Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0012010

Physical Location & Seq

Genomic Coordinates Reverse (-)

44581636 .. 44584890

Gene Structure 3255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG232600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGTTCCTCACCAAGCTCTCCCGCCAAAACCCAAACCCACTCTCCCTCATTTCCACGCGCCACCTCTCCACCCTCCACGACCGCTACTCCTTCAAACCCCCACCCTGCCTTTCCCCGAACCCCCAAGACCACCCCAACCCCAACCCTAACCCTAATTTCAAGAAGAAGCAGAAGCCCCGGTACCGTCCGCCGTCGTCTCTCGATCGCGAGGGTCAGGAGCCGATACATTCCGATTTGCCGTTCGATTTCAGGTACAGCTACACCGAGAGCAGCCCGGAAGCGCGGCCCATTGGGCTGCGGGAGCCCAAGTACTCGCCTTTTGGGCCGGGGCGGTTGGACCGGCCGTGGATCGGGGTCTGTGCCCCCGCCGTGGACCCGAAGGTGAGGTCTGTGGAGGGAACGGAGGAGGAGGAGCTGAAGTTGGAGGAGGAGAGGAGGAGGAGAAGAGAAGCGGTGCAGGGAGAGCCGCTCAGTTCAGCTGAGAGGAAAATTTTGGTGGAGAAATGTCAGAGAGGGAAAACCAAGAAGCAAATCAATTTGGGGAGGGATGGGTTGACTCACAATATGCTGAATGATATTCATAACCATTGGAAACATGAAGAAGCAGTGAGGATAAAATGTCAAGGTGTTCCGACTGTTGACATGAGAAATGTTTGCACCCAGCTTGAGGACAAAACCTTTGGAAAGATCATCTGTAGACATGGTAGTCTAATCATATTGTTTAGAGGCAGGAACTATAATCCCAAGAAGAGGCCTGTGATTCCATTAATGTTGTGGAAGCCACATGAGCCAAAATATCCCAAACTGATCAAAACTACGATTGATGGGCTAAGCATCGAGGAAACAAAGGAAATGAGGAAGAGAGGATTAGTTGTCCCTGCTTTAACAAAACTTGCCAGGAATGGTTACTATGGTAATCTGGTACCCATGGTTAGAGATGCGTTTCTCTCCTCTGAGCTGGTCCGGATAGACTGCCAGGGTCTTGAGAAGAGTGATTACAAGAAAATAGGCTGCAAACTTCGGGTAACTATCCAAGCCTTCTTCCTCTCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000373 GO:0000375 GO:0000377 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0008535 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010257 GO:0010467 GO:0016043 GO:0016070 GO:0017004 GO:0022414 GO:0022607 GO:0032501 GO:0032502 GO:0032981 GO:0033108 GO:0033617 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0065003 GO:0071704 GO:0071840 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRS1_YhbY

Protein Analysis

351

Amino Acids

40.44

Weight (kDa)

9.72

Isoelectric Point (pI)

