Rroxscaffold_4G00303580

CRS2-associated factor 1

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
23949476 .. 23952793
3318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00303580.1

Sequence Viewer

Length: 1254 bp
ATGTTCCTCACCAAGCTCTCCCGCCAAAACCCAAACCCACTCGCCCTCATTTCCACGCGCCACCTCTCCACCCTCCACGACCGCTACTCCTTCAAACCCCCACCCTCCCTTTCCCCGAACCCCCAAGACCACCCCAACCCCAACCCTAACCCTAACCCTAATTTCAAGAAGAAGCAGAAGCCCCGGTACCGTCCGCCGTCGTCTCTCGATCGCGAGGGTCAGGAGCCGATACATTCCGATTTGCCGTTCGATTTCAGGTACAGCTACACCGAGAGCAGCCCGGAAGCGCGGCCCATTGGGCTGCGGGAGCCCAAGTACTCGCCTTTTGGGCCGGGGCGGTTGGACCGGCCGTGGATCGGGGTCTGTGCCCCGGCCGTGGACCCGAAGGTGAGGTCCGTGGAGGGGGCGGAGGAGGAGGAGCTGAAGTTGGAGGAGGAGAGGAGGAGGAGGAGAGAAGCGGTGCAGGGAGAGCCGCTCAGTTCGGCTGAGAGGAAAATTTTGGTGGAGAAATGTCAGAGAGGGAAAACCAAGAAGCAAATCAATTTGGGGAGAGATGGTTTGACTCACAATATGCTGAATGATATTCATAACCATTGGAAACATGAAGAAGCAGTGAGGATAAAATGTCAAGGTGTTCCGACTGTTGACATGAGAAATGTTTGCACCCAGCTCGAGGACAAAACCTTTGGAAAGATCATCTGTAGACATGGTAGTCTAATCATATTGTTCAGAGGCAGGAACTATAATCCCAAGAAGAGGCCTGTGATTCCATTAATGTTGTGGAAGCCACATGAGCCAAAATATCCCAAATTGATCAAAACTACGATTGATGGGCTAAGCATCGAGGAAACAAAGGAAATGAGGAAGAGAGGATTAGTTGTCCCTGCTTTAACAAAACTTGTTGAAACTGCAGCCAGGAATGGTTACTATGGTAATCTGGTACCCATGGTTAGAGATGCGTTTCTCTCCTCTGAGCTGGTCCGGATAGACTGCCAGGGTCTTGAGAAGAGTGATTACAAGAAAATAGGCTGCAAACTTCGGGAGCTCGTGCCTTGTATCCTGGTGACATTTGATAAGGAACAGATTGTGGTTTGGAAGGGCAAGGACTATAAGCCTGTAGAGGATGCCTACTTCCTTCCAGAACGAGAACTGTTTGATAGTCCAGAAAGTGATGTGGTTTCTGGTGCAGAGCGGTGGGATAGTTCAGATGACAATAGTAGCCAAACTGAGTACTACTCTGGTGACGATGAGTAG

Protein Analysis

417

Amino Acids

47.96

Weight (kDa)

8.89

Isoelectric Point (pI)

