Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0012010

Physical Location & Seq

Genomic Coordinates Forward (+)

31674347 .. 31697311

Gene Structure 22965 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0221100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3309 bp

ATGCCTGGTGAAGCCTCCTCTTCCAATTCTCCTCATTGTCGATTTAGCTACGACGTGTTCCTCAGTTTCAGAGGCGAAGACACCCGCAAGACTTTCACCGACCACCTCTACACGGCCCTGGTCAACGCCGGAATCCGCACTTTCCAAGACGACGACGAAATCGAGAGAGGACGCGATATCAAGCCGGAGCTGAACAAAGCCATCCACCAATCACGTTGCTCCGTCGTCGTCTTTTCCAAAGACTACGCCTCTTCCCGATGGTGCCTCGACGAGCTTGTCGTCATCCTCCAACGCCACGCCGACGACGCTCGCGGTCATGTCGTTTTGCCGGTGTTCTACGACATCGATCCGTCTCATGTGAGGAAGCAGACCGGAAGTTTTGCCGCAGCTTTTGCTAGACACCGGAAAACTCAATCGCCGGACAAGGTGAAGGAATGGAGGGAAGCACTTGCACAAGTTGCAGATCTGGCGGGGATGGTCTTGCAGAACCAAGCTGATGGGTACGAATCAAAGTTTATCCAAAAGATTGTTAAAGTGATTGGAGGAAAACTAAGTCGCACACCCTTGAGTGTTGCCCCAAACCTGATTGGCATCCATTCTCGAGTCAAAAACATTAGTTTATGGTTACAAGATGGATCAACTGATGTTGGCACACTTGTAATTTATGGGATGAGTGGAATAGGGAAGACAACCATTGCAAAATTTGTTTACAATTCAAACTTCAGAAGATTTGAAGGAAGTAGTTTCCTTGAAAATATCAAAGAAATCTCAGAACAACCCAATGGCCTAGTTCAAATACAAATGCAACTTCTTTCTAATATCTTAAACGGAAGAAAGGTGATAATACACAGTGTTAGTGAAGGAATCACTAAGATTGCAGATACCATAAACTCTAAAAGAGTTCTTCTTGTTCTTGATGATGTGGATCATTTGGACCAATTAGATGCAGTACTTAGGTTGCACGGCCGGTTTTATCCAGGAAGTAAAATCATAATAACAACCAGGCATTTGAGGTTGTTAAAGGCTCATTGGCATGCTTTCGGGCAGGGCCTTCCCATCGAAAGTTACATGAAACTTTCAGAGAAAGTAGTACACCAGAGTGGAGGACTTCCGTTAGCTCTTAAAGTTTTGGGCTCTTCTTTATTTGGGGAAAGTTTAACTGTATGGGAAAGTGCATTACAGAAATTAGAAGCTATTCCTAATGGTGAAATCATGAATAAACTCAAAATAAGCTACGAGTCTTTACAAGATGATCATGACCGCAAGTTGTTCCTCCACATTGCTTGTTTCTTTATTGGAAATGACAGATATAACATTGTGAGGTTACTAGATGAGTGCAATTTGTATACTACTGTTGGCATTCAAAATCTTGTTGATAGAGGTTTAGTAACCCTTGATGGATATGATAAGGTGCAGATGCATAATGTTTTCCGTGACATGGGAAGAGGAATTGTTTGCCAAGAATCAGAGGATCCTGAAAAACGCAGTAGGTTATGGCATTATAAGGATTCTATCAAAGTACTCACAGAAAAGAATGGTACTGAGACCATTGAAGGTCTTGTCCTGAACAGGCATATGCACCCTGCAAACACTCCTTCAGTAAACTCAAATGAGACAATCTTGGAAACCAATGCATTTGCAAGGATGTGCAAACTGAGACTACTCCATCTTAGTAATGTACAACTCAATGGATGTTATAAAGAACTTCCTACAAAATTGAGATGGTTGTGTTGGCATGCATTTCCTCTGGATTGTATACCCACTGATTTTCCTATGGCGAACCTGGTTGTTCTTGAAATGCATAATAGCAGCTTGACACAAATCTGGAAAGGGACCAAATATCTTCCATCATTGAAGATCCTTGATCTCAGTTATTCTCATGGCCTTACGGAAACTGCCAGTTTCTCACCTTGTCCCAATCTAGAGAAACTGGTTCTTGTAGATTGTGCAGGCCTGATTAATGTTCATGAATCAATTGGAAGCCTTGAGAGACTTGTTTACTTGAATATGAAAAATTGCAAAAATATTAGGATGCTTCCGAAGAATATTTGTATGCTGAAGTTACTTGAAACACTTATTATATCTGGTTGCTCAAATCTGAATATGTTTCCAATGGAGATGATGAAGAACATGAAATCTCTTAAAGTGCTGGAAACAAATGAAATTCCAATAAATCAATTACGCTTTACCGGTGGTGACATCAACTCATCGCCGGGAAGAAGTATTTGTATCTTTTGGACTTGTTTACCTCACTCTTTGGTAGAATTAAGTTTAAGTGGGTGCAATCTCTTGGATGATGGTTTTCCTGGGAATTTTGGTAACCTATCCTCATTGAAGAGATTAGGCTTACAAGATAACCCAATTTGTAGCCTACCAAATTGTGTCAGAGATATGAAGAGGCTTGATAAACTCTCCTTTTGCTTTTGTAAAAGGCTGAAATCACTTTTAGGACTACCAAAAGTAGATGAATTGTATGTGTATGCTTGTCATTCATTGGAAAAGATAACATATCAATCAAGTTTGTGCAAAGCAAACAATGTCTTTGGTCAAATGTGTAGCCTAGTTGAGAATGAATACATGTACAAGTTAGAACCCATTGGAAGTGTTGATGTAGAAATGATCGATGTTTTGGGGTTGTGCAACTTGGAACCTATGAGGACCGTTCAGCTGATGCAACCACAAGCCTCAGATCATTATCTGTGTCCGATCCAGGGACTGCATGAAGGTGGCATATTCAGCACATTCCTGTCTGGAAATGAGGTTCCAGTTGCTAAAGTCAGAAATAAGACCAAGGGTCTGGAGTGGATCTTTTGCCCATCATTCTATGGTATACCAGCTGAGGGGGAAGACATGATATGGTTAAGCCATTGGAAGTTGGAGAATCAATTAGAAGGTGGTGATGAAGTGACTGTTACAGTATTTATATTACCTTGGCGTCAGGTAAAGCAGTGTGGTATCCATGTTGTCCACGAGAAAGAAGAGAATATGAGTTTACGCAGAATCAGGGACCTTTGTTATCCATATGTCATTGGTGGAGATTTGTCAGGGTCTGAGGTCATGTCAGGAACATACTTCCTCTCTAGTCTAGCTAAACCATTGATATATAAGCCTCAGTTACATGAGTTCATTGGAGACTCTGATACAGAAAAAGAAGAGCAAGAGGATGAACTCATGCTTGCACCAACAGGGGGCAGCAGTAATTGTGATTTCAGAGACTGGAAGCGGCTCATCATTGCTGCTGGATTCTTTCTTTCTCTTTCTCTATTTGCTCGCTTTCCCCTCCCTCAGCGAAAGAAGCACAGTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000373 GO:0000375 GO:0000377 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0008535 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010257 GO:0010467 GO:0016043 GO:0016070 GO:0017004 GO:0022414 GO:0022607 GO:0032501 GO:0032502 GO:0032981 GO:0033108 GO:0033617 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0065003 GO:0071704 GO:0071840 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRS1_YhbY

Protein Analysis

1102

Amino Acids

124.43

Weight (kDa)

7.05

Isoelectric Point (pI)

43.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	17 - 190	1.9e-53	TIR domain
TIR_2	PF13676	19 - 118	2.4e-18	TIR domain
NB-ARC	PF00931	202 - 339	1e-13	NB-ARC domain
WHD_ROQ1	PF23282	419 - 489	6.9e-20	Disease resistance protein Roq1-like, winged-helix domain
LRR_14	PF23598	635 - 720	8.7e-06	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31010 AT4G31010
fragaria_vesca	FvH4_7g12730
malus_domestica	MD02G1197200.v1.1 MD07G1124100.v1.1
