Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0012010

Physical Location & Seq

Genomic Coordinates Reverse (-)

47039174 .. 47043047

Gene Structure 3874 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG219700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGTTCCTCACCAAGCTCTCCCGCCAAAACCCAAACCCACTCGCCCTCATTTCCACGCGCCACCTCTCCACCCTCCACGACCGCTACTCCTTCAAACCCCCACCCTCCCTTTCCCCGAACCCCCAAGACCACCCCAACCCTAACCCTAATTTCAAGAAGAAGCAGAAGCCCCGGTACCGTCCGCCGTCGTCTCTCGATCGCGAGGGTCAGGAGCCGATACATTCCGATTTGCCGTTCGATTTCAGGTACAGCTACACCGAGAGCAGCCCGGAAGCGCGGCCCATTGGGCTGCGGGAGCCCAAGTACTCGCCTTTTGGGCCGGGACGGTTGGACCGGCCGTGGATCGGGGTCTGTGCCCCGGCCGTGGACCCGAAAGTGAGGTCCGTGGAGGGAACGGAGGAGGAGGACCTGAAGTTGGAGGAGGAGAGGAGGAGGAGGAGAGAAGCGGTGCAGGGAGAGCCGCTCAGTTCGGCTGAGAGGAAAATTTTGGTGGAGAGATGTCAGAGAGGGAAAACCAAGAAGCAAATCAATTTGGGGAGGGATGGGTTGACTCACAATATGCTGAATGATATTCATAACCATTGGAAACATGAAGAAGCAGTGAGGATAAAATGTCAAGGTGTTCCGACTGTTGACATGAGAAATGTTTGCACCCAGCTCGAGGACAAAACCTTTGGAAAGATCATCTGTAGGCATGGTAGTCTAATCATATTGTTCAGAGGCAGGAACTATAATCCCAAGAAGAGGCCTGTGATTCCATTAATGTTGTGGAAGCCACATGAGCCAAAATATCCCAAACTGATCAAAACTACGATTGATGGGCTAAGCATTGAGGAAACAAAGGAAATGAGGAAGAGAGGATTAGTTGTCCCTGCTTTAACAAAACTTGCCAGGAATGGTTACTATGGTAATCTGGTACCGATGGTTAGAGATGCGTTTCTCTCCTCTGAGCTGGTGCGGATAGACTGCCAGGGTCTTGAGAAGAGTGATTACAAGAAAATAGGCTGCAAACTTCGGGTAACTATCCAAGCCTTCTTCCTCTCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000373 GO:0000375 GO:0000377 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0008535 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010257 GO:0010467 GO:0016043 GO:0016070 GO:0017004 GO:0022414 GO:0022607 GO:0032501 GO:0032502 GO:0032981 GO:0033108 GO:0033617 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0065003 GO:0071704 GO:0071840 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRS1_YhbY

Protein Analysis

349

Amino Acids

40.21

Weight (kDa)

9.77

Isoelectric Point (pI)

