Rw1G020460

CRS2-associated factor 1

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Reverse (-)
44121834 .. 44124689
2856 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G020460.1

Sequence Viewer

Length: 1227 bp
ATGTTCCTCACCAAGCTCTCCCGCCAAAACCCAAACCCACTCGCCCTCATTTCCACGCGCCAGCTCTCCACCCTCCACGACCGCTACTCCTTCAAACCCCCACCCTCCCTTTCCCCGAACCCCCAAGACCCCCCCAACCCTAACCCTAATTTCAAGAAGAAGCAGAAGCCCCGGTACCGTCCGCCGTCCTCTCTCGATCGCGAGGGTCAGGAGCCGATACATTCCGATTTGCCGTTCGATTTCAGGTACAGCTACACCGAGAGCAGCCCGGAAGCGCGGCCCATTGGGCTGCGGGAGCCCAAGTACTCGCCTTTTGGGCCGGGGCGGTTGGACCGGCCATGGATCGGGGTCTGTGCCCCCGCCGTGGACCCGAAGGTGAGGTCCGTGGAGGGAACGGAGGAGGAGGACCTGAAGTTGGAGGAGGAGAGGAGGAGGAGGAGAGAAGCGGTGCAGGGAGAGCCGCTCAGTTCGGCTGAGAGGAAAATTTTGGTGGAGAAATGTCAGAGAGGGAAAACCAAGAAGCAAATCAATTTGGGGAGGGATGGGTTGACTCACAATATGCTGAATGATATTCATAACCATTGGAAACATGAAGAAGCAGTGAGGATAAAATGTCAAGGTGTTCCGACTGTTGACATGAGAAATGTTTGCACCCAGCTCGAGGACAAAACCTTTGGAAAGATCGTCTGTAGGCATGGTAGTCTAATCATATTGTTCAGAGGCAGGAACTATAATCCCAAGAAGAGGCCTGTGATTCCATTAATGTTGTGGAAGCCACATGAGCCAAAATATCCCAAACTGATCAAAACTACGATTGATGGGCTAAGCATCGAGGAAACAAAGGAAATGAGGAAGAGAGGATTAGTTGTCCCTGCTTCTAACAAAACTTGGAATGGTTACTATGGTAATCTGGTACCGATGGTTAGAGATGCGTTTCTCTCCTCTGAGCTGGCGCGGATAGACTGCCAGGGTCTTGAGAAGAGTGATTACAAGAAAATAGGCTGCAAACTTCGGGAGCTCGTGCCTTGTATCCTGGTGACATTTGATAAGGAACAGATTGTGGTTTGGAAGGGCAAGGAATATAAGCCTGTAGAGGATGCCTACTTCCTTCCAGAACGAGAACTGTTTGATAGTCCAGAAAGTGATGTGGTTTCTGGTGCAGAGCGGTGGGATAGCTCAGATGACAATAGTAGCCAAACTGAGTATTACTCTGGTGACGATGAGTAG

Protein Analysis

408

Amino Acids

47.01

Weight (kDa)

8.89

Isoelectric Point (pI)

