RLG00000028386

CRS2-associated factor 1

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
22069494 .. 22072308
2815 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028386

Sequence Viewer

Length: 1248 bp
ATGTTCCTCACCAAGCTCTCCCGCCAAAACCCAAACCCACTCGCCCTCATTTCCACGCGCCACCTCTCCACCCTCCACGACCGCTACTCCTTCAAACCCCCACCCTCCCTTTCCCCGAACCCCCAAGACCACCCCAACCCCAATCCTAACCCTAACCCTAACCCTAATTTCAAGAAGAAGCAGAAGCCCCGGTACCGTCCGCCGTCGTCTCTCGATCGCGAGGGTCAGGAGCCGATACATTCCGATTTGCCGTTCGATTTCAGGTACAGCTACACCGAGAGCAGCCCGGAAGCGCGGCCCATTGGGCTGCGGGAGCCCAAGTACTCGCCTTTTGGGCCGGGGCGGTTGGACCGGCCGTGGATCGGGGTCTGTGCCCCGGCCGTGGACCCGAAGGTGAGGTCCGTGGAGGGAACGGAGGAGGAGGACCTGAAGTTGGAGGAGGAGAGGAGGAGGAGAAGAGAAGCGGTGCAGGGAGAGCCGCTCAGTTCGGCTGAGAGGAAAGTTTTGGTGGAGAAATGTCAGAGAGGGAAAACCAAGAAGCAAATCAATTTGGGGAGAGATGGTTTGACTCACAATATGCTGAATGATATTCATAACCATTGGAAACATGAAGAAGCAGTGAGGATAAAATGTCAAGGTGTTCCGACTGTTGACATGAGAAATGTTTGCACCCAGCTCGAGGACAAAACCTTTGGAAAGATCATCTGTAGACATGGTAGTCTAATCATATTGTTCAGAGGCAGGAACTATGATCCCAAGAAGAGGCCTGTGATTCCATTAATGTTGTGGAAGCCACATGAGCCAAAATATCCCAAACTGATCAAAACTACGATTGATGGGCTAAGCATCGAGGAAACAAAGGAAATGAGGAAGAGAGGATTAGTTGTCCCTGCTTTAACAAAACTTGCCAGGAATGGTTACTATGGTAATCTGGTACCCATGGTTAGAGATGCGTTTCTCTCCTCTGAGCTGGTCCGGATAGACTGCCAGGGTCTTGAGAAGAGTGATTACAAGAAAATAGGCTGCAAACTTCGGGAGCTCGTGCCTTGTATCCTGGTGACATTTGATAAGGAGCAGATTGTGGTTTGGAAGGGCAAGGACTATAAGCCTGTAGAGGATGCCTACTTCCTTCCAGAACGAGAACTGTTTGATAATCCAGAAAGTGATGTGGTTTCTGGTGCAGAGCGGTGGGATAGTTCATATGACAATAGTAGCCAAACTGAGTACTACTCTGGTGACGATGAGTAG

Protein Analysis

416

Amino Acids

47.85

Weight (kDa)

8.96

Isoelectric Point (pI)