48.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRS1_YhbY	PF01985	155 - 240	2.8e-18	CRS1 / YhbY (CRM) domain
CRS1_YhbY	PF01985	275 - 342	1.6e-06	CRS1 / YhbY (CRM) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31010 AT4G31010
fragaria_vesca	FvH4_7g12730
malus_domestica	MD02G1197200.v1.1 MD07G1124100.v1.1
prunus_persica	Prupe.2G151400_v2.0.a1 Prupe.2G151400_v2.0.a1 Prupe.2G151400_v2.0.a1
pyrus_communis	pycom02g16050
rosa_chinensis	RchiOBHm_Chr1g0351741
rosa_laevigata	RLG00000028386
rosa_multiflora	Rmu_sc0001933.1_g000016
rosa_roxburghii	Rroxscaffold_4G00303580
rosa_rugosa	Rorug01G0221100
rosa_samantha	Rh1AG235000 Rh1BG205600 Rh1CG219700 Rh1DG232600
rosa_wichuraiana	Rw1G020460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	174, 916
AccB1I	GGYRCC	2 cut(s)	174, 916
AccBSI	CCGCTC	1 cut(s)	463
AccII	CGCG	3 cut(s)	58, 201, 277
AciI	CCGC	8 cut(s)	22, 82, 182, 277, 292, 446, 461, 958
AclWI	GGATC	1 cut(s)	350
AcoI	YGGCCR	2 cut(s)	335, 360
AcsI	RAATTY	1 cut(s)	483
AcuI	CTGAAG	1 cut(s)	431
AfaI	GTAC	4 cut(s)	176, 248, 305, 918
AfiI	CCNNNNNNNGG	5 cut(s)	344, 364, 415, 661, 744
AgsI	TTSAA	2 cut(s)	94, 154
AjnI	CCWGG	2 cut(s)	890, 969
AluBI	AGCT	4 cut(s)	16, 252, 658, 952
AluI	AGCT	4 cut(s)	16, 252, 658, 952
Alw26I	GTCTC	1 cut(s)	195
AlwI	GGATC	1 cut(s)	350
Ama87I	CYCGRG	1 cut(s)	659
AoxI	GGCC	5 cut(s)	278, 317, 335, 360, 746
ApeKI	GCWGC	3 cut(s)	264, 289, 1005
ApoI	RAATTY	1 cut(s)	483
ArsI	GACNNNNNNTTYG	4 cut(s)	365, 397, 656, 688
AseI	ATTAAT	1 cut(s)	761
Asp718I	GGTACC	2 cut(s)	174, 916
AspLEI	GCGC	2 cut(s)	60, 277
AspS9I	GGNCC	6 cut(s)	279, 317, 331, 367, 381, 406
AsuC2I	CCSGG	4 cut(s)	172, 269, 321, 359
AvaI	CYCGRG	1 cut(s)	659
AvaII	GGWCC	4 cut(s)	331, 367, 381, 406
BaeGI	GKGCMC	1 cut(s)	358
BanI	GGYRCC	2 cut(s)	174, 916
BanII	GRGCYC	1 cut(s)	300
BarI	GAAGNNNNNNTAC	4 cut(s)	158, 190, 974, 1006
BbvI	GCAGC	3 cut(s)	276, 276, 992
BccI	CCATC	3 cut(s)	536, 812, 916
BceAI	ACGGC	4 cut(s)	169, 217, 322, 347
BcgI	CGANNNNNNTGC	2 cut(s)	640, 674
BciT130I	CCWGG	2 cut(s)	892, 971
BclI	TGATCA	1 cut(s)	801
BcnI	CCSGG	4 cut(s)	172, 269, 321, 359
BcoDI	GTCTC	1 cut(s)	195
BfmI	CTRYAG	1 cut(s)	688
BglI	GCCNNNNNGGC	2 cut(s)	286, 316
BisI	GCNGC	5 cut(s)	265, 278, 290, 461, 1006
BlpI	GCTNAGC	1 cut(s)	824
BlsI	GCNGC	5 cut(s)	266, 279, 291, 462, 1007
BmcAI	AGTACT	1 cut(s)	305
Bme1390I	CCNGG	6 cut(s)	172, 269, 321, 359, 892, 971
Bme18I	GGWCC	4 cut(s)	331, 367, 381, 406
BmeT110I	CYCGRG	1 cut(s)	659
BmgT120I	GGNCC	6 cut(s)	279, 317, 331, 367, 381, 406
BmiI	GGNNCC	5 cut(s)	176, 213, 297, 369, 918
BmrFI	CCNGG	6 cut(s)	172, 269, 321, 359, 892, 971