48.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRS1_YhbY	PF01985	157 - 242	2.9e-18	CRS1 / YhbY (CRM) domain
CRS1_YhbY	PF01985	277 - 344	1.6e-06	CRS1 / YhbY (CRM) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31010 AT4G31010
fragaria_vesca	FvH4_7g12730
malus_domestica	MD02G1197200.v1.1 MD07G1124100.v1.1
prunus_persica	Prupe.2G151400_v2.0.a1 Prupe.2G151400_v2.0.a1 Prupe.2G151400_v2.0.a1
pyrus_communis	pycom02g16050
rosa_chinensis	RchiOBHm_Chr1g0351741
rosa_laevigata	RLG00000028386
rosa_multiflora	Rmu_sc0001933.1_g000016
rosa_roxburghii	Rroxscaffold_4G00303580
rosa_rugosa	Rorug01G0221100
rosa_samantha	Rh1AG235000 Rh1BG205600 Rh1CG219700 Rh1DG232600
rosa_wichuraiana	Rw1G020460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	705
Acc65I	GGTACC	2 cut(s)	180, 922
AccB1I	GGYRCC	2 cut(s)	180, 922
AccBSI	CCGCTC	1 cut(s)	469
AccI	GTMKAC	1 cut(s)	697
AccII	CGCG	3 cut(s)	58, 207, 283
AccIII	TCCGGA	1 cut(s)	963
AciI	CCGC	9 cut(s)	22, 82, 188, 283, 298, 331, 366, 452, 467
AclWI	GGATC	1 cut(s)	356
AcoI	YGGCCR	1 cut(s)	341
AcsI	RAATTY	1 cut(s)	489
AcuI	CTGAAG	1 cut(s)	437
AfaI	GTAC	4 cut(s)	182, 254, 311, 924
AfiI	CCNNNNNNNGG	4 cut(s)	350, 370, 667, 750
AgsI	TTSAA	2 cut(s)	94, 160
AjnI	CCWGG	2 cut(s)	896, 975
AluBI	AGCT	6 cut(s)	16, 258, 415, 479, 664, 958
AluI	AGCT	6 cut(s)	16, 258, 415, 479, 664, 958
Alw26I	GTCTC	1 cut(s)	201
AlwI	GGATC	1 cut(s)	356
Aor13HI	TCCGGA	1 cut(s)	963
AoxI	GGCC	4 cut(s)	284, 323, 341, 752
ApeKI	GCWGC	3 cut(s)	270, 295, 1011
ApoI	RAATTY	1 cut(s)	489
ArsI	GACNNNNNNTTYG	4 cut(s)	371, 403, 662, 694
AseI	ATTAAT	1 cut(s)	767
Asp718I	GGTACC	2 cut(s)	180, 922
AspLEI	GCGC	2 cut(s)	60, 283
AspS9I	GGNCC	5 cut(s)	285, 323, 337, 373, 961
AsuC2I	CCSGG	3 cut(s)	178, 275, 327
AsuHPI	GGTGA	1 cut(s)	394
AvaII	GGWCC	3 cut(s)	337, 373, 961
BaeGI	GKGCMC	1 cut(s)	364
BanI	GGYRCC	2 cut(s)	180, 922
BanII	GRGCYC	1 cut(s)	306
BarI	GAAGNNNNNNTAC	4 cut(s)	164, 196, 980, 1012
BbvI	GCAGC	3 cut(s)	282, 282, 998
BccI	CCATC	2 cut(s)	542, 818
BceAI	ACGGC	4 cut(s)	175, 223, 328, 353
BciT130I	CCWGG	2 cut(s)	898, 977
BclI	TGATCA	1 cut(s)	807
BcnI	CCSGG	3 cut(s)	178, 275, 327
BcoDI	GTCTC	1 cut(s)	201
BfmI	CTRYAG	1 cut(s)	694
BglI	GCCNNNNNGGC	2 cut(s)	292, 322
BisI	GCNGC	5 cut(s)	271, 284, 296, 467, 1012
BlpI	GCTNAGC	1 cut(s)	830
BlsI	GCNGC	5 cut(s)	272, 285, 297, 468, 1013
BmcAI	AGTACT	1 cut(s)	311
Bme1390I	CCNGG	5 cut(s)	178, 275, 327, 898, 977
Bme18I	GGWCC	3 cut(s)	337, 373, 961
BmgT120I	GGNCC	5 cut(s)	285, 323, 337, 373, 961
BmiI	GGNNCC	5 cut(s)	182, 219, 303, 375, 924
BmrFI	CCNGG	5 cut(s)	178, 275, 327, 898, 977
BmsI	GCATC	2 cut(s)	843, 928