prunus_persica	Prupe.2G151400_v2.0.a1 Prupe.2G151400_v2.0.a1 Prupe.2G151400_v2.0.a1
pyrus_communis	pycom02g16050
rosa_chinensis	RchiOBHm_Chr1g0351741
rosa_laevigata	RLG00000028386
rosa_multiflora	Rmu_sc0001933.1_g000016
rosa_roxburghii	Rroxscaffold_4G00303580
rosa_rugosa	Rorug01G0221100
rosa_samantha	Rh1AG235000 Rh1BG205600 Rh1CG219700 Rh1DG232600
rosa_wichuraiana	Rw1G020460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1503, 1698
AasI	GACNNNNNNGTC	1 cut(s)	275
AccB1I	GGYRCC	1 cut(s)	261
AccI	GTMKAC	3 cut(s)	1346, 1756, 2830
AccII	CGCG	2 cut(s)	174, 312
AciI	CCGC	7 cut(s)	85, 136, 312, 384, 470, 1261, 3223
AclWI	GGATC	8 cut(s)	341, 643, 933, 1466, 1479, 1852, 2701, 2813
AcoI	YGGCCR	1 cut(s)	964
AcsI	RAATTY	3 cut(s)	701, 2163, 2311
AcuI	CTGAAG	3 cut(s)	706, 1581, 2078
AcyI	GRCGYC	1 cut(s)	2935
AfaI	GTAC	7 cut(s)	503, 951, 1092, 1521, 1540, 1680, 2582
AfiI	CCNNNNNNNGG	5 cut(s)	112, 1438, 2711, 2840, 3188
AflIII	ACRYGT	2 cut(s)	54, 2577
AgeI	ACCGGT	1 cut(s)	2189
AhdI	GACNNNNNGTC	1 cut(s)	2793
AjiI	CACGTC	1 cut(s)	55
AjnI	CCWGG	7 cut(s)	4, 117, 976, 1001, 1782, 2305, 2709
AleI	CACNNNNGTG	1 cut(s)	1098
AloI	GAACNNNNNNTCC	2 cut(s)	2745, 2777
Alw26I	GTCTC	7 cut(s)	357, 1538, 1607, 1651, 1984, 3126, 3207
AlwI	GGATC	8 cut(s)	341, 643, 933, 1466, 1479, 1852, 2701, 2813
AlwNI	CAGNNNCTG	3 cut(s)	2716, 3050, 3216
Ama87I	CYCGRG	1 cut(s)	600
AoxI	GGCC	6 cut(s)	114, 784, 964, 1048, 1882, 1951
ApeKI	GCWGC	4 cut(s)	386, 1809, 3192, 3236
ApoI	RAATTY	3 cut(s)	701, 2163, 2311
AseI	ATTAAT	1 cut(s)	1959
AsiGI	ACCGGT	1 cut(s)	2189
Asp700I	GAANNNNTTC	1 cut(s)	1194
AspS9I	GGNCC	6 cut(s)	115, 934, 1048, 1833, 2658, 3007
AsuC2I	CCSGG	1 cut(s)	2214
AsuHPI	GGTGA	8 cut(s)	20, 88, 439, 850, 1217, 1899, 2207, 2909
AvaI	CYCGRG	1 cut(s)	600
AvaII	GGWCC	4 cut(s)	934, 1833, 2658, 3007
BamHI	GGATCC	1 cut(s)	1471
BanI	GGYRCC	1 cut(s)	261
BanII	GRGCYC	1 cut(s)	1136
BauI	CACGAG	1 cut(s)	2969
BbsI	GAAGAC	3 cut(s)	84, 692, 2853
BbvCI	CCTCAGC	2 cut(s)	2838, 3285
BbvI	GCAGC	4 cut(s)	398, 1821, 3204, 3223
BceAI	ACGGC	2 cut(s)	129, 979
BciT130I	CCWGG	7 cut(s)	6, 119, 978, 1003, 1784, 2307, 2711
BciVI	GTATCC	1 cut(s)	2966
BclI	TGATCA	1 cut(s)	1252
BcnI	CCSGG	1 cut(s)	2214
BcoDI	GTCTC	7 cut(s)	357, 1538, 1607, 1651, 1984, 3126, 3207
BfaI	CTAG	7 cut(s)	396, 788, 1328, 1922, 2561, 3081, 3086
BfuI	GTATCC	1 cut(s)	2966