BmsI	GCATC	1 cut(s)	922
BplI	GAGNNNNNCTC	2 cut(s)	447, 479
Bpu1102I	GCTNAGC	1 cut(s)	824
BpuEI	CTTGAG	1 cut(s)	998
BpuMI	CCSGG	4 cut(s)	172, 269, 321, 359
BsaJI	CCNNGG	6 cut(s)	170, 338, 357, 363, 384, 970
BsaXI	ACNNNNNCTCC	4 cut(s)	71, 101, 287, 317
Bsc4I	CCNNNNNNNGG	5 cut(s)	344, 364, 415, 661, 744
Bse118I	RCCGGY	1 cut(s)	333
BseBI	CCWGG	2 cut(s)	892, 971
BseDI	CCNNGG	6 cut(s)	170, 338, 357, 363, 384, 970
BseGI	GGATG	1 cut(s)	547
BseLI	CCNNNNNNNGG	5 cut(s)	344, 364, 415, 661, 744
BseMII	CTCAG	3 cut(s)	465, 478, 939
BseRI	GAGGAG	9 cut(s)	413, 416, 434, 437, 442, 445, 448, 451, 934
BseSI	GKGCMC	1 cut(s)	358
BseX3I	CGGCCG	2 cut(s)	335, 360
BseXI	GCAGC	3 cut(s)	276, 276, 992
BseYI	CCCAGC	1 cut(s)	654
BsgI	GTGCAG	1 cut(s)	470
Bsh1236I	CGCG	3 cut(s)	58, 201, 277
Bsh1285I	CGRYCG	4 cut(s)	82, 199, 338, 363
BshFI	GGCC	5 cut(s)	280, 319, 337, 362, 748
BshNI	GGYRCC	2 cut(s)	174, 916
BsiEI	CGRYCG	4 cut(s)	82, 199, 338, 363
BsiHKCI	CYCGRG	1 cut(s)	659
BsiSI	CCGG	5 cut(s)	172, 269, 320, 334, 359
BslFI	GGGAC	2 cut(s)	336, 854
BslI	CCNNNNNNNGG	5 cut(s)	344, 364, 415, 661, 744
BsmAI	GTCTC	1 cut(s)	195
BsmBI	CGTCTC	1 cut(s)	195
BsmFI	GGGAC	2 cut(s)	336, 854
BsnI	GGCC	5 cut(s)	280, 319, 337, 362, 748
BsoBI	CYCGRG	1 cut(s)	659
Bsp1286I	GDGCHC	2 cut(s)	300, 358
Bsp143I	GATC	4 cut(s)	196, 342, 681, 801
Bsp1720I	GCTNAGC	1 cut(s)	824
Bsp68I	TCGCGA	1 cut(s)	201
BspACI	CCGC	8 cut(s)	22, 82, 182, 277, 292, 446, 461, 958
BspANI	GGCC	5 cut(s)	280, 319, 337, 362, 748
BspCNI	CTCAG	3 cut(s)	466, 477, 940
BspFNI	CGCG	3 cut(s)	58, 201, 277
BspLI	GGNNCC	5 cut(s)	176, 213, 297, 369, 918
BspPI	GGATC	1 cut(s)	350
BspT107I	GGYRCC	2 cut(s)	174, 916
BsrBI	CCGCTC	1 cut(s)	463
BsrFI	RCCGGY	1 cut(s)	333
BssAI	RCCGGY	1 cut(s)	333
BssECI	CCNNGG	6 cut(s)	170, 338, 357, 363, 384, 970
BssMI	GATC	4 cut(s)	196, 342, 681, 801
Bst2UI	CCWGG	2 cut(s)	892, 971
Bst4CI	ACNGT	3 cut(s)	179, 327, 631
Bst6I	CTCTTC	3 cut(s)	737, 848, 977
BstDEI	CTNAG	4 cut(s)	464, 474, 824, 948
BstDSI	CCRYGG	3 cut(s)	338, 363, 384
BstF5I	GGATG	1 cut(s)	547
BstFNI	CGCG	3 cut(s)	58, 201, 277
BstHHI	GCGC	2 cut(s)	60, 277
BstKTI	GATC	4 cut(s)	199, 345, 684, 804
BstMAI	GTCTC	1 cut(s)	195
BstMBI	GATC	4 cut(s)	196, 342, 681, 801
BstMCI	CGRYCG	4 cut(s)	82, 199, 338, 363
BstMWI	GCNNNNNNNGC	5 cut(s)	286, 295, 316, 457, 781
BstNI	CCWGG	2 cut(s)	892, 971
BstSCI	CCNGG	6 cut(s)	170, 267, 319, 357, 890, 969
BstSFI	CTRYAG	1 cut(s)	688
BstSLI	GKGCMC	1 cut(s)	358
BstUI	CGCG	3 cut(s)	58, 201, 277
BstV1I	GCAGC	3 cut(s)	276, 276, 992
BstZI	CGGCCG	2 cut(s)	335, 360
BsuRI	GGCC	5 cut(s)	280, 319, 337, 362, 748
