Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0012010

Physical Location & Seq

Genomic Coordinates Reverse (-)

17348689 .. 17351472

Gene Structure 2784 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1124100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGAAAGAGTGGAGGAAGACCCGAAGTTGGGGGAGAAATGGAGAAGGAGGAGAGAGAAGGTTCAAGGAGAGCCTCTCAGTCCAGCTGAGAGGAAAATCTTAGTGGAAAAGTGGCAAAGGCCTAAAACCAAGAGGCAAATTAATTTAGGGAGAGATGGTTTAACCCACAATATGCTGAATGATGTTCATAACCATTGGAAATTCGATGGGGCAGTGAGGATAAAATTTATAGGTGTTCCGACTGTTGACTTGAAAAATGTTTGCAACCAGCTTGAGGCATCTTATGACAAAACCTTTGGAAAAATCATCCACAGACATGGTGGTGTACTTGTATTATACAGGGGCAGGAACTATAACCCAAAGAAGAGGCCCGTGATTCCATTAATGTTTTTGGTATCAATGGTCGGAGATGTTTTTCTCTGCTGTCAGCTGATTCGGGTAGATTGCCAGGGATTTGAGAAGAGTGATTACAAGAAAATAGGCTGCAAACTTCAGGTAATTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000373 GO:0000375 GO:0000377 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0008535 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010257 GO:0010467 GO:0016043 GO:0016070 GO:0017004 GO:0022414 GO:0022607 GO:0032501 GO:0032502 GO:0032981 GO:0033108 GO:0033617 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0065003 GO:0071704 GO:0071840 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRS1_YhbY

Protein Analysis

169

Amino Acids

19.63

Weight (kDa)

9.74

Isoelectric Point (pI)