50.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRS1_YhbY PF01985 161 - 246 4.9e-18 CRS1 / YhbY (CRM) domain
CRS1_YhbY PF01985 281 - 364 2.2e-11 CRS1 / YhbY (CRM) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012010)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 717
Acc65I GGTACC 2 cut(s) 192, 934
AccB1I GGYRCC 2 cut(s) 192, 934
AccBSI CCGCTC 2 cut(s) 481, 1186
AccI GTMKAC 1 cut(s) 709
AccII CGCG 3 cut(s) 58, 219, 295
AccIII TCCGGA 1 cut(s) 975
AciI CCGC 9 cut(s) 22, 82, 200, 295, 310, 343, 464, 479, 1186
AclWI GGATC 2 cut(s) 368, 746
AcoI YGGCCR 2 cut(s) 353, 378
AcuI CTGAAG 1 cut(s) 449
AfaI GTAC 5 cut(s) 194, 266, 323, 936, 1226
AfiI CCNNNNNNNGG 5 cut(s) 362, 382, 433, 679, 762
AgsI TTSAA 2 cut(s) 94, 172
AjnI CCWGG 3 cut(s) 908, 987, 1053
AluBI AGCT 5 cut(s) 16, 270, 676, 970, 1039
AluI AGCT 5 cut(s) 16, 270, 676, 970, 1039
Alw21I GWGCWC 1 cut(s) 1041
Alw26I GTCTC 1 cut(s) 213
AlwI GGATC 2 cut(s) 368, 746
Ama87I CYCGRG 1 cut(s) 677
Aor13HI TCCGGA 1 cut(s) 975
AoxI GGCC 5 cut(s) 296, 335, 353, 378, 764
ApeKI GCWGC 3 cut(s) 282, 307, 1023
ArsI GACNNNNNNTTYG 4 cut(s) 383, 415, 674, 706
AseI ATTAAT 1 cut(s) 779
Asp718I GGTACC 2 cut(s) 192, 934
AspLEI GCGC 2 cut(s) 60, 295
AspS9I GGNCC 7 cut(s) 297, 335, 349, 385, 399, 424, 973
AsuC2I CCSGG 4 cut(s) 190, 287, 339, 377
AsuHPI GGTGA 3 cut(s) 406, 1069, 1247
AvaI CYCGRG 1 cut(s) 677
AvaII GGWCC 5 cut(s) 349, 385, 399, 424, 973
BaeGI GKGCMC 1 cut(s) 376
BanI GGYRCC 2 cut(s) 192, 934
BanII GRGCYC 2 cut(s) 318, 1041
BarI GAAGNNNNNNTAC 4 cut(s) 176, 208, 992, 1024
BauI CACGAG 1 cut(s) 1040
Bbv12I GWGCWC 1 cut(s) 1041
BbvI GCAGC 3 cut(s) 294, 294, 1010
BccI CCATC 2 cut(s) 554, 830
BceAI ACGGC 4 cut(s) 187, 235, 340, 365
BcgI CGANNNNNNTGC 2 cut(s) 658, 692
BciT130I CCWGG 3 cut(s) 910, 989, 1055
BciVI GTATCC 1 cut(s) 1061
BclI TGATCA 1 cut(s) 819
BcnI CCSGG 4 cut(s) 190, 287, 339, 377
BcoDI GTCTC 1 cut(s) 213
BfmI CTRYAG 2 cut(s) 706, 1110
BfuI GTATCC 1 cut(s) 1061
BglI GCCNNNNNGGC 2 cut(s) 304, 334
BisI GCNGC 5 cut(s) 283, 296, 308, 479, 1024
BlpI GCTNAGC 1 cut(s) 842
BlsI GCNGC 5 cut(s) 284, 297, 309, 480, 1025
BmcAI AGTACT 2 cut(s) 323, 1226
Bme1390I CCNGG 7 cut(s) 190, 287, 339, 377, 910, 989, 1055
Bme18I GGWCC 5 cut(s) 349, 385, 399, 424, 973
BmeT110I CYCGRG 1 cut(s) 677