BtgI	CCRYGG	3 cut(s)	338, 363, 384
BtsCI	GGATG	1 cut(s)	547
BtsI	GCAGTG	1 cut(s)	606
BtsIMutI	CAGTG	1 cut(s)	606
BtuMI	TCGCGA	1 cut(s)	201
CfoI	GCGC	2 cut(s)	60, 277
Cfr10I	RCCGGY	1 cut(s)	333
Cfr13I	GGNCC	6 cut(s)	279, 317, 331, 367, 381, 406
Csp6I	GTAC	4 cut(s)	175, 247, 304, 917
CviAII	CATG	4 cut(s)	590, 637, 695, 779
CviQI	GTAC	4 cut(s)	175, 247, 304, 917
DdeI	CTNAG	4 cut(s)	464, 474, 824, 948
DpnI	GATC	4 cut(s)	198, 344, 683, 803
DpnII	GATC	4 cut(s)	196, 342, 681, 801
EaeI	YGGCCR	2 cut(s)	335, 360
EagI	CGGCCG	2 cut(s)	335, 360
Eam1104I	CTCTTC	3 cut(s)	737, 848, 977
EarI	CTCTTC	3 cut(s)	737, 848, 977
EciI	GGCGGA	1 cut(s)	171
EclXI	CGGCCG	2 cut(s)	335, 360
Eco147I	AGGCCT	1 cut(s)	748
Eco24I	GRGCYC	1 cut(s)	300
Eco47I	GGWCC	4 cut(s)	331, 367, 381, 406
Eco52I	CGGCCG	2 cut(s)	335, 360
Eco57I	CTGAAG	1 cut(s)	431
Eco88I	CYCGRG	1 cut(s)	659
EcoO109I	RGGNCCY	1 cut(s)	406
EcoRII	CCWGG	2 cut(s)	890, 969
EcoT38I	GRGCYC	1 cut(s)	300
Esp3I	CGTCTC	1 cut(s)	195
FaeI	CATG	4 cut(s)	593, 640, 698, 782
FaiI	YATR	9 cut(s)	560, 576, 591, 638, 696, 710, 732, 780, 906
FaqI	GGGAC	2 cut(s)	336, 854
FatI	CATG	4 cut(s)	589, 636, 694, 778
FauI	CCCGC	2 cut(s)	29, 285
FbaI	TGATCA	1 cut(s)	801
Fnu4HI	GCNGC	5 cut(s)	265, 278, 290, 461, 1006
FokI	GGATG	1 cut(s)	554
FriOI	GRGCYC	1 cut(s)	300
Fsp4HI	GCNGC	5 cut(s)	265, 278, 290, 461, 1006
GlaI	GCGC	2 cut(s)	59, 276
GluI	GCNGC	5 cut(s)	265, 278, 290, 461, 1006
GsaI	CCCAGC	1 cut(s)	658
HaeIII	GGCC	5 cut(s)	280, 319, 337, 362, 748
HapII	CCGG	5 cut(s)	172, 269, 320, 334, 359
HhaI	GCGC	2 cut(s)	60, 277
Hin1II	CATG	4 cut(s)	593, 640, 698, 782
Hin6I	GCGC	2 cut(s)	58, 275
HinP1I	GCGC	2 cut(s)	58, 275
HincII	GTYRAC	2 cut(s)	549, 634
HindII	GTYRAC	2 cut(s)	549, 634
HinfI	GANTC	2 cut(s)	550, 754
HpaII	CCGG	5 cut(s)	172, 269, 320, 334, 359
Hpy166II	GTNNAC	3 cut(s)	367, 549, 634
Hpy188I	TCNGA	5 cut(s)	226, 504, 627, 719, 949
Hpy188III	TCNNGA	5 cut(s)	154, 194, 200, 209, 977
Hpy8I	GTNNAC	3 cut(s)	367, 549, 634
Hpy99I	CGWCG	1 cut(s)	190
HpyAV	CCTTC	2 cut(s)	100, 1042
HpyCH4III	ACNGT	3 cut(s)	179, 327, 631
HpyCH4V	TGCA	3 cut(s)	451, 651, 1008
HpyF10VI	GCNNNNNNNGC	5 cut(s)	286, 295, 316, 457, 781
HpyF3I	CTNAG	4 cut(s)	464, 474, 824, 948
Hsp92II	CATG	4 cut(s)	593, 640, 698, 782
HspAI	GCGC	2 cut(s)	58, 275
KpnI	GGTACC	2 cut(s)	178, 920
Ksp22I	TGATCA	1 cut(s)	801
Kzo9I	GATC	4 cut(s)	196, 342, 681, 801
LmnI	GCTCC	2 cut(s)	211, 295
Lsp1109I	GCAGC	3 cut(s)	276, 276, 992
LweI	GCATC	1 cut(s)	922
MaeIII	GTNAC	2 cut(s)	899, 1018
MalI	GATC	4 cut(s)	198, 344, 683, 803
MbiI	CCGCTC	1 cut(s)	463
MboI	GATC	4 cut(s)	196, 342, 681, 801