36.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRS1_YhbY	PF01985	26 - 114	1.6e-12	CRS1 / YhbY (CRM) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0012010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31010 AT4G31010
fragaria_vesca	FvH4_7g12730
malus_domestica	MD02G1197200.v1.1 MD07G1124100.v1.1
prunus_persica	Prupe.2G151400_v2.0.a1 Prupe.2G151400_v2.0.a1 Prupe.2G151400_v2.0.a1
pyrus_communis	pycom02g16050
rosa_chinensis	RchiOBHm_Chr1g0351741
rosa_laevigata	RLG00000028386
rosa_multiflora	Rmu_sc0001933.1_g000016
rosa_roxburghii	Rroxscaffold_4G00303580
rosa_rugosa	Rorug01G0221100
rosa_samantha	Rh1AG235000 Rh1BG205600 Rh1CG219700 Rh1DG232600
rosa_wichuraiana	Rw1G020460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	200, 224
AcuI	CTGAAG	1 cut(s)	476
AfaI	GTAC	1 cut(s)	327
AfiI	CCNNNNNNNGG	3 cut(s)	28, 29, 274
AgsI	TTSAA	2 cut(s)	65, 253
AjnI	CCWGG	1 cut(s)	447
AluBI	AGCT	3 cut(s)	86, 271, 430
AluI	AGCT	3 cut(s)	86, 271, 430
AoxI	GGCC	2 cut(s)	119, 368
ApeKI	GCWGC	1 cut(s)	483
ApoI	RAATTY	2 cut(s)	200, 224
ArsI	GACNNNNNNTTYG	2 cut(s)	278, 310
AseI	ATTAAT	2 cut(s)	141, 383
AspS9I	GGNCC	1 cut(s)	369
BarI	GAAGNNNNNNTAC	2 cut(s)	452, 484
BbsI	GAAGAC	1 cut(s)	24
BbvI	GCAGC	1 cut(s)	470
BccI	CCATC	2 cut(s)	149, 200
BciT130I	CCWGG	1 cut(s)	449
BisI	GCNGC	1 cut(s)	484
BlsI	GCNGC	1 cut(s)	485
Bme1390I	CCNGG	1 cut(s)	449
BmgT120I	GGNCC	1 cut(s)	369
BmrFI	CCNGG	1 cut(s)	449
BmsI	GCATC	1 cut(s)	287
BpiI	GAAGAC	1 cut(s)	24
BplI	GAGNNNNNCTC	2 cut(s)	60, 92
BpuEI	CTTGAG	1 cut(s)	293
BsaJI	CCNNGG	1 cut(s)	448
BsaXI	ACNNNNNCTCC	2 cut(s)	142, 172
Bsc4I	CCNNNNNNNGG	3 cut(s)	28, 29, 274
BseBI	CCWGG	1 cut(s)	449
BseDI	CCNNGG	1 cut(s)	448
BseGI	GGATG	1 cut(s)	306
BseLI	CCNNNNNNNGG	3 cut(s)	28, 29, 274
BseMII	CTCAG	2 cut(s)	78, 91
BseRI	GAGGAG	1 cut(s)	64
BseXI	GCAGC	1 cut(s)	470
BshFI	GGCC	2 cut(s)	121, 370
BslI	CCNNNNNNNGG	3 cut(s)	28, 29, 274
BsnI	GGCC	2 cut(s)	121, 370
BspANI	GGCC	2 cut(s)	121, 370
BspCNI	CTCAG	2 cut(s)	79, 90
BssECI	CCNNGG	1 cut(s)	448
Bst2UI	CCWGG	1 cut(s)	449
Bst4CI	ACNGT	1 cut(s)	244
Bst6I	CTCTTC	2 cut(s)	359, 455
BstDEI	CTNAG	3 cut(s)	77, 87, 100
BstF5I	GGATG	1 cut(s)	306
BstNI	CCWGG	1 cut(s)	449
BstSCI	CCNGG	1 cut(s)	447
BstV1I	GCAGC	1 cut(s)	470
BstV2I	GAAGAC	1 cut(s)	24
BstXI	CCANNNNNNTGG	1 cut(s)	317
BsuRI	GGCC	2 cut(s)	121, 370
BtsCI	GGATG	1 cut(s)	306
BtsI	GCAGTG	1 cut(s)	219
BtsIMutI	CAGTG	1 cut(s)	219
Cfr13I	GGNCC	1 cut(s)	369
Csp6I	GTAC	1 cut(s)	326
CviAII	CATG	1 cut(s)	317
CviJI	RGCY	7 cut(s)	73, 86, 121, 271, 370, 430, 483
CviKI_1	RGCY	7 cut(s)	73, 86, 121, 271, 370, 430, 483
CviQI	GTAC	1 cut(s)	326
DdeI	CTNAG	3 cut(s)	77, 87, 100
Eam1104I	CTCTTC	2 cut(s)	359, 455
EarI	CTCTTC	2 cut(s)	359, 455
Eco147I	AGGCCT	1 cut(s)	121
Eco57I	CTGAAG	1 cut(s)	476
EcoRII	CCWGG	1 cut(s)	447
FaeI	CATG	1 cut(s)	320
FaiI	YATR	7 cut(s)	173, 189, 230, 285, 318, 337, 354
FatI	CATG	1 cut(s)	316
Fnu4HI	GCNGC	1 cut(s)	484
FokI	GGATG	1 cut(s)	293
Fsp4HI	GCNGC	1 cut(s)	484
GluI	GCNGC	1 cut(s)	484
HaeIII	GGCC	2 cut(s)	121, 370
Hin1II	CATG	1 cut(s)	320
HincII	GTYRAC	1 cut(s)	247
HindII	GTYRAC	1 cut(s)	247
HinfI	GANTC	2 cut(s)	376, 433
Hpy166II	GTNNAC	2 cut(s)	247, 326
Hpy188I	TCNGA	2 cut(s)	240, 407
Hpy8I	GTNNAC	2 cut(s)	247, 326
HpyAV	CCTTC	2 cut(s)	39, 52
HpyCH4III	ACNGT	1 cut(s)	244
HpyCH4V	TGCA	2 cut(s)	264, 486
HpyF3I	CTNAG	3 cut(s)	77, 87, 100
Hsp92II	CATG	1 cut(s)	320
LpnPI	CCDG	7 cut(s)	96, 281, 325, 331, 434, 461, 479
Lsp1109I	GCAGC	1 cut(s)	470
LweI	GCATC	1 cut(s)	287
MboII	GAAGA	3 cut(s)	29, 376, 472
MluCI	AATT	5 cut(s)	138, 142, 200, 224, 498
MmeI	TCCRAC	2 cut(s)	263, 385
MnlI	CCTC	8 cut(s)	7, 42, 84, 84, 126, 210, 268, 360
MseI	TTAA	4 cut(s)	141, 161, 383, 505
MslI	CAYNNNNRTG	2 cut(s)	315, 321
MspA1I	CMGCKG	2 cut(s)	86, 430
MspR9I	CCNGG	1 cut(s)	449
MvaI	CCWGG	1 cut(s)	449
NlaIII	CATG	1 cut(s)	320
PceI	AGGCCT	1 cut(s)	121
PfeI	GAWTC	2 cut(s)	376, 433
PkrI	GCNGC	1 cut(s)	485
PshBI	ATTAAT	2 cut(s)	141, 383
Psp6I	CCWGG	1 cut(s)	447
PspGI	CCWGG	1 cut(s)	447
PspPI	GGNCC	1 cut(s)	369
PvuII	CAGCTG	2 cut(s)	86, 430
RsaI	GTAC	1 cut(s)	327
RsaNI	GTAC	1 cut(s)	326
RseI	CAYNNNNRTG	2 cut(s)	315, 321
SaqAI	TTAA	4 cut(s)	141, 161, 383, 505
SatI	GCNGC	1 cut(s)	484
Sau96I	GGNCC	1 cut(s)	369
ScrFI	CCNGG	1 cut(s)	449
SetI	ASST	7 cut(s)	63, 88, 235, 273, 296, 432, 498
SfaNI	GCATC	1 cut(s)	287
SmiMI	CAYNNNNRTG	2 cut(s)	315, 321
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
Sse9I	AATT	5 cut(s)	138, 142, 200, 224, 498
SseBI	AGGCCT	1 cut(s)	121
StuI	AGGCCT	1 cut(s)	121
StyD4I	CCNGG	1 cut(s)	447
TaaI	ACNGT	1 cut(s)	244
TaqI	TCGA	1 cut(s)	204
TasI	AATT	5 cut(s)	138, 142, 200, 224, 498
TatI	WGTACW	1 cut(s)	325
TfiI	GAWTC	2 cut(s)	376, 433
Tru1I	TTAA	4 cut(s)	141, 161, 383, 505
Tru9I	TTAA	4 cut(s)	141, 161, 383, 505
TscAI	CASTG	1 cut(s)	219
TseI	GCWGC	1 cut(s)	483
TspDTI	ATGAA	1 cut(s)	176
TspRI	CASTG	1 cut(s)	219
VspI	ATTAAT	2 cut(s)	141, 383
XapI	RAATTY	2 cut(s)	200, 224
XcmI	CCANNNNNNNNNTGG	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.