BmgT120I GGNCC 7 cut(s) 297, 335, 349, 385, 399, 424, 973
BmiI GGNNCC 5 cut(s) 194, 231, 315, 387, 936
BmrFI CCNGG 7 cut(s) 190, 287, 339, 377, 910, 989, 1055
BmsI GCATC 3 cut(s) 855, 940, 1108
BplI GAGNNNNNCTC 4 cut(s) 465, 497, 1214, 1246
Bpu1102I GCTNAGC 1 cut(s) 842
BpuEI CTTGAG 1 cut(s) 1016
BpuMI CCSGG 4 cut(s) 190, 287, 339, 377
BsaJI CCNNGG 8 cut(s) 188, 338, 356, 375, 381, 402, 939, 988
BsaWI WCCGGW 1 cut(s) 975
BsaXI ACNNNNNCTCC 6 cut(s) 71, 101, 305, 335, 547, 577
Bsc4I CCNNNNNNNGG 5 cut(s) 362, 382, 433, 679, 762
Bse118I RCCGGY 1 cut(s) 351
BseAI TCCGGA 1 cut(s) 975
BseBI CCWGG 3 cut(s) 910, 989, 1055
BseDI CCNNGG 8 cut(s) 188, 338, 356, 375, 381, 402, 939, 988
BseGI GGATG 1 cut(s) 1123
BseLI CCNNNNNNNGG 5 cut(s) 362, 382, 433, 679, 762
BseMII CTCAG 4 cut(s) 483, 496, 957, 1212
BseRI GAGGAG 8 cut(s) 431, 434, 452, 455, 460, 463, 466, 952
BseSI GKGCMC 1 cut(s) 376
BseX3I CGGCCG 2 cut(s) 353, 378
BseXI GCAGC 3 cut(s) 294, 294, 1010
BseYI CCCAGC 1 cut(s) 672
BsgI GTGCAG 2 cut(s) 488, 1200
Bsh1236I CGCG 3 cut(s) 58, 219, 295
Bsh1285I CGRYCG 4 cut(s) 82, 217, 356, 381
BshFI GGCC 5 cut(s) 298, 337, 355, 380, 766
BshNI GGYRCC 2 cut(s) 192, 934
BsiEI CGRYCG 4 cut(s) 82, 217, 356, 381
BsiHKAI GWGCWC 1 cut(s) 1041
BsiHKCI CYCGRG 1 cut(s) 677
BsiSI CCGG 6 cut(s) 190, 287, 338, 352, 377, 976
BslFI GGGAC 1 cut(s) 872
BslI CCNNNNNNNGG 5 cut(s) 362, 382, 433, 679, 762
BsmAI GTCTC 1 cut(s) 213
BsmBI CGTCTC 1 cut(s) 213
BsmFI GGGAC 1 cut(s) 872
BsnI GGCC 5 cut(s) 298, 337, 355, 380, 766
BsoBI CYCGRG 1 cut(s) 677
Bsp1286I GDGCHC 3 cut(s) 318, 376, 1041
Bsp13I TCCGGA 1 cut(s) 975
Bsp143I GATC 5 cut(s) 214, 360, 699, 751, 819
Bsp1720I GCTNAGC 1 cut(s) 842
Bsp19I CCATGG 1 cut(s) 939
Bsp68I TCGCGA 1 cut(s) 219
BspACI CCGC 9 cut(s) 22, 82, 200, 295, 310, 343, 464, 479, 1186
BspANI GGCC 5 cut(s) 298, 337, 355, 380, 766
BspCNI CTCAG 4 cut(s) 484, 495, 958, 1213
BspEI TCCGGA 1 cut(s) 975
BspFNI CGCG 3 cut(s) 58, 219, 295
BspLI GGNNCC 5 cut(s) 194, 231, 315, 387, 936
BspPI GGATC 2 cut(s) 368, 746
BspT107I GGYRCC 2 cut(s) 192, 934
BsrBI CCGCTC 2 cut(s) 481, 1186
BsrFI RCCGGY 1 cut(s) 351
BssAI RCCGGY 1 cut(s) 351
BssECI CCNNGG 8 cut(s) 188, 338, 356, 375, 381, 402, 939, 988
BssMI GATC 5 cut(s) 214, 360, 699, 751, 819
BssSI CACGAG 1 cut(s) 1040
BssT1I CCWWGG 1 cut(s) 939