50.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRS1_YhbY PF01985 159 - 244 3.9e-18 CRS1 / YhbY (CRM) domain
CRS1_YhbY PF01985 279 - 366 2.6e-08 CRS1 / YhbY (CRM) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012010)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 711
Acc65I GGTACC 2 cut(s) 186, 940
AccB1I GGYRCC 2 cut(s) 186, 940
AccBSI CCGCTC 2 cut(s) 475, 1192
AccI GTMKAC 1 cut(s) 703
AccII CGCG 3 cut(s) 58, 213, 289
AccIII TCCGGA 1 cut(s) 981
AclWI GGATC 1 cut(s) 362
AcoI YGGCCR 2 cut(s) 347, 372
AcsI RAATTY 1 cut(s) 495
AcuI CTGAAG 1 cut(s) 443
AfaI GTAC 5 cut(s) 188, 260, 317, 942, 1232
AfiI CCNNNNNNNGG 5 cut(s) 356, 376, 402, 673, 756
AgsI TTSAA 3 cut(s) 94, 166, 905
AjnI CCWGG 3 cut(s) 914, 993, 1059
AluBI AGCT 6 cut(s) 16, 264, 421, 670, 976, 1045
AluI AGCT 6 cut(s) 16, 264, 421, 670, 976, 1045
Alw21I GWGCWC 1 cut(s) 1047
Alw26I GTCTC 1 cut(s) 207
AlwI GGATC 1 cut(s) 362
Ama87I CYCGRG 1 cut(s) 671
Aor13HI TCCGGA 1 cut(s) 981
AoxI GGCC 5 cut(s) 290, 329, 347, 372, 758
ApeKI GCWGC 4 cut(s) 276, 301, 911, 1029
ApoI RAATTY 1 cut(s) 495
ArsI GACNNNNNNTTYG 4 cut(s) 377, 409, 668, 700
AseI ATTAAT 1 cut(s) 773
Asp718I GGTACC 2 cut(s) 186, 940
AspLEI GCGC 2 cut(s) 60, 289
AspS9I GGNCC 6 cut(s) 291, 329, 343, 379, 393, 979
AsuC2I CCSGG 4 cut(s) 184, 281, 333, 371
AsuHPI GGTGA 3 cut(s) 400, 1075, 1253
AvaI CYCGRG 1 cut(s) 671
AvaII GGWCC 4 cut(s) 343, 379, 393, 979
BaeGI GKGCMC 1 cut(s) 370
BanI GGYRCC 2 cut(s) 186, 940
BanII GRGCYC 2 cut(s) 312, 1047
BarI GAAGNNNNNNTAC 4 cut(s) 170, 202, 998, 1030
BauI CACGAG 1 cut(s) 1046
Bbv12I GWGCWC 1 cut(s) 1047
BbvI GCAGC 4 cut(s) 288, 288, 923, 1016
BccI CCATC 2 cut(s) 548, 824
BceAI ACGGC 4 cut(s) 181, 229, 334, 359
BcgI CGANNNNNNTGC 2 cut(s) 652, 686
BciT130I CCWGG 3 cut(s) 916, 995, 1061
BciVI GTATCC 1 cut(s) 1067
BclI TGATCA 1 cut(s) 813
BcnI CCSGG 4 cut(s) 184, 281, 333, 371
BcoDI GTCTC 1 cut(s) 207
BfmI CTRYAG 3 cut(s) 700, 909, 1116
BfuI GTATCC 1 cut(s) 1067
BglI GCCNNNNNGGC 2 cut(s) 298, 328
BisI GCNGC 6 cut(s) 277, 290, 302, 473, 912, 1030
BlpI GCTNAGC 1 cut(s) 836
BlsI GCNGC 6 cut(s) 278, 291, 303, 474, 913, 1031
BmcAI AGTACT 2 cut(s) 317, 1232
Bme1390I CCNGG 7 cut(s) 184, 281, 333, 371, 916, 995, 1061
Bme18I GGWCC 4 cut(s) 343, 379, 393, 979
