pycom02g16050

CRS2-associated factor 1

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Forward (+)
13098059 .. 13101554
3496 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g16050.4

Sequence Viewer

Length: 1371 bp
ATGGTTAATAAAATCTGTTTGTTCTCTAGATCATCGCATATCCAAGAAAAGCCCCGGAGGGGTGTTTTAGTTTTCGCTCGCGTTCTGCTCGCCCTTTCCGCTCACACTCAATCATCACACATCGAAGAAAAGCCCTCCATGTTGCTCACCAAGCTCTCCCGCCAAAAGCCAAACCCACTCGAACTCCTTCTCACGCGCCACCTCTCCAACCCCTCGAAACTCCACGACCGCTACTCCTTCAAACCCCCACCCTGCCTTTCCCCAGACCCCCAAGACCATAACCCTAACCCTGATCATATCCCCAAGAAAAAGCAGAAACCCCAGTACCGCCCGCCGTCGTCCCTCGACCGTACGGGTCAGAAGCCGATACATTCTGATTTGCCCTTCGATTTCAGGTACAGCTACACCGAGAGCAACCCGGCTGTGAGGCCCATCGGGCTGCGGGAGCCCAAGTACTCGCCTTTTGGGCCGGGCCGAATCGACCGCGAGTGGATCGGAGTGTGTGCCCCGGCCGTGGACTCGAAGGTGCGGTCGGTGGAGGGAGCGGAGGAGGACCCGAAGTTGGAGGAGAAGAGGAGGAGGAGGAGAGAGAAGGTTCAGGGAGAGCCTCTCAGTCCCGCTGAGAGGAAAATCTTGGTGGAAAAGTGCCAGAGGCCCAAAACCAAGAGGCAAATTAATTTGGGGAGAGATGGTTTAACTCACAATATGCTGAATGATATTCATAACCATTGGAAATTCGATGAGGCAGTGAGGATAAAATGTATAGGTGTTCCGACTGTTGACATGAAAAATGTTTGCAACCAGCTTGAGGACAAAACCTTTGGAAAAATCATCCACAGACATGGTGGTGTACTTGTATTATACAGAGGCAGGAACTATAACCCCAAGAAGAGGCCCGTGATTCCATTAATGTTGTGGAAACCACATGAGCCTGTATATCCCAAGCTGATCAAAACTACAATTGATGGCCTAAGCATTGCGGAAACAAAGGAAATGAGAAAGAGAGGATTAGCTGTCCCTGCCTTAACAAAACTTGCCAAGAATGGTTATTATGGTAGTTTGGTATCCATGGTCAGAGATGCTTTTCTCTGCTGTGAGCTGATTCGGATAGATTGCCAGGGATTTGAGAAGAGTGATTACAAGAAAATAGGCTGCAAACTTCGGGATCTTGTTCCTTGTATCCTGGTGACATTTGAGAAGGAACAGATTGTGGTGTGGAGAGGGAAGGACTATAAGCCTCCAGAGGGTGGATACTTACTTCCAGATCGAGAACTGTTCGATGGTCCAGAAGGTGATTTGGGTTCTGGCGCAGAGGCGTGTGATAAGTCAGAATCAGATGGCAACAGTAGCCTAAATGAATTCTCGTCTTGA

Protein Analysis

457

Amino Acids

51.97

Weight (kDa)

9.44

Isoelectric Point (pI)