52.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRS1_YhbY PF01985 155 - 240 2.8e-18 CRS1 / YhbY (CRM) domain
CRS1_YhbY PF01985 278 - 357 2.9e-06 CRS1 / YhbY (CRM) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0012010)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 174, 913
AccB1I GGYRCC 2 cut(s) 174, 913
AccBSI CCGCTC 2 cut(s) 463, 1165
AccII CGCG 4 cut(s) 58, 201, 277, 955
AclWI GGATC 1 cut(s) 350
AcoI YGGCCR 1 cut(s) 335
AcsI RAATTY 1 cut(s) 483
AcuI CTGAAG 1 cut(s) 431
AfaI GTAC 4 cut(s) 176, 248, 305, 915
AfiI CCNNNNNNNGG 5 cut(s) 344, 364, 415, 661, 744
AgsI TTSAA 2 cut(s) 94, 154
AjnI CCWGG 2 cut(s) 966, 1032
AluBI AGCT 7 cut(s) 16, 64, 252, 658, 949, 1018, 1176
AluI AGCT 7 cut(s) 16, 64, 252, 658, 949, 1018, 1176
Alw21I GWGCWC 1 cut(s) 1020
AlwI GGATC 1 cut(s) 350
Ama87I CYCGRG 1 cut(s) 659
AoxI GGCC 4 cut(s) 278, 317, 335, 746
ApeKI GCWGC 3 cut(s) 264, 289, 1002
ApoI RAATTY 1 cut(s) 483
ArsI GACNNNNNNTTYG 4 cut(s) 365, 397, 656, 688
AseI ATTAAT 1 cut(s) 761
Asp718I GGTACC 2 cut(s) 174, 913
AspLEI GCGC 3 cut(s) 60, 277, 955
AspS9I GGNCC 6 cut(s) 279, 317, 331, 367, 381, 406
AsuC2I CCSGG 3 cut(s) 172, 269, 321
AsuHPI GGTGA 3 cut(s) 388, 1048, 1226
AvaI CYCGRG 1 cut(s) 659
AvaII GGWCC 4 cut(s) 331, 367, 381, 406
BaeGI GKGCMC 1 cut(s) 358
BanI GGYRCC 2 cut(s) 174, 913
BanII GRGCYC 2 cut(s) 300, 1020
BarI GAAGNNNNNNTAC 4 cut(s) 158, 190, 971, 1003
BauI CACGAG 1 cut(s) 1019
Bbv12I GWGCWC 1 cut(s) 1020
BbvI GCAGC 3 cut(s) 276, 276, 989
BccI CCATC 3 cut(s) 536, 812, 913
BceAI ACGGC 3 cut(s) 169, 217, 347
BcgI CGANNNNNNTGC 2 cut(s) 640, 674
BciT130I CCWGG 2 cut(s) 968, 1034
BciVI GTATCC 1 cut(s) 1040
BclI TGATCA 1 cut(s) 801
BcnI CCSGG 3 cut(s) 172, 269, 321
BfmI CTRYAG 2 cut(s) 688, 1089
BfuI GTATCC 1 cut(s) 1040
BglI GCCNNNNNGGC 2 cut(s) 286, 316
BisI GCNGC 5 cut(s) 265, 278, 290, 461, 1003
BlpI GCTNAGC 1 cut(s) 824
BlsI GCNGC 5 cut(s) 266, 279, 291, 462, 1004
BmcAI AGTACT 1 cut(s) 305
Bme1390I CCNGG 5 cut(s) 172, 269, 321, 968, 1034
Bme18I GGWCC 4 cut(s) 331, 367, 381, 406
BmeT110I CYCGRG 1 cut(s) 659
BmgT120I GGNCC 6 cut(s) 279, 317, 331, 367, 381, 406
BmiI GGNNCC 5 cut(s) 176, 213, 297, 369, 915
BmrFI CCNGG 5 cut(s) 172, 269, 321, 968, 1034
BmsI GCATC 3 cut(s) 837, 919, 1087
BplI GAGNNNNNCTC 4 cut(s) 447, 479, 1193, 1225
Bpu1102I GCTNAGC 1 cut(s) 824
BpuEI CTTGAG 1 cut(s) 995
BpuMI CCSGG 3 cut(s) 172, 269, 321
BsaJI CCNNGG 6 cut(s) 170, 320, 338, 363, 384, 967
BsaXI ACNNNNNCTCC 4 cut(s) 71, 101, 287, 317
Bsc4I CCNNNNNNNGG 5 cut(s) 344, 364, 415, 661, 744
Bse118I RCCGGY 1 cut(s) 333