MboII	GAAGA	6 cut(s)	169, 605, 754, 865, 994, 1027
MhlI	GDGCHC	2 cut(s)	300, 358
MluCI	AATT	3 cut(s)	148, 483, 529
MlyI	GAGTC	1 cut(s)	544
MmeI	TCCRAC	3 cut(s)	309, 396, 650
MseI	TTAA	3 cut(s)	761, 878, 1048
MspI	CCGG	5 cut(s)	172, 269, 320, 334, 359
MspR9I	CCNGG	6 cut(s)	172, 269, 321, 359, 892, 971
MvaI	CCWGG	2 cut(s)	892, 971
MvnI	CGCG	3 cut(s)	58, 201, 277
MwoI	GCNNNNNNNGC	5 cut(s)	286, 295, 316, 457, 781
NciI	CCSGG	4 cut(s)	172, 269, 321, 359
NdeII	GATC	4 cut(s)	196, 342, 681, 801
NlaIII	CATG	4 cut(s)	593, 640, 698, 782
NlaIV	GGNNCC	5 cut(s)	176, 213, 297, 369, 918
NruI	TCGCGA	1 cut(s)	201
PaeR7I	CTCGAG	1 cut(s)	659
PceI	AGGCCT	1 cut(s)	748
PfeI	GAWTC	1 cut(s)	754
PkrI	GCNGC	5 cut(s)	266, 279, 291, 462, 1007
Ple19I	CGATCG	1 cut(s)	199
PleI	GAGTC	1 cut(s)	544
PpsI	GAGTC	1 cut(s)	544
PpuMI	RGGWCCY	1 cut(s)	406
PshBI	ATTAAT	1 cut(s)	761
Psp5II	RGGWCCY	1 cut(s)	406
Psp6I	CCWGG	2 cut(s)	890, 969
PspFI	CCCAGC	1 cut(s)	654
PspGI	CCWGG	2 cut(s)	890, 969
PspN4I	GGNNCC	5 cut(s)	176, 213, 297, 369, 918
PspPI	GGNCC	6 cut(s)	279, 317, 331, 367, 381, 406
PspPPI	RGGWCCY	1 cut(s)	406
PspXI	VCTCGAGB	1 cut(s)	659
PvuI	CGATCG	1 cut(s)	199
RruI	TCGCGA	1 cut(s)	201
RsaI	GTAC	4 cut(s)	176, 248, 305, 918
RsaNI	GTAC	4 cut(s)	175, 247, 304, 917
SaqAI	TTAA	3 cut(s)	761, 878, 1048
SatI	GCNGC	5 cut(s)	265, 278, 290, 461, 1006
Sau3AI	GATC	4 cut(s)	196, 342, 681, 801
Sau96I	GGNCC	6 cut(s)	279, 317, 331, 367, 381, 406
ScaI	AGTACT	1 cut(s)	305
SchI	GAGTC	1 cut(s)	544
ScrFI	CCNGG	6 cut(s)	172, 269, 321, 359, 892, 971
SduI	GDGCHC	2 cut(s)	300, 358
SfaNI	GCATC	1 cut(s)	922
SfcI	CTRYAG	1 cut(s)	688
Sfr274I	CTCGAG	1 cut(s)	659
SinI	GGWCC	4 cut(s)	331, 367, 381, 406
SlaI	CTCGAG	1 cut(s)	659
SmlI	CTYRAG	2 cut(s)	659, 977
SmoI	CTYRAG	2 cut(s)	659, 977
Sse9I	AATT	3 cut(s)	148, 483, 529
SseBI	AGGCCT	1 cut(s)	748
SsiI	CCGC	8 cut(s)	22, 82, 182, 277, 292, 446, 461, 958
StuI	AGGCCT	1 cut(s)	748
StyD4I	CCNGG	6 cut(s)	170, 267, 319, 357, 890, 969
TaaI	ACNGT	3 cut(s)	179, 327, 631
TaqI	TCGA	3 cut(s)	195, 237, 660
TasI	AATT	3 cut(s)	148, 483, 529
TatI	WGTACW	1 cut(s)	303
TauI	GCSGC	2 cut(s)	280, 463
TfiI	GAWTC	1 cut(s)	754
Tru1I	TTAA	3 cut(s)	761, 878, 1048
Tru9I	TTAA	3 cut(s)	761, 878, 1048
TscAI	CASTG	1 cut(s)	606
TseI	GCWGC	3 cut(s)	264, 289, 1005
TspDTI	ATGAA	2 cut(s)	563, 606
TspGWI	ACGGA	2 cut(s)	373, 410
TspRI	CASTG	1 cut(s)	606
VpaK11BI	GGWCC	4 cut(s)	331, 367, 381, 406
VspI	ATTAAT	1 cut(s)	761
XapI	RAATTY	1 cut(s)	483
XcmI	CCANNNNNNNNNTGG	1 cut(s)	765
XhoI	CTCGAG	1 cut(s)	659
ZrmI	AGTACT	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.