49.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012010)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1247
AccBSI CCGCTC 2 cut(s) 101, 545
AccII CGCG 3 cut(s) 81, 196, 486
AclWI GGATC 2 cut(s) 500, 1173
AcoI YGGCCR 1 cut(s) 510
AcsI RAATTY 2 cut(s) 734, 1358
AfaI GTAC 5 cut(s) 326, 352, 398, 455, 852
AfiI CCNNNNNNNGG 8 cut(s) 59, 514, 562, 624, 808, 891, 1244, 1247
AgsI TTSAA 1 cut(s) 241
AjnI CCWGG 2 cut(s) 1116, 1182
AluBI AGCT 6 cut(s) 154, 402, 805, 946, 1013, 1099
AluI AGCT 6 cut(s) 154, 402, 805, 946, 1013, 1099
AlwI GGATC 2 cut(s) 500, 1173
AoxI GGCC 7 cut(s) 428, 467, 472, 510, 653, 893, 967
ApeKI GCWGC 2 cut(s) 439, 1152
ApoI RAATTY 2 cut(s) 734, 1358
ArsI GACNNNNNNTTYG 4 cut(s) 515, 547, 803, 835
AseI ATTAAT 2 cut(s) 675, 908
Asp700I GAANNNNTTC 1 cut(s) 186
AspLEI GCGC 2 cut(s) 198, 1310
AspS9I GGNCC 7 cut(s) 429, 467, 472, 553, 654, 894, 1283
AsuC2I CCSGG 4 cut(s) 55, 419, 471, 509
AsuHPI GGTGA 3 cut(s) 139, 1198, 1304
AvaII GGWCC 2 cut(s) 553, 1283
BaeGI GKGCMC 1 cut(s) 508
BaeI ACNNNNGTAYC 2 cut(s) 308, 341
BanII GRGCYC 1 cut(s) 450
BarI GAAGNNNNNNTAC 2 cut(s) 1121, 1153
BbvI GCAGC 2 cut(s) 426, 1139
BccI CCATC 5 cut(s) 440, 683, 959, 1274, 1331
BceAI ACGGC 2 cut(s) 319, 497
BciT130I CCWGG 2 cut(s) 1118, 1184
BciVI GTATCC 3 cut(s) 1075, 1190, 1244
BclI TGATCA 2 cut(s) 292, 948
BcnI CCSGG 4 cut(s) 55, 419, 471, 509
BfaI CTAG 1 cut(s) 27
BfuI GTATCC 3 cut(s) 1075, 1190, 1244
BglI GCCNNNNNGGC 2 cut(s) 436, 466
BisI GCNGC 2 cut(s) 440, 1153
BlsI GCNGC 2 cut(s) 441, 1154
BmcAI AGTACT 1 cut(s) 455
Bme1390I CCNGG 6 cut(s) 55, 419, 471, 509, 1118, 1184
Bme18I GGWCC 2 cut(s) 553, 1283
BmgT120I GGNCC 7 cut(s) 429, 467, 472, 553, 654, 894, 1283
BmiI GGNNCC 2 cut(s) 447, 555
BmrFI CCNGG 6 cut(s) 55, 419, 471, 509, 1118, 1184
BmrI ACTGGG 1 cut(s) 316
BmsI GCATC 1 cut(s) 1069
BmuI ACTGGG 1 cut(s) 316
BplI GAGNNNNNCTC 2 cut(s) 594, 626
BpmI CTGGAG 1 cut(s) 1224
Bpu10I CCTNAGC 1 cut(s) 971
BpuEI CTTGAG 1 cut(s) 827
BpuMI CCSGG 4 cut(s) 55, 419, 471, 509
BsaJI CCNNGG 5 cut(s) 53, 507, 513, 1068, 1117
BsaXI ACNNNNNCTCC 8 cut(s) 168, 198, 218, 248, 437, 467, 676, 706
Bsc4I CCNNNNNNNGG 8 cut(s) 59, 514, 562, 624, 808, 891, 1244, 1247
Bse1I ACTGG 1 cut(s) 322
Bse3DI GCAATG 1 cut(s) 975
BseBI CCWGG 2 cut(s) 1118, 1184
BseDI CCNNGG 5 cut(s) 53, 507, 513, 1068, 1117
BseGI GGATG 1 cut(s) 831
BseLI CCNNNNNNNGG 8 cut(s) 59, 514, 562, 624, 808, 891, 1244, 1247
BseMI GCAATG 1 cut(s) 975
BseMII CTCAG 2 cut(s) 612, 625
BseNI ACTGG 1 cut(s) 322