BglII	AGATCT	1 cut(s)	463
BisI	GCNGC	6 cut(s)	384, 387, 1810, 3193, 3224, 3237
BlsI	GCNGC	6 cut(s)	385, 388, 1811, 3194, 3225, 3238
BmcAI	AGTACT	2 cut(s)	951, 1521
Bme1390I	CCNGG	8 cut(s)	6, 119, 978, 1003, 1784, 2214, 2307, 2711
Bme18I	GGWCC	4 cut(s)	934, 1833, 2658, 3007
BmeRI	GACNNNNNGTC	1 cut(s)	2793
BmeT110I	CYCGRG	1 cut(s)	600
BmgBI	CACGTC	1 cut(s)	55
BmgT120I	GGNCC	6 cut(s)	115, 934, 1048, 1833, 2658, 3007
BmiI	GGNNCC	6 cut(s)	263, 1473, 1834, 2649, 2763, 3008
BmrFI	CCNGG	8 cut(s)	6, 119, 978, 1003, 1784, 2214, 2307, 2711
BmsI	GCATC	5 cut(s)	600, 934, 1407, 2022, 2661
BpiI	GAAGAC	3 cut(s)	84, 692, 2853
BpmI	CTGGAG	1 cut(s)	2819
Bpu10I	CCTNAGC	2 cut(s)	2838, 3285
BpuEI	CTTGAG	2 cut(s)	586, 2006
BpuMI	CCSGG	1 cut(s)	2214
Bsa29I	ATCGAT	2 cut(s)	345, 2622
BsaBI	GATNNNNATC	3 cut(s)	590, 924, 2694
BsaHI	GRCGYC	1 cut(s)	2935
BsaI	GGTCTC	1 cut(s)	1538
BsaJI	CCNNGG	5 cut(s)	117, 2306, 2710, 2790, 2930
BsaWI	WCCGGW	3 cut(s)	371, 402, 2189
Bsc4I	CCNNNNNNNGG	5 cut(s)	112, 1438, 2711, 2840, 3188
Bse118I	RCCGGY	3 cut(s)	328, 966, 2189
Bse1I	ACTGG	4 cut(s)	1899, 1935, 2765, 3221
Bse3DI	GCAATG	3 cut(s)	693, 1278, 3231
Bse8I	GATNNNNATC	3 cut(s)	590, 924, 2694
BseBI	CCWGG	7 cut(s)	6, 119, 978, 1003, 1784, 2307, 2711
BseCI	ATCGAT	2 cut(s)	345, 2622
BseDI	CCNNGG	5 cut(s)	117, 2306, 2710, 2790, 2930
BseJI	GATNNNNATC	3 cut(s)	590, 924, 2694
BseLI	CCNNNNNNNGG	5 cut(s)	112, 1438, 2711, 2840, 3188
BseMI	GCAATG	3 cut(s)	693, 1278, 3231
BseNI	ACTGG	4 cut(s)	1899, 1935, 2765, 3221
BseRI	GAGGAG	2 cut(s)	7, 21
BseX3I	CGGCCG	1 cut(s)	964
BseXI	GCAGC	4 cut(s)	398, 1821, 3204, 3223
BsgI	GTGCAG	2 cut(s)	1433, 1968
Bsh1236I	CGCG	2 cut(s)	174, 312
Bsh1285I	CGRYCG	1 cut(s)	967
BshFI	GGCC	6 cut(s)	116, 786, 966, 1050, 1884, 1953
BshNI	GGYRCC	1 cut(s)	261
BshTI	ACCGGT	1 cut(s)	2189
BshVI	ATCGAT	2 cut(s)	345, 2622
BsiEI	CGRYCG	1 cut(s)	967
BsiHKCI	CYCGRG	1 cut(s)	600
BsiSI	CCGG	9 cut(s)	129, 185, 329, 372, 403, 419, 967, 2190, 2213
BslFI	GGGAC	4 cut(s)	1846, 1899, 2727, 3020
BslI	CCNNNNNNNGG	5 cut(s)	112, 1438, 2711, 2840, 3188
BsmAI	GTCTC	7 cut(s)	357, 1538, 1607, 1651, 1984, 3126, 3207
BsmBI	CGTCTC	1 cut(s)	357
BsmFI	GGGAC	4 cut(s)	1846, 1899, 2727, 3020
BsmI	GAATGC	1 cut(s)	1359
BsnI	GGCC	6 cut(s)	116, 786, 966, 1050, 1884, 1953
Bso31I	GGTCTC	1 cut(s)	1538
BsoBI	CYCGRG	1 cut(s)	600