BplI	GAGNNNNNCTC	2 cut(s)	453, 485
Bpu1102I	GCTNAGC	1 cut(s)	830
BpuEI	CTTGAG	2 cut(s)	686, 1004
BpuMI	CCSGG	3 cut(s)	178, 275, 327
BsaJI	CCNNGG	6 cut(s)	176, 326, 344, 369, 927, 976
BsaWI	WCCGGW	1 cut(s)	963
BsaXI	ACNNNNNCTCC	8 cut(s)	26, 56, 71, 101, 293, 323, 404, 434
Bsc4I	CCNNNNNNNGG	4 cut(s)	350, 370, 667, 750
Bse118I	RCCGGY	1 cut(s)	339
BseAI	TCCGGA	1 cut(s)	963
BseBI	CCWGG	2 cut(s)	898, 977
BseDI	CCNNGG	6 cut(s)	176, 326, 344, 369, 927, 976
BseGI	GGATG	1 cut(s)	553
BseLI	CCNNNNNNNGG	4 cut(s)	350, 370, 667, 750
BseMII	CTCAG	3 cut(s)	471, 484, 945
BseRI	GAGGAG	9 cut(s)	419, 422, 425, 440, 443, 448, 451, 454, 940
BseSI	GKGCMC	1 cut(s)	364
BseX3I	CGGCCG	1 cut(s)	341
BseXI	GCAGC	3 cut(s)	282, 282, 998
BseYI	CCCAGC	1 cut(s)	660
BsgI	GTGCAG	1 cut(s)	476
Bsh1236I	CGCG	3 cut(s)	58, 207, 283
Bsh1285I	CGRYCG	3 cut(s)	82, 205, 344
BshFI	GGCC	4 cut(s)	286, 325, 343, 754
BshNI	GGYRCC	2 cut(s)	180, 922
BsiEI	CGRYCG	3 cut(s)	82, 205, 344
BsiSI	CCGG	5 cut(s)	178, 275, 326, 340, 964
BslFI	GGGAC	1 cut(s)	860
BslI	CCNNNNNNNGG	4 cut(s)	350, 370, 667, 750
BsmAI	GTCTC	1 cut(s)	201
BsmBI	CGTCTC	1 cut(s)	201
BsmFI	GGGAC	1 cut(s)	860
BsnI	GGCC	4 cut(s)	286, 325, 343, 754
Bsp1286I	GDGCHC	2 cut(s)	306, 364
Bsp13I	TCCGGA	1 cut(s)	963
Bsp143I	GATC	4 cut(s)	202, 348, 687, 807
Bsp1720I	GCTNAGC	1 cut(s)	830
Bsp19I	CCATGG	1 cut(s)	927
Bsp68I	TCGCGA	1 cut(s)	207
BspACI	CCGC	9 cut(s)	22, 82, 188, 283, 298, 331, 366, 452, 467
BspANI	GGCC	4 cut(s)	286, 325, 343, 754
BspCNI	CTCAG	3 cut(s)	472, 483, 946
BspEI	TCCGGA	1 cut(s)	963
BspFNI	CGCG	3 cut(s)	58, 207, 283
BspLI	GGNNCC	5 cut(s)	182, 219, 303, 375, 924
BspPI	GGATC	1 cut(s)	356
BspT107I	GGYRCC	2 cut(s)	180, 922
BsrBI	CCGCTC	1 cut(s)	469
BsrFI	RCCGGY	1 cut(s)	339
BssAI	RCCGGY	1 cut(s)	339
BssECI	CCNNGG	6 cut(s)	176, 326, 344, 369, 927, 976
BssMI	GATC	4 cut(s)	202, 348, 687, 807
BssT1I	CCWWGG	1 cut(s)	927
Bst2UI	CCWGG	2 cut(s)	898, 977
Bst4CI	ACNGT	2 cut(s)	185, 637
Bst6I	CTCTTC	4 cut(s)	439, 743, 854, 983
BstDEI	CTNAG	4 cut(s)	470, 480, 830, 954
BstDSI	CCRYGG	3 cut(s)	344, 369, 927
BstF5I	GGATG	1 cut(s)	553
BstFNI	CGCG	3 cut(s)	58, 207, 283
BstHHI	GCGC	2 cut(s)	60, 283
BstKTI	GATC	4 cut(s)	205, 351, 690, 810
BstMAI	GTCTC	1 cut(s)	201
BstMBI	GATC	4 cut(s)	202, 348, 687, 807
BstMCI	CGRYCG	3 cut(s)	82, 205, 344
BstMWI	GCNNNNNNNGC	5 cut(s)	292, 301, 322, 463, 787
BstNI	CCWGG	2 cut(s)	898, 977
BstSCI	CCNGG	5 cut(s)	176, 273, 325, 896, 975
BstSFI	CTRYAG	1 cut(s)	694
BstSLI	GKGCMC	1 cut(s)	364
BstUI	CGCG	3 cut(s)	58, 207, 283
BstV1I	GCAGC	3 cut(s)	282, 282, 998
BstZI	CGGCCG	1 cut(s)	341
BsuRI	GGCC	4 cut(s)	286, 325, 343, 754