BseRI GAGGAG 6 cut(s) 563, 581, 589, 592, 595, 598
BseSI GKGCMC 1 cut(s) 508
BseX3I CGGCCG 1 cut(s) 510
BseXI GCAGC 2 cut(s) 426, 1139
Bsh1236I CGCG 3 cut(s) 81, 196, 486
Bsh1285I CGRYCG 5 cut(s) 229, 349, 484, 513, 533
BshFI GGCC 7 cut(s) 430, 469, 474, 512, 655, 895, 969
BsiEI CGRYCG 5 cut(s) 229, 349, 484, 513, 533
BsiSI CCGG 4 cut(s) 55, 419, 470, 509
BsiWI CGTACG 1 cut(s) 350
BslFI GGGAC 3 cut(s) 325, 600, 1001
BslI CCNNNNNNNGG 8 cut(s) 59, 514, 562, 624, 808, 891, 1244, 1247
BsmFI GGGAC 3 cut(s) 325, 600, 1001
BsnI GGCC 7 cut(s) 430, 469, 474, 512, 655, 895, 969
Bsp1286I GDGCHC 2 cut(s) 450, 508
Bsp143I GATC 6 cut(s) 29, 292, 492, 948, 1165, 1264
Bsp19I CCATGG 1 cut(s) 1068
BspANI GGCC 7 cut(s) 430, 469, 474, 512, 655, 895, 969
BspCNI CTCAG 2 cut(s) 613, 624
BspFNI CGCG 3 cut(s) 81, 196, 486
BspLI GGNNCC 2 cut(s) 447, 555
BspPI GGATC 2 cut(s) 500, 1173
BsrBI CCGCTC 2 cut(s) 101, 545
BsrDI GCAATG 1 cut(s) 975
BsrI ACTGG 1 cut(s) 322
BssECI CCNNGG 5 cut(s) 53, 507, 513, 1068, 1117
BssMI GATC 6 cut(s) 29, 292, 492, 948, 1165, 1264
BssT1I CCWWGG 1 cut(s) 1068
Bst2UI CCWGG 2 cut(s) 1118, 1184
Bst4CI ACNGT 4 cut(s) 350, 778, 1275, 1346
Bst6I CTCTTC 3 cut(s) 566, 884, 1124
BstC8I GCNNGC 3 cut(s) 79, 90, 332
BstDEI CTNAG 3 cut(s) 611, 621, 971
BstDSI CCRYGG 2 cut(s) 513, 1068
BstF5I GGATG 1 cut(s) 831
BstFNI CGCG 3 cut(s) 81, 196, 486
BstHHI GCGC 2 cut(s) 198, 1310
BstKTI GATC 6 cut(s) 32, 295, 495, 951, 1168, 1267
BstMBI GATC 6 cut(s) 29, 292, 492, 948, 1165, 1264
BstMCI CGRYCG 5 cut(s) 229, 349, 484, 513, 533
BstMWI GCNNNNNNNGC 7 cut(s) 98, 151, 436, 445, 466, 1019, 1347
BstNI CCWGG 2 cut(s) 1118, 1184
BstSCI CCNGG 6 cut(s) 53, 417, 469, 507, 1116, 1182
BstSLI GKGCMC 1 cut(s) 508
BstUI CGCG 3 cut(s) 81, 196, 486
BstV1I GCAGC 2 cut(s) 426, 1139
BstX2I RGATCY 1 cut(s) 1165
BstXI CCANNNNNNTGG 1 cut(s) 842
BstYI RGATCY 1 cut(s) 1165
BstZI CGGCCG 1 cut(s) 510
BsuI GTATCC 3 cut(s) 1075, 1190, 1244
BsuRI GGCC 7 cut(s) 430, 469, 474, 512, 655, 895, 969
BtgI CCRYGG 2 cut(s) 513, 1068
BtgZI GCGATG 1 cut(s) 18
BtsCI GGATG 1 cut(s) 831
BtsI GCAGTG 1 cut(s) 753
BtsIMutI CAGTG 1 cut(s) 753
Cac8I GCNNGC 3 cut(s) 79, 90, 332
CfoI GCGC 2 cut(s) 198, 1310
Cfr13I GGNCC 7 cut(s) 429, 467, 472, 553, 654, 894, 1283
Csp6I GTAC 5 cut(s) 325, 351, 397, 454, 851
CviAII CATG 5 cut(s) 139, 784, 842, 926, 1069
CviQI GTAC 5 cut(s) 325, 351, 397, 454, 851
DdeI CTNAG 3 cut(s) 611, 621, 971
DpnI GATC 6 cut(s) 31, 294, 494, 950, 1167, 1266
DpnII GATC 6 cut(s) 29, 292, 492, 948, 1165, 1264