Bsp1286I	GDGCHC	1 cut(s)	1136
Bsp1407I	TGTACA	2 cut(s)	1678, 2580
BspACI	CCGC	7 cut(s)	85, 136, 312, 384, 470, 1261, 3223
BspANI	GGCC	6 cut(s)	116, 786, 966, 1050, 1884, 1953
BspDI	ATCGAT	2 cut(s)	345, 2622
BspFNI	CGCG	2 cut(s)	174, 312
BspHI	TCATGA	3 cut(s)	1212, 1255, 1966
BspLI	GGNNCC	6 cut(s)	263, 1473, 1834, 2649, 2763, 3008
BspPI	GGATC	8 cut(s)	341, 643, 933, 1466, 1479, 1852, 2701, 2813
BspQI	GCTCTTC	2 cut(s)	1141, 3147
BspT107I	GGYRCC	1 cut(s)	261
BspTNI	GGTCTC	1 cut(s)	1538
BsrDI	GCAATG	3 cut(s)	693, 1278, 3231
BsrFI	RCCGGY	3 cut(s)	328, 966, 2189
BsrGI	TGTACA	2 cut(s)	1678, 2580
BsrI	ACTGG	4 cut(s)	1899, 1935, 2765, 3221
BssAI	RCCGGY	3 cut(s)	328, 966, 2189
BssECI	CCNNGG	5 cut(s)	117, 2306, 2710, 2790, 2930
BssNAI	GTATAC	3 cut(s)	1347, 1757, 2831
BssNI	GRCGYC	1 cut(s)	2935
BssSI	CACGAG	1 cut(s)	2969
BssT1I	CCWWGG	2 cut(s)	2790, 2930
Bst1107I	GTATAC	3 cut(s)	1347, 1757, 2831
Bst2BI	CACGAG	1 cut(s)	2969
Bst2UI	CCWGG	7 cut(s)	6, 119, 978, 1003, 1784, 2307, 2711
Bst4CI	ACNGT	7 cut(s)	851, 1162, 1354, 2662, 2911, 2917, 3302
Bst6I	CTCTTC	8 cut(s)	25, 256, 1141, 1438, 2330, 2390, 2973, 3147
BstACI	GRCGYC	1 cut(s)	2935
BstAPI	GCANNNNNTGC	2 cut(s)	392, 458
BstAUI	TGTACA	2 cut(s)	1678, 2580
BstC8I	GCNNGC	6 cut(s)	310, 1035, 1737, 1951, 3177, 3271
BstEII	GGTNACC	1 cut(s)	2318
BstFNI	CGCG	2 cut(s)	174, 312
BstMAI	GTCTC	7 cut(s)	357, 1538, 1607, 1651, 1984, 3126, 3207
BstMCI	CGRYCG	1 cut(s)	967
BstMWI	GCNNNNNNNGC	6 cut(s)	305, 392, 458, 467, 2736, 3295
BstNI	CCWGG	7 cut(s)	6, 119, 978, 1003, 1784, 2307, 2711
BstNSI	RCATGY	3 cut(s)	1037, 1739, 2581
BstPI	GGTNACC	1 cut(s)	2318
BstSCI	CCNGG	8 cut(s)	4, 117, 976, 1001, 1782, 2212, 2305, 2709
BstUI	CGCG	2 cut(s)	174, 312
BstV1I	GCAGC	4 cut(s)	398, 1821, 3204, 3223
BstV2I	GAAGAC	3 cut(s)	84, 692, 2853
BstX2I	RGATCY	4 cut(s)	463, 1471, 1857, 2805
BstXI	CCANNNNNNTGG	2 cut(s)	497, 2797
BstYI	RGATCY	4 cut(s)	463, 1471, 1857, 2805
BstZ17I	GTATAC	3 cut(s)	1347, 1757, 2831
BstZI	CGGCCG	1 cut(s)	964
Bsu15I	ATCGAT	2 cut(s)	345, 2622
BsuI	GTATCC	1 cut(s)	2966
BsuRI	GGCC	6 cut(s)	116, 786, 966, 1050, 1884, 1953
BsuTUI	ATCGAT	2 cut(s)	345, 2622
BtgZI	GCGATG	1 cut(s)	2193
BtrI	CACGTC	1 cut(s)	55
BtsI	GCAGTG	1 cut(s)	2954
BtsIMutI	CAGTG	4 cut(s)	856, 1761, 2954, 3307
Cac8I	GCNNGC	6 cut(s)	310, 1035, 1737, 1951, 3177, 3271
