI AGGCCT 1 cut(s) 760
StyD4I CCNGG 3 cut(s) 351, 690, 1047
StyI CCWWGG 1 cut(s) 806
TaaI ACNGT 3 cut(s) 203, 235, 920
TaiI ACGT 3 cut(s) 660, 686, 973
TaqI TCGA 5 cut(s) 255, 343, 645, 843, 1167
TasI AATT 7 cut(s) 75, 106, 300, 494, 825, 962, 1011
TauI GCSGC 3 cut(s) 60, 124, 196
TfiI GAWTC 4 cut(s) 10, 460, 1145, 1196
Tru1I TTAA 4 cut(s) 159, 384, 816, 1172
Tru9I TTAA 4 cut(s) 159, 384, 816, 1172
TscAI CASTG 2 cut(s) 484, 804
TseFI GTSAC 2 cut(s) 84, 1051
Tsp45I GTSAC 2 cut(s) 84, 1051
TspDTI ATGAA 5 cut(s) 665, 807, 1123, 1127, 1134
TspGWI ACGGA 2 cut(s) 240, 423
TspRI CASTG 2 cut(s) 484, 804
VpaK11BI GGWCC 4 cut(s) 335, 349, 360, 1036
XapI RAATTY 1 cut(s) 494
XceI RCATGY 1 cut(s) 605
XcmI CCANNNNNNNNNTGG 1 cut(s) 777
XmaJI CCTAGG 1 cut(s) 806
XmnI GAANNNNTTC 1 cut(s) 612
XspI CTAG 4 cut(s) 807, 875, 989, 1216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.