BtgI	CCRYGG	3 cut(s)	344, 369, 927
BtsCI	GGATG	1 cut(s)	553
BtsI	GCAGTG	1 cut(s)	612
BtsIMutI	CAGTG	1 cut(s)	612
BtuMI	TCGCGA	1 cut(s)	207
CfoI	GCGC	2 cut(s)	60, 283
Cfr10I	RCCGGY	1 cut(s)	339
Cfr13I	GGNCC	5 cut(s)	285, 323, 337, 373, 961
Csp6I	GTAC	4 cut(s)	181, 253, 310, 923
CviAII	CATG	5 cut(s)	596, 643, 701, 785, 928
CviQI	GTAC	4 cut(s)	181, 253, 310, 923
DdeI	CTNAG	4 cut(s)	470, 480, 830, 954
DpnI	GATC	4 cut(s)	204, 350, 689, 809
DpnII	GATC	4 cut(s)	202, 348, 687, 807
DrdI	GACNNNNNNGTC	1 cut(s)	705
DseDI	GACNNNNNNGTC	1 cut(s)	705
EaeI	YGGCCR	1 cut(s)	341
EagI	CGGCCG	1 cut(s)	341
Eam1104I	CTCTTC	4 cut(s)	439, 743, 854, 983
EarI	CTCTTC	4 cut(s)	439, 743, 854, 983
EciI	GGCGGA	1 cut(s)	177
EclXI	CGGCCG	1 cut(s)	341
Eco130I	CCWWGG	1 cut(s)	927
Eco147I	AGGCCT	1 cut(s)	754
Eco24I	GRGCYC	1 cut(s)	306
Eco47I	GGWCC	3 cut(s)	337, 373, 961
Eco52I	CGGCCG	1 cut(s)	341
Eco57I	CTGAAG	1 cut(s)	437
EcoRII	CCWGG	2 cut(s)	896, 975
EcoT14I	CCWWGG	1 cut(s)	927
EcoT38I	GRGCYC	1 cut(s)	306
ErhI	CCWWGG	1 cut(s)	927
Esp3I	CGTCTC	1 cut(s)	201
FaeI	CATG	5 cut(s)	599, 646, 704, 788, 931
FaqI	GGGAC	1 cut(s)	860
FatI	CATG	5 cut(s)	595, 642, 700, 784, 927
FauI	CCCGC	3 cut(s)	29, 291, 373
FbaI	TGATCA	1 cut(s)	807
FblI	GTMKAC	1 cut(s)	697
Fnu4HI	GCNGC	5 cut(s)	271, 284, 296, 467, 1012
FokI	GGATG	1 cut(s)	560
FriOI	GRGCYC	1 cut(s)	306
Fsp4HI	GCNGC	5 cut(s)	271, 284, 296, 467, 1012
GlaI	GCGC	2 cut(s)	59, 282
GluI	GCNGC	5 cut(s)	271, 284, 296, 467, 1012
GsaI	CCCAGC	1 cut(s)	664
HaeIII	GGCC	4 cut(s)	286, 325, 343, 754
HapII	CCGG	5 cut(s)	178, 275, 326, 340, 964
HhaI	GCGC	2 cut(s)	60, 283
Hin1II	CATG	5 cut(s)	599, 646, 704, 788, 931
Hin6I	GCGC	2 cut(s)	58, 281
HinP1I	GCGC	2 cut(s)	58, 281
HincII	GTYRAC	2 cut(s)	555, 640
HindII	GTYRAC	2 cut(s)	555, 640
HinfI	GANTC	2 cut(s)	556, 760
HpaII	CCGG	5 cut(s)	178, 275, 326, 340, 964
HphI	GGTGA	1 cut(s)	394
Hpy166II	GTNNAC	4 cut(s)	373, 555, 640, 698
Hpy188I	TCNGA	4 cut(s)	232, 510, 633, 955
Hpy188III	TCNNGA	6 cut(s)	160, 200, 206, 215, 964, 983
Hpy8I	GTNNAC	4 cut(s)	373, 555, 640, 698
Hpy99I	CGWCG	1 cut(s)	196
HpyAV	CCTTC	3 cut(s)	100, 373, 1048
HpyCH4III	ACNGT	2 cut(s)	185, 637
HpyCH4V	TGCA	3 cut(s)	457, 657, 1014
HpyF10VI	GCNNNNNNNGC	5 cut(s)	292, 301, 322, 463, 787
HpyF3I	CTNAG	4 cut(s)	470, 480, 830, 954
Hsp92II	CATG	5 cut(s)	599, 646, 704, 788, 931
HspAI	GCGC	2 cut(s)	58, 281
Kpn2I	TCCGGA	1 cut(s)	963
KpnI	GGTACC	2 cut(s)	184, 926
Ksp22I	TGATCA	1 cut(s)	807
Kzo9I	GATC	4 cut(s)	202, 348, 687, 807
LmnI	GCTCC	3 cut(s)	217, 301, 412
Lsp1109I	GCAGC	3 cut(s)	282, 282, 998
LweI	GCATC	2 cut(s)	843, 928