CaiI	CAGNNNCTG	3 cut(s)	2716, 3050, 3216
CciI	TCATGA	3 cut(s)	1212, 1255, 1966
Cfr10I	RCCGGY	3 cut(s)	328, 966, 2189
Cfr13I	GGNCC	6 cut(s)	115, 934, 1048, 1833, 2658, 3007
ClaI	ATCGAT	2 cut(s)	345, 2622
CseI	GACGC	3 cut(s)	180, 314, 2924
CsiI	ACCWGGT	1 cut(s)	1782
Csp6I	GTAC	7 cut(s)	502, 950, 1091, 1520, 1539, 1679, 2581
CspAI	ACCGGT	1 cut(s)	2189
CspCI	CAANNNNNGTGG	2 cut(s)	1265, 1300
CviQI	GTAC	7 cut(s)	502, 950, 1091, 1520, 1539, 1679, 2581
DrdI	GACNNNNNNGTC	1 cut(s)	275
DriI	GACNNNNNGTC	1 cut(s)	2793
DseDI	GACNNNNNNGTC	1 cut(s)	275
EaeI	YGGCCR	1 cut(s)	964
EagI	CGGCCG	1 cut(s)	964
Eam1104I	CTCTTC	8 cut(s)	25, 256, 1141, 1438, 2330, 2390, 2973, 3147
Eam1105I	GACNNNNNGTC	1 cut(s)	2793
EarI	CTCTTC	8 cut(s)	25, 256, 1141, 1438, 2330, 2390, 2973, 3147
EclXI	CGGCCG	1 cut(s)	964
Eco130I	CCWWGG	2 cut(s)	2790, 2930
Eco147I	AGGCCT	1 cut(s)	1953
Eco24I	GRGCYC	1 cut(s)	1136
Eco31I	GGTCTC	1 cut(s)	1538
Eco32I	GATATC	1 cut(s)	178
Eco47I	GGWCC	4 cut(s)	934, 1833, 2658, 3007
Eco52I	CGGCCG	1 cut(s)	964
Eco57I	CTGAAG	3 cut(s)	706, 1581, 2078
Eco88I	CYCGRG	1 cut(s)	600
Eco91I	GGTNACC	1 cut(s)	2318
EcoO109I	RGGNCCY	2 cut(s)	1048, 3007
EcoO65I	GGTNACC	1 cut(s)	2318
EcoRII	CCWGG	7 cut(s)	4, 117, 976, 1001, 1782, 2305, 2709
EcoRV	GATATC	1 cut(s)	178
EcoT14I	CCWWGG	2 cut(s)	2790, 2930
EcoT22I	ATGCAT	4 cut(s)	1422, 1636, 1741, 1803
EcoT38I	GRGCYC	1 cut(s)	1136
ErhI	CCWWGG	2 cut(s)	2790, 2930
Esp3I	CGTCTC	1 cut(s)	357
FaqI	GGGAC	4 cut(s)	1846, 1899, 2727, 3020
FauI	CCCGC	2 cut(s)	92, 463
FauNDI	CATATG	2 cut(s)	1575, 3022
FbaI	TGATCA	1 cut(s)	1252
FblI	GTMKAC	3 cut(s)	1346, 1756, 2830
Fnu4HI	GCNGC	6 cut(s)	384, 387, 1810, 3193, 3224, 3237
FriOI	GRGCYC	1 cut(s)	1136
Fsp4HI	GCNGC	6 cut(s)	384, 387, 1810, 3193, 3224, 3237
FspBI	CTAG	7 cut(s)	396, 788, 1328, 1922, 2561, 3081, 3086
GluI	GCNGC	6 cut(s)	384, 387, 1810, 3193, 3224, 3237
GsuI	CTGGAG	1 cut(s)	2819
HaeIII	GGCC	6 cut(s)	116, 786, 966, 1050, 1884, 1953
HapII	CCGG	9 cut(s)	129, 185, 329, 372, 403, 419, 967, 2190, 2213
HgaI	GACGC	3 cut(s)	180, 314, 2924
Hin1I	GRCGYC	1 cut(s)	2935
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HpaII	CCGG	9 cut(s)	129, 185, 329, 372, 403, 419, 967, 2190, 2213
HphI	GGTGA	8 cut(s)	20, 88, 439, 850, 1217, 1899, 2207, 2909
Hpy99I	CGWCG	8 cut(s)	56, 155, 158, 227, 230, 272, 305, 308