BmeT110I CYCGRG 1 cut(s) 671
BmgT120I GGNCC 6 cut(s) 291, 329, 343, 379, 393, 979
BmiI GGNNCC 5 cut(s) 188, 225, 309, 381, 942
BmrFI CCNGG 7 cut(s) 184, 281, 333, 371, 916, 995, 1061
BmsI GCATC 3 cut(s) 849, 946, 1114
BplI GAGNNNNNCTC 4 cut(s) 459, 491, 1220, 1252
Bpu1102I GCTNAGC 1 cut(s) 836
BpuEI CTTGAG 1 cut(s) 1022
BpuMI CCSGG 4 cut(s) 184, 281, 333, 371
BsaJI CCNNGG 8 cut(s) 182, 332, 350, 369, 375, 396, 945, 994
BsaWI WCCGGW 1 cut(s) 981
BsaXI ACNNNNNCTCC 8 cut(s) 71, 101, 299, 329, 410, 440, 541, 571
Bsc4I CCNNNNNNNGG 5 cut(s) 356, 376, 402, 673, 756
Bse118I RCCGGY 1 cut(s) 345
BseAI TCCGGA 1 cut(s) 981
BseBI CCWGG 3 cut(s) 916, 995, 1061
BseDI CCNNGG 8 cut(s) 182, 332, 350, 369, 375, 396, 945, 994
BseGI GGATG 1 cut(s) 1129
BseLI CCNNNNNNNGG 5 cut(s) 356, 376, 402, 673, 756
BseMII CTCAG 4 cut(s) 477, 490, 963, 1218
BseSI GKGCMC 1 cut(s) 370
BseX3I CGGCCG 2 cut(s) 347, 372
BseXI GCAGC 4 cut(s) 288, 288, 923, 1016
BseYI CCCAGC 1 cut(s) 666
BsgI GTGCAG 2 cut(s) 482, 1206
Bsh1236I CGCG 3 cut(s) 58, 213, 289
Bsh1285I CGRYCG 4 cut(s) 82, 211, 350, 375
BshFI GGCC 5 cut(s) 292, 331, 349, 374, 760
BshNI GGYRCC 2 cut(s) 186, 940
BsiEI CGRYCG 4 cut(s) 82, 211, 350, 375
BsiHKAI GWGCWC 1 cut(s) 1047
BsiHKCI CYCGRG 1 cut(s) 671
BsiSI CCGG 6 cut(s) 184, 281, 332, 346, 371, 982
BslFI GGGAC 1 cut(s) 866
BslI CCNNNNNNNGG 5 cut(s) 356, 376, 402, 673, 756
BsmAI GTCTC 1 cut(s) 207
BsmBI CGTCTC 1 cut(s) 207
BsmFI GGGAC 1 cut(s) 866
BsnI GGCC 5 cut(s) 292, 331, 349, 374, 760
BsoBI CYCGRG 1 cut(s) 671
Bsp1286I GDGCHC 3 cut(s) 312, 370, 1047
Bsp13I TCCGGA 1 cut(s) 981
Bsp143I GATC 4 cut(s) 208, 354, 693, 813
Bsp1720I GCTNAGC 1 cut(s) 836
Bsp19I CCATGG 1 cut(s) 945
Bsp68I TCGCGA 1 cut(s) 213
BspANI GGCC 5 cut(s) 292, 331, 349, 374, 760
BspCNI CTCAG 4 cut(s) 478, 489, 964, 1219
BspEI TCCGGA 1 cut(s) 981
BspFNI CGCG 3 cut(s) 58, 213, 289
BspLI GGNNCC 5 cut(s) 188, 225, 309, 381, 942
BspMAI CTGCAG 1 cut(s) 913
BspPI GGATC 1 cut(s) 362
BspT107I GGYRCC 2 cut(s) 186, 940
BsrBI CCGCTC 2 cut(s) 475, 1192
BsrFI RCCGGY 1 cut(s) 345
BssAI RCCGGY 1 cut(s) 345
BssECI CCNNGG 8 cut(s) 182, 332, 350, 369, 375, 396, 945, 994
BssMI GATC 4 cut(s) 208, 354, 693, 813
BssSI CACGAG 1 cut(s) 1046
BssT1I CCWWGG 1 cut(s) 945