EaeI YGGCCR 1 cut(s) 510
EagI CGGCCG 1 cut(s) 510
Eam1104I CTCTTC 3 cut(s) 566, 884, 1124
EarI CTCTTC 3 cut(s) 566, 884, 1124
EclXI CGGCCG 1 cut(s) 510
Eco130I CCWWGG 1 cut(s) 1068
Eco24I GRGCYC 1 cut(s) 450
Eco47I GGWCC 2 cut(s) 553, 1283
Eco52I CGGCCG 1 cut(s) 510
EcoO109I RGGNCCY 1 cut(s) 553
EcoRI GAATTC 1 cut(s) 1358
EcoRII CCWGG 2 cut(s) 1116, 1182
EcoT14I CCWWGG 1 cut(s) 1068
EcoT38I GRGCYC 1 cut(s) 450
ErhI CCWWGG 1 cut(s) 1068
FaeI CATG 5 cut(s) 142, 787, 845, 929, 1072
FaqI GGGAC 3 cut(s) 325, 600, 1001
FatI CATG 5 cut(s) 138, 783, 841, 925, 1068
FauI CCCGC 4 cut(s) 167, 339, 435, 625
FbaI TGATCA 2 cut(s) 292, 948
Fnu4HI GCNGC 2 cut(s) 440, 1153
FokI GGATG 1 cut(s) 818
FriOI GRGCYC 1 cut(s) 450
Fsp4HI GCNGC 2 cut(s) 440, 1153
FspBI CTAG 1 cut(s) 27
GlaI GCGC 2 cut(s) 197, 1309
GluI GCNGC 2 cut(s) 440, 1153
GsuI CTGGAG 1 cut(s) 1224
HaeIII GGCC 7 cut(s) 430, 469, 474, 512, 655, 895, 969
HapII CCGG 4 cut(s) 55, 419, 470, 509
HhaI GCGC 2 cut(s) 198, 1310
Hin1II CATG 5 cut(s) 142, 787, 845, 929, 1072
Hin6I GCGC 2 cut(s) 196, 1308
HinP1I GCGC 2 cut(s) 196, 1308
HincII GTYRAC 1 cut(s) 781
HindII GTYRAC 1 cut(s) 781
HinfI GANTC 5 cut(s) 477, 518, 901, 1102, 1331
HpaII CCGG 4 cut(s) 55, 419, 470, 509
HphI GGTGA 3 cut(s) 139, 1198, 1304
Hpy166II GTNNAC 3 cut(s) 517, 781, 851
Hpy188I TCNGA 8 cut(s) 360, 376, 497, 774, 1076, 1107, 1330, 1336
Hpy188III TCNNGA 7 cut(s) 27, 1163, 1241, 1262, 1268, 1286, 1368
Hpy8I GTNNAC 3 cut(s) 517, 781, 851
Hpy99I CGWCG 1 cut(s) 340
HpyAV CCTTC 8 cut(s) 197, 247, 394, 517, 586, 1192, 1219, 1283
HpyCH4III ACNGT 4 cut(s) 350, 778, 1275, 1346
HpyCH4V TGCA 2 cut(s) 798, 1155
HpyF10VI GCNNNNNNNGC 7 cut(s) 98, 151, 436, 445, 466, 1019, 1347
HpyF3I CTNAG 3 cut(s) 611, 621, 971
Hsp92II CATG 5 cut(s) 142, 787, 845, 929, 1072
HspAI GCGC 2 cut(s) 196, 1308
Ksp22I TGATCA 2 cut(s) 292, 948
Kzo9I GATC 6 cut(s) 29, 292, 492, 948, 1165, 1264
LmnI GCTCC 2 cut(s) 445, 542
Lsp1109I GCAGC 2 cut(s) 426, 1139
LweI GCATC 1 cut(s) 1069
MaeI CTAG 1 cut(s) 27
MaeIII GTNAC 1 cut(s) 1186
MalI GATC 6 cut(s) 31, 294, 494, 950, 1167, 1266
MbiI CCGCTC 2 cut(s) 101, 545
MboI GATC 6 cut(s) 29, 292, 492, 948, 1165, 1264
MboII GAAGA 4 cut(s) 137, 583, 901, 1141
MfeI CAATTG 1 cut(s) 960
MflI RGATCY 1 cut(s) 1165
MhlI GDGCHC 2 cut(s) 450, 508
MluCI AATT 5 cut(s) 672, 676, 734, 960, 1358
MlyI GAGTC 1 cut(s) 512
MmeI TCCRAC 3 cut(s) 231, 543, 797
MroXI GAANNNNTTC 1 cut(s) 186
MseI TTAA 5 cut(s) 6, 675, 695, 908, 1025