HpyAV	CCTTC	8 cut(s)	424, 728, 854, 1061, 1547, 1605, 2717, 2885
HpyCH4III	ACNGT	7 cut(s)	851, 1162, 1354, 2662, 2911, 2917, 3302
HpyCH4IV	ACGT	2 cut(s)	54, 214
HpyF10VI	GCNNNNNNNGC	6 cut(s)	305, 392, 458, 467, 2736, 3295
HpySE526I	ACGT	2 cut(s)	54, 214
Hsp92I	GRCGYC	1 cut(s)	2935
Ksp22I	TGATCA	1 cut(s)	1252
LguI	GCTCTTC	2 cut(s)	1141, 3147
LmnI	GCTCC	2 cut(s)	187, 224
Lsp1109I	GCAGC	4 cut(s)	398, 1821, 3204, 3223
LweI	GCATC	5 cut(s)	600, 934, 1407, 2022, 2661
MabI	ACCWGGT	1 cut(s)	1782
MaeI	CTAG	7 cut(s)	396, 788, 1328, 1922, 2561, 3081, 3086
MaeII	ACGT	2 cut(s)	54, 214
MfeI	CAATTG	1 cut(s)	1974
MflI	RGATCY	4 cut(s)	463, 1471, 1857, 2805
MhlI	GDGCHC	1 cut(s)	1136
MlyI	GAGTC	3 cut(s)	612, 1247, 3128
MmeI	TCCRAC	2 cut(s)	313, 2856
Mph1103I	ATGCAT	4 cut(s)	1422, 1636, 1741, 1803
MroXI	GAANNNNTTC	1 cut(s)	1194
MslI	CAYNNNNRTG	3 cut(s)	1032, 1098, 2724
MspA1I	CMGCKG	2 cut(s)	2668, 2837
MspI	CCGG	9 cut(s)	129, 185, 329, 372, 403, 419, 967, 2190, 2213
MspR9I	CCNGG	8 cut(s)	6, 119, 978, 1003, 1784, 2214, 2307, 2711
MunI	CAATTG	1 cut(s)	1974
Mva1269I	GAATGC	1 cut(s)	1359
MvaI	CCWGG	7 cut(s)	6, 119, 978, 1003, 1784, 2307, 2711
MvnI	CGCG	2 cut(s)	174, 312
MwoI	GCNNNNNNNGC	6 cut(s)	305, 392, 458, 467, 2736, 3295
NciI	CCSGG	1 cut(s)	2214
NdeI	CATATG	2 cut(s)	1575, 3022
NlaIV	GGNNCC	6 cut(s)	263, 1473, 1834, 2649, 2763, 3008
NmuCI	GTSAC	3 cut(s)	1433, 2195, 2905
NsiI	ATGCAT	4 cut(s)	1422, 1636, 1741, 1803
NspI	RCATGY	3 cut(s)	1037, 1739, 2581
OliI	CACNNNNGTG	1 cut(s)	1098
PaeI	GCATGC	2 cut(s)	1037, 1739
PaeR7I	CTCGAG	1 cut(s)	600
PagI	TCATGA	3 cut(s)	1212, 1255, 1966
PceI	AGGCCT	1 cut(s)	1953
PciI	ACATGT	1 cut(s)	2577
PciSI	GCTCTTC	2 cut(s)	1141, 3147
PcsI	WCGNNNNNNNCGW	2 cut(s)	159, 276
PctI	GAATGC	1 cut(s)	1359
PdmI	GAANNNNTTC	1 cut(s)	1194
PfeI	GAWTC	9 cut(s)	132, 506, 864, 1463, 1508, 1970, 2881, 3000, 3243
PfoI	TCCNGGA	1 cut(s)	976
PinAI	ACCGGT	1 cut(s)	2189
PkrI	GCNGC	6 cut(s)	385, 388, 1811, 3194, 3225, 3238
PleI	GAGTC	3 cut(s)	611, 1246, 3128
PpsI	GAGTC	3 cut(s)	611, 1246, 3128
PpuMI	RGGWCCY	1 cut(s)	3007
PscI	ACATGT	1 cut(s)	2577
PshBI	ATTAAT	1 cut(s)	1959
PsiI	TTATAA	2 cut(s)	1503, 1698
Psp5II	RGGWCCY	1 cut(s)	3007
Psp6I	CCWGG	7 cut(s)	4, 117, 976, 1001, 1782, 2305, 2709
PspEI	GGTNACC	1 cut(s)	2318
PspGI	CCWGG	7 cut(s)	4, 117, 976, 1001, 1782, 2305, 2709
PspN4I	GGNNCC	6 cut(s)	263, 1473, 1834, 2649, 2763, 3008