BseBI CCWGG 2 cut(s) 968, 1034
BseDI CCNNGG 6 cut(s) 170, 320, 338, 363, 384, 967
BseGI GGATG 2 cut(s) 547, 1102
BseLI CCNNNNNNNGG 5 cut(s) 344, 364, 415, 661, 744
BseMII CTCAG 5 cut(s) 465, 478, 936, 1191, 1191
BseRI GAGGAG 9 cut(s) 413, 416, 434, 437, 442, 445, 448, 451, 931
BseSI GKGCMC 1 cut(s) 358
BseXI GCAGC 3 cut(s) 276, 276, 989
BseYI CCCAGC 1 cut(s) 654
BsgI GTGCAG 2 cut(s) 470, 1179
Bsh1236I CGCG 4 cut(s) 58, 201, 277, 955
Bsh1285I CGRYCG 2 cut(s) 82, 199
BshFI GGCC 4 cut(s) 280, 319, 337, 748
BshNI GGYRCC 2 cut(s) 174, 913
BsiEI CGRYCG 2 cut(s) 82, 199
BsiHKAI GWGCWC 1 cut(s) 1020
BsiHKCI CYCGRG 1 cut(s) 659
BsiSI CCGG 4 cut(s) 172, 269, 320, 334
BslFI GGGAC 1 cut(s) 854
BslI CCNNNNNNNGG 5 cut(s) 344, 364, 415, 661, 744
BsmFI GGGAC 1 cut(s) 854
BsnI GGCC 4 cut(s) 280, 319, 337, 748
BsoBI CYCGRG 1 cut(s) 659
Bsp1286I GDGCHC 3 cut(s) 300, 358, 1020
Bsp143I GATC 4 cut(s) 196, 342, 681, 801
Bsp1720I GCTNAGC 1 cut(s) 824
Bsp19I CCATGG 1 cut(s) 338
Bsp68I TCGCGA 1 cut(s) 201
BspANI GGCC 4 cut(s) 280, 319, 337, 748
BspCNI CTCAG 5 cut(s) 466, 477, 937, 1190, 1192
BspFNI CGCG 4 cut(s) 58, 201, 277, 955
BspLI GGNNCC 5 cut(s) 176, 213, 297, 369, 915
BspPI GGATC 1 cut(s) 350
BspT107I GGYRCC 2 cut(s) 174, 913
BsrBI CCGCTC 2 cut(s) 463, 1165
BsrFI RCCGGY 1 cut(s) 333
BssAI RCCGGY 1 cut(s) 333
BssECI CCNNGG 6 cut(s) 170, 320, 338, 363, 384, 967
BssMI GATC 4 cut(s) 196, 342, 681, 801
BssSI CACGAG 1 cut(s) 1019
BssT1I CCWWGG 1 cut(s) 338
Bst2BI CACGAG 1 cut(s) 1019
Bst2UI CCWGG 2 cut(s) 968, 1034
Bst4CI ACNGT 3 cut(s) 179, 631, 1125
Bst6I CTCTTC 3 cut(s) 737, 848, 974
BstC8I GCNNGC 2 cut(s) 62, 951
BstDEI CTNAG 6 cut(s) 464, 474, 824, 945, 1177, 1200
BstDSI CCRYGG 3 cut(s) 338, 363, 384
BstF5I GGATG 2 cut(s) 547, 1102
BstFNI CGCG 4 cut(s) 58, 201, 277, 955
BstHHI GCGC 3 cut(s) 60, 277, 955
BstKTI GATC 4 cut(s) 199, 345, 684, 804
BstMBI GATC 4 cut(s) 196, 342, 681, 801
BstMCI CGRYCG 2 cut(s) 82, 199
BstMWI GCNNNNNNNGC 5 cut(s) 286, 295, 316, 457, 781
BstNI CCWGG 2 cut(s) 968, 1034
BstSCI CCNGG 5 cut(s) 170, 267, 319, 966, 1032
BstSFI CTRYAG 2 cut(s) 688, 1089
BstSLI GKGCMC 1 cut(s) 358
BstUI CGCG 4 cut(s) 58, 201, 277, 955
BstV1I GCAGC 3 cut(s) 276, 276, 989
BsuI GTATCC 1 cut(s) 1040
BsuRI GGCC 4 cut(s) 280, 319, 337, 748
BtgI CCRYGG 3 cut(s) 338, 363, 384
BtsCI GGATG 2 cut(s) 547, 1102
BtsI GCAGTG 1 cut(s) 606
BtsIMutI CAGTG 1 cut(s) 606
BtuMI TCGCGA 1 cut(s) 201
Cac8I GCNNGC 2 cut(s) 62, 951
CfoI GCGC 3 cut(s) 60, 277, 955
Cfr10I RCCGGY 1 cut(s) 333
Cfr13I GGNCC 6 cut(s) 279, 317, 331, 367, 381, 406
Csp6I GTAC 4 cut(s) 175, 247, 304, 914