Bst2BI CACGAG 1 cut(s) 1040
Bst2UI CCWGG 3 cut(s) 910, 989, 1055
Bst4CI ACNGT 3 cut(s) 197, 649, 1146
Bst6I CTCTTC 4 cut(s) 451, 755, 866, 995
BstDEI CTNAG 5 cut(s) 482, 492, 842, 966, 1221
BstDSI CCRYGG 4 cut(s) 356, 381, 402, 939
BstF5I GGATG 1 cut(s) 1123
BstFNI CGCG 3 cut(s) 58, 219, 295
BstHHI GCGC 2 cut(s) 60, 295
BstKTI GATC 5 cut(s) 217, 363, 702, 754, 822
BstMAI GTCTC 1 cut(s) 213
BstMBI GATC 5 cut(s) 214, 360, 699, 751, 819
BstMCI CGRYCG 4 cut(s) 82, 217, 356, 381
BstMWI GCNNNNNNNGC 5 cut(s) 304, 313, 334, 475, 799
BstNI CCWGG 3 cut(s) 910, 989, 1055
BstSCI CCNGG 7 cut(s) 188, 285, 337, 375, 908, 987, 1053
BstSFI CTRYAG 2 cut(s) 706, 1110
BstSLI GKGCMC 1 cut(s) 376
BstUI CGCG 3 cut(s) 58, 219, 295
BstV1I GCAGC 3 cut(s) 294, 294, 1010
BstZI CGGCCG 2 cut(s) 353, 378
BsuI GTATCC 1 cut(s) 1061
BsuRI GGCC 5 cut(s) 298, 337, 355, 380, 766
BtgI CCRYGG 4 cut(s) 356, 381, 402, 939
BtsCI GGATG 1 cut(s) 1123
BtsI GCAGTG 1 cut(s) 624
BtsIMutI CAGTG 1 cut(s) 624
BtuMI TCGCGA 1 cut(s) 219
CfoI GCGC 2 cut(s) 60, 295
Cfr10I RCCGGY 1 cut(s) 351
Cfr13I GGNCC 7 cut(s) 297, 335, 349, 385, 399, 424, 973
Csp6I GTAC 5 cut(s) 193, 265, 322, 935, 1225
CviAII CATG 5 cut(s) 608, 655, 713, 797, 940
CviQI GTAC 5 cut(s) 193, 265, 322, 935, 1225
DdeI CTNAG 5 cut(s) 482, 492, 842, 966, 1221
DpnI GATC 5 cut(s) 216, 362, 701, 753, 821
DpnII GATC 5 cut(s) 214, 360, 699, 751, 819
DrdI GACNNNNNNGTC 1 cut(s) 717
DseDI GACNNNNNNGTC 1 cut(s) 717
EaeI YGGCCR 2 cut(s) 353, 378
EagI CGGCCG 2 cut(s) 353, 378
Eam1104I CTCTTC 4 cut(s) 451, 755, 866, 995
EarI CTCTTC 4 cut(s) 451, 755, 866, 995
EciI GGCGGA 1 cut(s) 189
Ecl136II GAGCTC 1 cut(s) 1039
EclXI CGGCCG 2 cut(s) 353, 378
Eco130I CCWWGG 1 cut(s) 939
Eco147I AGGCCT 1 cut(s) 766
Eco24I GRGCYC 2 cut(s) 318, 1041
Eco47I GGWCC 5 cut(s) 349, 385, 399, 424, 973
Eco52I CGGCCG 2 cut(s) 353, 378
Eco53kI GAGCTC 1 cut(s) 1039
Eco57I CTGAAG 1 cut(s) 449
Eco88I CYCGRG 1 cut(s) 677
EcoICRI GAGCTC 1 cut(s) 1039
EcoO109I RGGNCCY 1 cut(s) 424
EcoRII CCWGG 3 cut(s) 908, 987, 1053
EcoT14I CCWWGG 1 cut(s) 939
EcoT38I GRGCYC 2 cut(s) 318, 1041
ErhI CCWWGG 1 cut(s) 939
Esp3I CGTCTC 1 cut(s) 213
FaeI CATG 5 cut(s) 611, 658, 716, 800, 943
FaqI GGGAC 1 cut(s) 872
FatI CATG 5 cut(s) 607, 654, 712, 796, 939
FauI CCCGC 2 cut(s) 29, 303
FauNDI CATATG 1 cut(s) 1201