MslI CAYNNNNRTG 2 cut(s) 840, 846
MspA1I CMGCKG 1 cut(s) 620
MspI CCGG 4 cut(s) 55, 419, 470, 509
MspR9I CCNGG 6 cut(s) 55, 419, 471, 509, 1118, 1184
MunI CAATTG 1 cut(s) 960
MvaI CCWGG 2 cut(s) 1118, 1184
MvnI CGCG 3 cut(s) 81, 196, 486
MwoI GCNNNNNNNGC 7 cut(s) 98, 151, 436, 445, 466, 1019, 1347
NciI CCSGG 4 cut(s) 55, 419, 471, 509
NcoI CCATGG 1 cut(s) 1068
NdeII GATC 6 cut(s) 29, 292, 492, 948, 1165, 1264
NlaIII CATG 5 cut(s) 142, 787, 845, 929, 1072
NlaIV GGNNCC 2 cut(s) 447, 555
NmuCI GTSAC 1 cut(s) 1186
PdmI GAANNNNTTC 1 cut(s) 186
PfeI GAWTC 4 cut(s) 477, 901, 1102, 1331
Pfl23II CGTACG 1 cut(s) 350
PflMI CCANNNNNTGG 1 cut(s) 1247
PkrI GCNGC 2 cut(s) 441, 1154
PleI GAGTC 1 cut(s) 512
PpsI GAGTC 1 cut(s) 512
PpuMI RGGWCCY 1 cut(s) 553
PshBI ATTAAT 2 cut(s) 675, 908
Psp5II RGGWCCY 1 cut(s) 553
Psp6I CCWGG 2 cut(s) 1116, 1182
PspGI CCWGG 2 cut(s) 1116, 1182
PspLI CGTACG 1 cut(s) 350
PspN4I GGNNCC 2 cut(s) 447, 555
PspPI GGNCC 7 cut(s) 429, 467, 472, 553, 654, 894, 1283
PspPPI RGGWCCY 1 cut(s) 553
PsuI RGATCY 1 cut(s) 1165
RsaI GTAC 5 cut(s) 326, 352, 398, 455, 852
RsaNI GTAC 5 cut(s) 325, 351, 397, 454, 851
RseI CAYNNNNRTG 2 cut(s) 840, 846
SaqAI TTAA 5 cut(s) 6, 675, 695, 908, 1025
SatI GCNGC 2 cut(s) 440, 1153
Sau3AI GATC 6 cut(s) 29, 292, 492, 948, 1165, 1264
Sau96I GGNCC 7 cut(s) 429, 467, 472, 553, 654, 894, 1283
ScaI AGTACT 1 cut(s) 455
SchI GAGTC 1 cut(s) 512
ScrFI CCNGG 6 cut(s) 55, 419, 471, 509, 1118, 1184
SduI GDGCHC 2 cut(s) 450, 508
SfaNI GCATC 1 cut(s) 1069
SinI GGWCC 2 cut(s) 553, 1283
SmiMI CAYNNNNRTG 2 cut(s) 840, 846
SmlI CTYRAG 1 cut(s) 806
SmoI CTYRAG 1 cut(s) 806
Sse9I AATT 5 cut(s) 672, 676, 734, 960, 1358
SspMI CTAG 1 cut(s) 27
StyD4I CCNGG 6 cut(s) 53, 417, 469, 507, 1116, 1182
StyI CCWWGG 1 cut(s) 1068
TaaI ACNGT 4 cut(s) 350, 778, 1275, 1346
TasI AATT 5 cut(s) 672, 676, 734, 960, 1358
TatI WGTACW 2 cut(s) 453, 850
TfiI GAWTC 4 cut(s) 477, 901, 1102, 1331
Tru1I TTAA 5 cut(s) 6, 675, 695, 908, 1025
Tru9I TTAA 5 cut(s) 6, 675, 695, 908, 1025
TscAI CASTG 1 cut(s) 753
TseFI GTSAC 1 cut(s) 1186
TseI GCWGC 2 cut(s) 439, 1152
Tsp45I GTSAC 1 cut(s) 1186
TspDTI ATGAA 3 cut(s) 710, 800, 1371
TspRI CASTG 1 cut(s) 753
Van91I CCANNNNNTGG 1 cut(s) 1247
VpaK11BI GGWCC 2 cut(s) 553, 1283
VspI ATTAAT 2 cut(s) 675, 908
XapI RAATTY 2 cut(s) 734, 1358
XbaI TCTAGA 1 cut(s) 26
XcmI CCANNNNNNNNNTGG 2 cut(s) 842, 912
XmnI GAANNNNTTC 1 cut(s) 186
XspI CTAG 1 cut(s) 27
ZrmI AGTACT 1 cut(s) 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.