CviAII CATG 5 cut(s) 339, 590, 637, 695, 779
CviQI GTAC 4 cut(s) 175, 247, 304, 914
DdeI CTNAG 6 cut(s) 464, 474, 824, 945, 1177, 1200
DpnI GATC 4 cut(s) 198, 344, 683, 803
DpnII GATC 4 cut(s) 196, 342, 681, 801
EaeI YGGCCR 1 cut(s) 335
Eam1104I CTCTTC 3 cut(s) 737, 848, 974
EarI CTCTTC 3 cut(s) 737, 848, 974
EciI GGCGGA 1 cut(s) 171
Ecl136II GAGCTC 1 cut(s) 1018
Eco130I CCWWGG 1 cut(s) 338
Eco147I AGGCCT 1 cut(s) 748
Eco24I GRGCYC 2 cut(s) 300, 1020
Eco47I GGWCC 4 cut(s) 331, 367, 381, 406
Eco53kI GAGCTC 1 cut(s) 1018
Eco57I CTGAAG 1 cut(s) 431
Eco88I CYCGRG 1 cut(s) 659
EcoICRI GAGCTC 1 cut(s) 1018
EcoO109I RGGNCCY 1 cut(s) 406
EcoRII CCWGG 2 cut(s) 966, 1032
EcoT14I CCWWGG 1 cut(s) 338
EcoT38I GRGCYC 2 cut(s) 300, 1020
ErhI CCWWGG 1 cut(s) 338
FaeI CATG 5 cut(s) 342, 593, 640, 698, 782
FaqI GGGAC 1 cut(s) 854
FatI CATG 5 cut(s) 338, 589, 636, 694, 778
FauI CCCGC 3 cut(s) 29, 285, 367
FbaI TGATCA 1 cut(s) 801
Fnu4HI GCNGC 5 cut(s) 265, 278, 290, 461, 1003
FokI GGATG 2 cut(s) 554, 1109
FriOI GRGCYC 2 cut(s) 300, 1020
Fsp4HI GCNGC 5 cut(s) 265, 278, 290, 461, 1003
GlaI GCGC 3 cut(s) 59, 276, 954
GluI GCNGC 5 cut(s) 265, 278, 290, 461, 1003
GsaI CCCAGC 1 cut(s) 658
HaeIII GGCC 4 cut(s) 280, 319, 337, 748
HapII CCGG 4 cut(s) 172, 269, 320, 334
HhaI GCGC 3 cut(s) 60, 277, 955
Hin1II CATG 5 cut(s) 342, 593, 640, 698, 782
Hin6I GCGC 3 cut(s) 58, 275, 953
HinP1I GCGC 3 cut(s) 58, 275, 953
HincII GTYRAC 2 cut(s) 549, 634
HindII GTYRAC 2 cut(s) 549, 634
HinfI GANTC 2 cut(s) 550, 754
HpaII CCGG 4 cut(s) 172, 269, 320, 334
HphI GGTGA 3 cut(s) 388, 1048, 1226
Hpy166II GTNNAC 3 cut(s) 367, 549, 634
Hpy188I TCNGA 6 cut(s) 226, 504, 627, 719, 946, 1180
Hpy188III TCNNGA 8 cut(s) 154, 194, 200, 209, 974, 1013, 1112, 1136
Hpy8I GTNNAC 3 cut(s) 367, 549, 634
HpyAV CCTTC 4 cut(s) 100, 367, 1063, 1118
HpyCH4III ACNGT 3 cut(s) 179, 631, 1125
HpyCH4V TGCA 4 cut(s) 451, 651, 1005, 1160
HpyF10VI GCNNNNNNNGC 5 cut(s) 286, 295, 316, 457, 781
HpyF3I CTNAG 6 cut(s) 464, 474, 824, 945, 1177, 1200
Hsp92II CATG 5 cut(s) 342, 593, 640, 698, 782
HspAI GCGC 3 cut(s) 58, 275, 953
KpnI GGTACC 2 cut(s) 178, 917
Ksp22I TGATCA 1 cut(s) 801
Kzo9I GATC 4 cut(s) 196, 342, 681, 801
LmnI GCTCC 3 cut(s) 211, 295, 1015
Lsp1109I GCAGC 3 cut(s) 276, 276, 989
LweI GCATC 3 cut(s) 837, 919, 1087
MaeIII GTNAC 3 cut(s) 896, 1036, 1214
MalI GATC 4 cut(s) 198, 344, 683, 803
MbiI CCGCTC 2 cut(s) 463, 1165
MboI GATC 4 cut(s) 196, 342, 681, 801
MboII GAAGA 5 cut(s) 169, 605, 754, 865, 991
MhlI GDGCHC 3 cut(s) 300, 358, 1020
MluCI AATT 3 cut(s) 148, 483, 529
MlyI GAGTC 1 cut(s) 544