FbaI TGATCA 1 cut(s) 819
FblI GTMKAC 1 cut(s) 709
Fnu4HI GCNGC 5 cut(s) 283, 296, 308, 479, 1024
FokI GGATG 1 cut(s) 1130
FriOI GRGCYC 2 cut(s) 318, 1041
Fsp4HI GCNGC 5 cut(s) 283, 296, 308, 479, 1024
GlaI GCGC 2 cut(s) 59, 294
GluI GCNGC 5 cut(s) 283, 296, 308, 479, 1024
GsaI CCCAGC 1 cut(s) 676
HaeIII GGCC 5 cut(s) 298, 337, 355, 380, 766
HapII CCGG 6 cut(s) 190, 287, 338, 352, 377, 976
HhaI GCGC 2 cut(s) 60, 295
Hin1II CATG 5 cut(s) 611, 658, 716, 800, 943
Hin6I GCGC 2 cut(s) 58, 293
HinP1I GCGC 2 cut(s) 58, 293
HincII GTYRAC 1 cut(s) 652
HindII GTYRAC 1 cut(s) 652
HinfI GANTC 2 cut(s) 568, 772
HpaII CCGG 6 cut(s) 190, 287, 338, 352, 377, 976
HphI GGTGA 3 cut(s) 406, 1069, 1247
Hpy166II GTNNAC 3 cut(s) 385, 652, 710
Hpy188I TCNGA 5 cut(s) 244, 522, 645, 737, 967
Hpy188III TCNNGA 9 cut(s) 172, 212, 218, 227, 976, 995, 1034, 1133, 1157
Hpy8I GTNNAC 3 cut(s) 385, 652, 710
Hpy99I CGWCG 1 cut(s) 208
HpyAV CCTTC 4 cut(s) 100, 385, 1084, 1139
HpyCH4III ACNGT 3 cut(s) 197, 649, 1146
HpyCH4V TGCA 4 cut(s) 469, 669, 1026, 1181
HpyF10VI GCNNNNNNNGC 5 cut(s) 304, 313, 334, 475, 799
HpyF3I CTNAG 5 cut(s) 482, 492, 842, 966, 1221
Hsp92II CATG 5 cut(s) 611, 658, 716, 800, 943
HspAI GCGC 2 cut(s) 58, 293
Kpn2I TCCGGA 1 cut(s) 975
KpnI GGTACC 2 cut(s) 196, 938
Ksp22I TGATCA 1 cut(s) 819
Kzo9I GATC 5 cut(s) 214, 360, 699, 751, 819
LmnI GCTCC 4 cut(s) 229, 313, 1036, 1072
Lsp1109I GCAGC 3 cut(s) 294, 294, 1010
LweI GCATC 3 cut(s) 855, 940, 1108
MaeIII GTNAC 3 cut(s) 917, 1057, 1235
MalI GATC 5 cut(s) 216, 362, 701, 753, 821
MbiI CCGCTC 2 cut(s) 481, 1186
MboI GATC 5 cut(s) 214, 360, 699, 751, 819
MboII GAAGA 6 cut(s) 187, 468, 623, 772, 883, 1012
MhlI GDGCHC 3 cut(s) 318, 376, 1041
MluCI AATT 2 cut(s) 166, 547
MlyI GAGTC 1 cut(s) 562
MmeI TCCRAC 3 cut(s) 327, 414, 668
MroI TCCGGA 1 cut(s) 975
MseI TTAA 2 cut(s) 779, 896
MspI CCGG 6 cut(s) 190, 287, 338, 352, 377, 976
MspR9I CCNGG 7 cut(s) 190, 287, 339, 377, 910, 989, 1055
MvaI CCWGG 3 cut(s) 910, 989, 1055
MvnI CGCG 3 cut(s) 58, 219, 295
MwoI GCNNNNNNNGC 5 cut(s) 304, 313, 334, 475, 799
NciI CCSGG 4 cut(s) 190, 287, 339, 377
NcoI CCATGG 1 cut(s) 939
NdeI CATATG 1 cut(s) 1201
NdeII GATC 5 cut(s) 214, 360, 699, 751, 819
NlaIII CATG 5 cut(s) 611, 658, 716, 800, 943
NlaIV GGNNCC 5 cut(s) 194, 231, 315, 387, 936