PspPI	GGNCC	6 cut(s)	115, 934, 1048, 1833, 2658, 3007
PspPPI	RGGWCCY	1 cut(s)	3007
PstNI	CAGNNNCTG	3 cut(s)	2716, 3050, 3216
PsuI	RGATCY	4 cut(s)	463, 1471, 1857, 2805
PvuII	CAGCTG	2 cut(s)	2668, 2837
RsaI	GTAC	7 cut(s)	503, 951, 1092, 1521, 1540, 1680, 2582
RsaNI	GTAC	7 cut(s)	502, 950, 1091, 1520, 1539, 1679, 2581
RseI	CAYNNNNRTG	3 cut(s)	1032, 1098, 2724
SapI	GCTCTTC	2 cut(s)	1141, 3147
SatI	GCNGC	6 cut(s)	384, 387, 1810, 3193, 3224, 3237
Sau96I	GGNCC	6 cut(s)	115, 934, 1048, 1833, 2658, 3007
ScaI	AGTACT	2 cut(s)	951, 1521
SchI	GAGTC	3 cut(s)	612, 1247, 3128
ScrFI	CCNGG	8 cut(s)	6, 119, 978, 1003, 1784, 2214, 2307, 2711
SduI	GDGCHC	1 cut(s)	1136
SexAI	ACCWGGT	1 cut(s)	1782
SfaNI	GCATC	5 cut(s)	600, 934, 1407, 2022, 2661
Sfr274I	CTCGAG	1 cut(s)	600
SinI	GGWCC	4 cut(s)	934, 1833, 2658, 3007
SlaI	CTCGAG	1 cut(s)	600
SmiMI	CAYNNNNRTG	3 cut(s)	1032, 1098, 2724
SmlI	CTYRAG	3 cut(s)	565, 600, 1985
SmoI	CTYRAG	3 cut(s)	565, 600, 1985
SphI	GCATGC	2 cut(s)	1037, 1739
SseBI	AGGCCT	1 cut(s)	1953
SsiI	CCGC	7 cut(s)	85, 136, 312, 384, 470, 1261, 3223
SspI	AATATT	2 cut(s)	2026, 2047
SspMI	CTAG	7 cut(s)	396, 788, 1328, 1922, 2561, 3081, 3086
StuI	AGGCCT	1 cut(s)	1953
StyD4I	CCNGG	8 cut(s)	4, 117, 976, 1001, 1782, 2212, 2305, 2709
StyI	CCWWGG	2 cut(s)	2790, 2930
TaaI	ACNGT	7 cut(s)	851, 1162, 1354, 2662, 2911, 2917, 3302
TaiI	ACGT	2 cut(s)	57, 217
TaqI	TCGA	7 cut(s)	40, 162, 267, 345, 601, 1059, 2622
TatI	WGTACW	5 cut(s)	949, 1090, 1519, 1678, 2580
TauI	GCSGC	2 cut(s)	386, 3226
TfiI	GAWTC	9 cut(s)	132, 506, 864, 1463, 1508, 1970, 2881, 3000, 3243
TscAI	CASTG	4 cut(s)	856, 1768, 2954, 3307
TseFI	GTSAC	3 cut(s)	1433, 2195, 2905
TseI	GCWGC	4 cut(s)	386, 1809, 3192, 3236
Tsp45I	GTSAC	3 cut(s)	1433, 2195, 2905
TspGWI	ACGGA	6 cut(s)	211, 339, 843, 1101, 1421, 1904
TspRI	CASTG	4 cut(s)	856, 1768, 2954, 3307
VpaK11BI	GGWCC	4 cut(s)	934, 1833, 2658, 3007
VspI	ATTAAT	1 cut(s)	1959
XapI	RAATTY	3 cut(s)	701, 2163, 2311
XbaI	TCTAGA	1 cut(s)	1921
XceI	RCATGY	3 cut(s)	1037, 1739, 2581
XhoI	CTCGAG	1 cut(s)	600
XmiI	GTMKAC	3 cut(s)	1346, 1756, 2830
XmnI	GAANNNNTTC	1 cut(s)	1194
XspI	CTAG	7 cut(s)	396, 788, 1328, 1922, 2561, 3081, 3086
ZrmI	AGTACT	2 cut(s)	951, 1521
Zsp2I	ATGCAT	4 cut(s)	1422, 1636, 1741, 1803

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.