MmeI TCCRAC 3 cut(s) 309, 396, 650
MseI TTAA 1 cut(s) 761
MspI CCGG 4 cut(s) 172, 269, 320, 334
MspR9I CCNGG 5 cut(s) 172, 269, 321, 968, 1034
MvaI CCWGG 2 cut(s) 968, 1034
MvnI CGCG 4 cut(s) 58, 201, 277, 955
MwoI GCNNNNNNNGC 5 cut(s) 286, 295, 316, 457, 781
NciI CCSGG 3 cut(s) 172, 269, 321
NcoI CCATGG 1 cut(s) 338
NdeII GATC 4 cut(s) 196, 342, 681, 801
NlaIII CATG 5 cut(s) 342, 593, 640, 698, 782
NlaIV GGNNCC 5 cut(s) 176, 213, 297, 369, 915
NmuCI GTSAC 2 cut(s) 1036, 1214
NruI TCGCGA 1 cut(s) 201
PaeR7I CTCGAG 1 cut(s) 659
PceI AGGCCT 1 cut(s) 748
PfeI GAWTC 1 cut(s) 754
PkrI GCNGC 5 cut(s) 266, 279, 291, 462, 1004
Ple19I CGATCG 1 cut(s) 199
PleI GAGTC 1 cut(s) 544
PpsI GAGTC 1 cut(s) 544
PpuMI RGGWCCY 1 cut(s) 406
PshBI ATTAAT 1 cut(s) 761
Psp124BI GAGCTC 1 cut(s) 1020
Psp5II RGGWCCY 1 cut(s) 406
Psp6I CCWGG 2 cut(s) 966, 1032
PspFI CCCAGC 1 cut(s) 654
PspGI CCWGG 2 cut(s) 966, 1032
PspN4I GGNNCC 5 cut(s) 176, 213, 297, 369, 915
PspPI GGNCC 6 cut(s) 279, 317, 331, 367, 381, 406
PspPPI RGGWCCY 1 cut(s) 406
PspXI VCTCGAGB 1 cut(s) 659
PvuI CGATCG 1 cut(s) 199
RruI TCGCGA 1 cut(s) 201
RsaI GTAC 4 cut(s) 176, 248, 305, 915
RsaNI GTAC 4 cut(s) 175, 247, 304, 914
SacI GAGCTC 1 cut(s) 1020
SaqAI TTAA 1 cut(s) 761
SatI GCNGC 5 cut(s) 265, 278, 290, 461, 1003
Sau3AI GATC 4 cut(s) 196, 342, 681, 801
Sau96I GGNCC 6 cut(s) 279, 317, 331, 367, 381, 406
ScaI AGTACT 1 cut(s) 305
SchI GAGTC 1 cut(s) 544
ScrFI CCNGG 5 cut(s) 172, 269, 321, 968, 1034
SduI GDGCHC 3 cut(s) 300, 358, 1020
SfaNI GCATC 3 cut(s) 837, 919, 1087
SfcI CTRYAG 2 cut(s) 688, 1089
Sfr274I CTCGAG 1 cut(s) 659
SinI GGWCC 4 cut(s) 331, 367, 381, 406
SlaI CTCGAG 1 cut(s) 659
SmlI CTYRAG 2 cut(s) 659, 974
SmoI CTYRAG 2 cut(s) 659, 974
Sse9I AATT 3 cut(s) 148, 483, 529
SseBI AGGCCT 1 cut(s) 748
SstI GAGCTC 1 cut(s) 1020
StuI AGGCCT 1 cut(s) 748
StyD4I CCNGG 5 cut(s) 170, 267, 319, 966, 1032
StyI CCWWGG 1 cut(s) 338
TaaI ACNGT 3 cut(s) 179, 631, 1125
TaqI TCGA 4 cut(s) 195, 237, 660, 831
TasI AATT 3 cut(s) 148, 483, 529
TatI WGTACW 1 cut(s) 303
TauI GCSGC 2 cut(s) 280, 463
TfiI GAWTC 1 cut(s) 754
Tru1I TTAA 1 cut(s) 761
Tru9I TTAA 1 cut(s) 761
TscAI CASTG 1 cut(s) 606
TseFI GTSAC 2 cut(s) 1036, 1214
TseI GCWGC 3 cut(s) 264, 289, 1002
Tsp45I GTSAC 2 cut(s) 1036, 1214
TspDTI ATGAA 2 cut(s) 563, 606
TspGWI ACGGA 2 cut(s) 373, 410
TspRI CASTG 1 cut(s) 606
VpaK11BI GGWCC 4 cut(s) 331, 367, 381, 406
VspI ATTAAT 1 cut(s) 761
XapI RAATTY 1 cut(s) 483
XcmI CCANNNNNNNNNTGG 1 cut(s) 765
XhoI CTCGAG 1 cut(s) 659
ZrmI AGTACT 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.