Bst2BI CACGAG 1 cut(s) 1046
Bst2UI CCWGG 3 cut(s) 916, 995, 1061
Bst4CI ACNGT 3 cut(s) 191, 643, 1152
Bst6I CTCTTC 3 cut(s) 749, 860, 1001
BstDEI CTNAG 5 cut(s) 476, 486, 836, 972, 1227
BstDSI CCRYGG 4 cut(s) 350, 375, 396, 945
BstF5I GGATG 1 cut(s) 1129
BstFNI CGCG 3 cut(s) 58, 213, 289
BstHHI GCGC 2 cut(s) 60, 289
BstKTI GATC 4 cut(s) 211, 357, 696, 816
BstMAI GTCTC 1 cut(s) 207
BstMBI GATC 4 cut(s) 208, 354, 693, 813
BstMCI CGRYCG 4 cut(s) 82, 211, 350, 375
BstMWI GCNNNNNNNGC 5 cut(s) 298, 307, 328, 469, 793
BstNI CCWGG 3 cut(s) 916, 995, 1061
BstSCI CCNGG 7 cut(s) 182, 279, 331, 369, 914, 993, 1059
BstSFI CTRYAG 3 cut(s) 700, 909, 1116
BstSLI GKGCMC 1 cut(s) 370
BstUI CGCG 3 cut(s) 58, 213, 289
BstV1I GCAGC 4 cut(s) 288, 288, 923, 1016
BstZI CGGCCG 2 cut(s) 347, 372
BsuI GTATCC 1 cut(s) 1067
BsuRI GGCC 5 cut(s) 292, 331, 349, 374, 760
BtgI CCRYGG 4 cut(s) 350, 375, 396, 945
BtsCI GGATG 1 cut(s) 1129
BtsI GCAGTG 1 cut(s) 618
BtsIMutI CAGTG 1 cut(s) 618
BtuMI TCGCGA 1 cut(s) 213
CfoI GCGC 2 cut(s) 60, 289
Cfr10I RCCGGY 1 cut(s) 345
Cfr13I GGNCC 6 cut(s) 291, 329, 343, 379, 393, 979
Csp6I GTAC 5 cut(s) 187, 259, 316, 941, 1231
CviAII CATG 5 cut(s) 602, 649, 707, 791, 946
CviQI GTAC 5 cut(s) 187, 259, 316, 941, 1231
DdeI CTNAG 5 cut(s) 476, 486, 836, 972, 1227
DpnI GATC 4 cut(s) 210, 356, 695, 815
DpnII GATC 4 cut(s) 208, 354, 693, 813
DrdI GACNNNNNNGTC 1 cut(s) 711
DseDI GACNNNNNNGTC 1 cut(s) 711
EaeI YGGCCR 2 cut(s) 347, 372
EagI CGGCCG 2 cut(s) 347, 372
Eam1104I CTCTTC 3 cut(s) 749, 860, 1001
EarI CTCTTC 3 cut(s) 749, 860, 1001
EciI GGCGGA 2 cut(s) 183, 422
Ecl136II GAGCTC 1 cut(s) 1045
EclXI CGGCCG 2 cut(s) 347, 372
Eco130I CCWWGG 1 cut(s) 945
Eco147I AGGCCT 1 cut(s) 760
Eco24I GRGCYC 2 cut(s) 312, 1047
Eco47I GGWCC 4 cut(s) 343, 379, 393, 979
Eco52I CGGCCG 2 cut(s) 347, 372
Eco53kI GAGCTC 1 cut(s) 1045
Eco57I CTGAAG 1 cut(s) 443
Eco88I CYCGRG 1 cut(s) 671
EcoICRI GAGCTC 1 cut(s) 1045
EcoRII CCWGG 3 cut(s) 914, 993, 1059
EcoT14I CCWWGG 1 cut(s) 945
EcoT38I GRGCYC 2 cut(s) 312, 1047
ErhI CCWWGG 1 cut(s) 945
Esp3I CGTCTC 1 cut(s) 207
FaeI CATG 5 cut(s) 605, 652, 710, 794, 949
FaqI GGGAC 1 cut(s) 866
FatI CATG 5 cut(s) 601, 648, 706, 790, 945
FauI CCCGC 2 cut(s) 29, 297