MaeIII	GTNAC	2 cut(s)	905, 1024
MalI	GATC	4 cut(s)	204, 350, 689, 809
MbiI	CCGCTC	1 cut(s)	469
MboI	GATC	4 cut(s)	202, 348, 687, 807
MboII	GAAGA	7 cut(s)	175, 456, 611, 760, 871, 1000, 1033
MhlI	GDGCHC	2 cut(s)	306, 364
MluCI	AATT	3 cut(s)	154, 489, 535
MlyI	GAGTC	1 cut(s)	550
MmeI	TCCRAC	3 cut(s)	315, 402, 656
MroI	TCCGGA	1 cut(s)	963
MseI	TTAA	3 cut(s)	767, 884, 1054
MspA1I	CMGCKG	1 cut(s)	479
MspI	CCGG	5 cut(s)	178, 275, 326, 340, 964
MspR9I	CCNGG	5 cut(s)	178, 275, 327, 898, 977
MvaI	CCWGG	2 cut(s)	898, 977
MvnI	CGCG	3 cut(s)	58, 207, 283
MwoI	GCNNNNNNNGC	5 cut(s)	292, 301, 322, 463, 787
NciI	CCSGG	3 cut(s)	178, 275, 327
NcoI	CCATGG	1 cut(s)	927
NdeII	GATC	4 cut(s)	202, 348, 687, 807
NlaIII	CATG	5 cut(s)	599, 646, 704, 788, 931
NlaIV	GGNNCC	5 cut(s)	182, 219, 303, 375, 924
NruI	TCGCGA	1 cut(s)	207
PceI	AGGCCT	1 cut(s)	754
PfeI	GAWTC	1 cut(s)	760
PkrI	GCNGC	5 cut(s)	272, 285, 297, 468, 1013
Ple19I	CGATCG	1 cut(s)	205
PleI	GAGTC	1 cut(s)	550
PpsI	GAGTC	1 cut(s)	550
PshBI	ATTAAT	1 cut(s)	767
Psp6I	CCWGG	2 cut(s)	896, 975
PspFI	CCCAGC	1 cut(s)	660
PspGI	CCWGG	2 cut(s)	896, 975
PspN4I	GGNNCC	5 cut(s)	182, 219, 303, 375, 924
PspPI	GGNCC	5 cut(s)	285, 323, 337, 373, 961
PvuI	CGATCG	1 cut(s)	205
PvuII	CAGCTG	1 cut(s)	479
RruI	TCGCGA	1 cut(s)	207
RsaI	GTAC	4 cut(s)	182, 254, 311, 924
RsaNI	GTAC	4 cut(s)	181, 253, 310, 923
SaqAI	TTAA	3 cut(s)	767, 884, 1054
SatI	GCNGC	5 cut(s)	271, 284, 296, 467, 1012
Sau3AI	GATC	4 cut(s)	202, 348, 687, 807
Sau96I	GGNCC	5 cut(s)	285, 323, 337, 373, 961
ScaI	AGTACT	1 cut(s)	311
SchI	GAGTC	1 cut(s)	550
ScrFI	CCNGG	5 cut(s)	178, 275, 327, 898, 977
SduI	GDGCHC	2 cut(s)	306, 364
SfaNI	GCATC	2 cut(s)	843, 928
SfcI	CTRYAG	1 cut(s)	694
SinI	GGWCC	3 cut(s)	337, 373, 961
SmlI	CTYRAG	2 cut(s)	665, 983
SmoI	CTYRAG	2 cut(s)	665, 983
Sse9I	AATT	3 cut(s)	154, 489, 535
SseBI	AGGCCT	1 cut(s)	754
SsiI	CCGC	9 cut(s)	22, 82, 188, 283, 298, 331, 366, 452, 467
StuI	AGGCCT	1 cut(s)	754
StyD4I	CCNGG	5 cut(s)	176, 273, 325, 896, 975
StyI	CCWWGG	1 cut(s)	927
TaaI	ACNGT	2 cut(s)	185, 637
TaqI	TCGA	3 cut(s)	201, 243, 837
TasI	AATT	3 cut(s)	154, 489, 535
TatI	WGTACW	1 cut(s)	309
TauI	GCSGC	2 cut(s)	286, 469
TfiI	GAWTC	1 cut(s)	760
Tru1I	TTAA	3 cut(s)	767, 884, 1054
Tru9I	TTAA	3 cut(s)	767, 884, 1054
TscAI	CASTG	1 cut(s)	612
TseI	GCWGC	3 cut(s)	270, 295, 1011
TspDTI	ATGAA	2 cut(s)	569, 612
TspGWI	ACGGA	1 cut(s)	416
TspRI	CASTG	1 cut(s)	612
VpaK11BI	GGWCC	3 cut(s)	337, 373, 961
VspI	ATTAAT	1 cut(s)	767
XapI	RAATTY	1 cut(s)	489
XcmI	CCANNNNNNNNNTGG	1 cut(s)	771
XmiI	GTMKAC	1 cut(s)	697
ZrmI	AGTACT	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.