NmuCI GTSAC 2 cut(s) 1057, 1235
NruI TCGCGA 1 cut(s) 219
PaeR7I CTCGAG 1 cut(s) 677
PceI AGGCCT 1 cut(s) 766
PfeI GAWTC 1 cut(s) 772
PkrI GCNGC 5 cut(s) 284, 297, 309, 480, 1025
Ple19I CGATCG 1 cut(s) 217
PleI GAGTC 1 cut(s) 562
PpsI GAGTC 1 cut(s) 562
PpuMI RGGWCCY 1 cut(s) 424
PshBI ATTAAT 1 cut(s) 779
Psp124BI GAGCTC 1 cut(s) 1041
Psp5II RGGWCCY 1 cut(s) 424
Psp6I CCWGG 3 cut(s) 908, 987, 1053
PspFI CCCAGC 1 cut(s) 672
PspGI CCWGG 3 cut(s) 908, 987, 1053
PspN4I GGNNCC 5 cut(s) 194, 231, 315, 387, 936
PspPI GGNCC 7 cut(s) 297, 335, 349, 385, 399, 424, 973
PspPPI RGGWCCY 1 cut(s) 424
PspXI VCTCGAGB 1 cut(s) 677
PvuI CGATCG 1 cut(s) 217
RruI TCGCGA 1 cut(s) 219
RsaI GTAC 5 cut(s) 194, 266, 323, 936, 1226
RsaNI GTAC 5 cut(s) 193, 265, 322, 935, 1225
SacI GAGCTC 1 cut(s) 1041
SaqAI TTAA 2 cut(s) 779, 896
SatI GCNGC 5 cut(s) 283, 296, 308, 479, 1024
Sau3AI GATC 5 cut(s) 214, 360, 699, 751, 819
Sau96I GGNCC 7 cut(s) 297, 335, 349, 385, 399, 424, 973
ScaI AGTACT 2 cut(s) 323, 1226
SchI GAGTC 1 cut(s) 562
ScrFI CCNGG 7 cut(s) 190, 287, 339, 377, 910, 989, 1055
SduI GDGCHC 3 cut(s) 318, 376, 1041
SfaNI GCATC 3 cut(s) 855, 940, 1108
SfcI CTRYAG 2 cut(s) 706, 1110
Sfr274I CTCGAG 1 cut(s) 677
SinI GGWCC 5 cut(s) 349, 385, 399, 424, 973
SlaI CTCGAG 1 cut(s) 677
SmlI CTYRAG 2 cut(s) 677, 995
SmoI CTYRAG 2 cut(s) 677, 995
Sse9I AATT 2 cut(s) 166, 547
SseBI AGGCCT 1 cut(s) 766
SsiI CCGC 9 cut(s) 22, 82, 200, 295, 310, 343, 464, 479, 1186
SstI GAGCTC 1 cut(s) 1041
StuI AGGCCT 1 cut(s) 766
StyD4I CCNGG 7 cut(s) 188, 285, 337, 375, 908, 987, 1053
StyI CCWWGG 1 cut(s) 939
TaaI ACNGT 3 cut(s) 197, 649, 1146
TaqI TCGA 4 cut(s) 213, 255, 678, 849
TasI AATT 2 cut(s) 166, 547
TatI WGTACW 2 cut(s) 321, 1224
TauI GCSGC 2 cut(s) 298, 481
TfiI GAWTC 1 cut(s) 772
Tru1I TTAA 2 cut(s) 779, 896
Tru9I TTAA 2 cut(s) 779, 896
TscAI CASTG 1 cut(s) 624
TseFI GTSAC 2 cut(s) 1057, 1235
TseI GCWGC 3 cut(s) 282, 307, 1023
Tsp45I GTSAC 2 cut(s) 1057, 1235
TspDTI ATGAA 3 cut(s) 581, 624, 1188
TspGWI ACGGA 2 cut(s) 391, 428
TspRI CASTG 1 cut(s) 624
VpaK11BI GGWCC 5 cut(s) 349, 385, 399, 424, 973
VspI ATTAAT 1 cut(s) 779
XcmI CCANNNNNNNNNTGG 1 cut(s) 783
XhoI CTCGAG 1 cut(s) 677
XmiI GTMKAC 1 cut(s) 709
ZrmI AGTACT 2 cut(s) 323, 1226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.