FbaI TGATCA 1 cut(s) 813
FblI GTMKAC 1 cut(s) 703
Fnu4HI GCNGC 6 cut(s) 277, 290, 302, 473, 912, 1030
FokI GGATG 1 cut(s) 1136
FriOI GRGCYC 2 cut(s) 312, 1047
Fsp4HI GCNGC 6 cut(s) 277, 290, 302, 473, 912, 1030
GlaI GCGC 2 cut(s) 59, 288
GluI GCNGC 6 cut(s) 277, 290, 302, 473, 912, 1030
GsaI CCCAGC 1 cut(s) 670
HaeIII GGCC 5 cut(s) 292, 331, 349, 374, 760
HapII CCGG 6 cut(s) 184, 281, 332, 346, 371, 982
HhaI GCGC 2 cut(s) 60, 289
Hin1II CATG 5 cut(s) 605, 652, 710, 794, 949
Hin6I GCGC 2 cut(s) 58, 287
HinP1I GCGC 2 cut(s) 58, 287
HincII GTYRAC 1 cut(s) 646
HindII GTYRAC 1 cut(s) 646
HinfI GANTC 2 cut(s) 562, 766
HpaII CCGG 6 cut(s) 184, 281, 332, 346, 371, 982
HphI GGTGA 3 cut(s) 400, 1075, 1253
Hpy166II GTNNAC 3 cut(s) 379, 646, 704
Hpy188I TCNGA 6 cut(s) 238, 516, 639, 731, 973, 1207
Hpy188III TCNNGA 9 cut(s) 166, 206, 212, 221, 982, 1001, 1040, 1139, 1163
Hpy8I GTNNAC 3 cut(s) 379, 646, 704
Hpy99I CGWCG 1 cut(s) 202
HpyAV CCTTC 4 cut(s) 100, 379, 1090, 1145
HpyCH4III ACNGT 3 cut(s) 191, 643, 1152
HpyCH4V TGCA 5 cut(s) 463, 663, 911, 1032, 1187
HpyF10VI GCNNNNNNNGC 5 cut(s) 298, 307, 328, 469, 793
HpyF3I CTNAG 5 cut(s) 476, 486, 836, 972, 1227
Hsp92II CATG 5 cut(s) 605, 652, 710, 794, 949
HspAI GCGC 2 cut(s) 58, 287
Kpn2I TCCGGA 1 cut(s) 981
KpnI GGTACC 2 cut(s) 190, 944
Ksp22I TGATCA 1 cut(s) 813
Kzo9I GATC 4 cut(s) 208, 354, 693, 813
LmnI GCTCC 4 cut(s) 223, 307, 418, 1042
Lsp1109I GCAGC 4 cut(s) 288, 288, 923, 1016
LweI GCATC 3 cut(s) 849, 946, 1114
MaeIII GTNAC 3 cut(s) 923, 1063, 1241
MalI GATC 4 cut(s) 210, 356, 695, 815
MbiI CCGCTC 2 cut(s) 475, 1192
MboI GATC 4 cut(s) 208, 354, 693, 813
MboII GAAGA 5 cut(s) 181, 617, 766, 877, 1018
MhlI GDGCHC 3 cut(s) 312, 370, 1047
MluCI AATT 4 cut(s) 160, 495, 541, 809
MlyI GAGTC 1 cut(s) 556
MmeI TCCRAC 3 cut(s) 321, 408, 662
MroI TCCGGA 1 cut(s) 981
MseI TTAA 2 cut(s) 773, 890
MspI CCGG 6 cut(s) 184, 281, 332, 346, 371, 982
MspR9I CCNGG 7 cut(s) 184, 281, 333, 371, 916, 995, 1061
MvaI CCWGG 3 cut(s) 916, 995, 1061
MvnI CGCG 3 cut(s) 58, 213, 289
MwoI GCNNNNNNNGC 5 cut(s) 298, 307, 328, 469, 793
NciI CCSGG 4 cut(s) 184, 281, 333, 371
NcoI CCATGG 1 cut(s) 945
NdeII GATC 4 cut(s) 208, 354, 693, 813
NlaIII CATG 5 cut(s) 605, 652, 710, 794, 949
NlaIV GGNNCC 5 cut(s) 188, 225, 309, 381, 942
NmuCI GTSAC 2 cut(s) 1063, 1241
NruI TCGCGA 1 cut(s) 213
PaeR7I CTCGAG 1 cut(s) 671
PceI AGGCCT 1 cut(s) 760
PfeI GAWTC 1 cut(s) 766
PkrI GCNGC 6 cut(s) 278, 291, 303, 474, 913, 1031
Ple19I CGATCG 1 cut(s) 211
PleI GAGTC 1 cut(s) 556
PpsI GAGTC 1 cut(s) 556
PshBI ATTAAT 1 cut(s) 773
Psp124BI GAGCTC 1 cut(s) 1047
Psp6I CCWGG 3 cut(s) 914, 993, 1059
PspFI CCCAGC 1 cut(s) 666
PspGI CCWGG 3 cut(s) 914, 993, 1059
PspN4I GGNNCC 5 cut(s) 188, 225, 309, 381, 942
PspPI GGNCC 6 cut(s) 291, 329, 343, 379, 393, 979
PspXI VCTCGAGB 1 cut(s) 671
PstI CTGCAG 1 cut(s) 913
PvuI CGATCG 1 cut(s) 211
RruI TCGCGA 1 cut(s) 213
RsaI GTAC 5 cut(s) 188, 260, 317, 942, 1232
RsaNI GTAC 5 cut(s) 187, 259, 316, 941, 1231
SacI GAGCTC 1 cut(s) 1047
SaqAI TTAA 2 cut(s) 773, 890
SatI GCNGC 6 cut(s) 277, 290, 302, 473, 912, 1030
Sau3AI GATC 4 cut(s) 208, 354, 693, 813
Sau96I GGNCC 6 cut(s) 291, 329, 343, 379, 393, 979
ScaI AGTACT 2 cut(s) 317, 1232
SchI GAGTC 1 cut(s) 556
ScrFI CCNGG 7 cut(s) 184, 281, 333, 371, 916, 995, 1061
SduI GDGCHC 3 cut(s) 312, 370, 1047
SfaNI GCATC 3 cut(s) 849, 946, 1114
SfcI CTRYAG 3 cut(s) 700, 909, 1116
Sfr274I CTCGAG 1 cut(s) 671
SinI GGWCC 4 cut(s) 343, 379, 393, 979
SlaI CTCGAG 1 cut(s) 671
SmlI CTYRAG 2 cut(s) 671, 1001
SmoI CTYRAG 2 cut(s) 671, 1001
Sse9I AATT 4 cut(s) 160, 495, 541, 809
SseBI AGGCCT 1 cut(s) 760
SstI GAGCTC 1 cut(s) 1047
StuI AGGCCT 1 cut(s) 760
StyD4I CCNGG 7 cut(s) 182, 279, 331, 369, 914, 993, 1059
StyI CCWWGG 1 cut(s) 945
TaaI ACNGT 3 cut(s) 191, 643, 1152
TaqI TCGA 4 cut(s) 207, 249, 672, 843
TasI AATT 4 cut(s) 160, 495, 541, 809
TatI WGTACW 2 cut(s) 315, 1230
TauI GCSGC 2 cut(s) 292, 475
TfiI GAWTC 1 cut(s) 766
Tru1I TTAA 2 cut(s) 773, 890
Tru9I TTAA 2 cut(s) 773, 890
TscAI CASTG 1 cut(s) 618
TseFI GTSAC 2 cut(s) 1063, 1241
TseI GCWGC 4 cut(s) 276, 301, 911, 1029
Tsp45I GTSAC 2 cut(s) 1063, 1241
TspDTI ATGAA 2 cut(s) 575, 618
TspGWI ACGGA 1 cut(s) 385
TspRI CASTG 1 cut(s) 618
VpaK11BI GGWCC 4 cut(s) 343, 379, 393, 979
VspI ATTAAT 1 cut(s) 773
XapI RAATTY 1 cut(s) 495
XcmI CCANNNNNNNNNTGG 1 cut(s) 777
XhoI CTCGAG 1 cut(s) 671
XmiI GTMKAC 1 cut(s) 703
ZrmI AGTACT 2 cut(s) 317, 1232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.