Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001933.1

Orthogroup ID

OG0012010

Physical Location & Seq

Genomic Coordinates Forward (+)

81742 .. 85010

Gene Structure 3269 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001933.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

atgttcctcaccaagctctcccgccaaaacccaaacccactcgccctcatttccacgcgccacctctccaccctccacgaccgctactccttcaaacccccaccctccctttccccgaacccccaagacccccccaaccctaaccctaatttcaagaagaagcagaagccccggtaccgtccgccgtcgtctctcgatcgcgagggtcaggagccgatacattccgatttgccgttcgatttcaggtacagctacaccgagagcagcccggaagcgcggcccattgggctgcgggagcccaagtactcgccttttgggccggggcggttggaccggccgtggatcggggtctgtgccccggccgtggacccgaaggtgaggtccgtggagggaacggaggaggaggagctgaagttggaggaggagaggaggaggaggagagaagcggtgcagggagagccgctcagttcggctgagaggaaaattttggtggagaaatgtcagagagggaaaaccaagaagcaaatcaatttggggagggatgggttgactcacaatatgctgaatgatattcataaccattggaaacatgaagaagcagtgaggataaaatgtcaaggtgttccgactgttgacatgagaaatgtttgcacccagctcgaggacaaaacctttggaaagatcatctgtaggcatggtagtctaatcatattgttcagaggcaggaactataatcccaagaagaggcctgtgattccattaatgttgtggaagccacatgagccaaaatatcccaaactgatcaaaactacgattgatgggctaagcattgaggaaacaaaggaaatgaggaagagaggattagttgtccctgctttaacaaaacttgccaggaatggttactatggtaatctggtaccgatggttagagatgcgtttctctcctctgagctggtgcggatagactgccagggtcttgagaagagtgattacaagaaaataggctgcaaacttcgggagctcgtgccttgtatcctggtgacatttgataaggaacagattgtggtttggaagggcaaggaatataagcctgtcgaggatgcctacttccttccagaacgagaactgtttgatagtccagaaagtgatgtggtttctggtgcagagcggtgggatagctcagatgacaatagtagccaaactgagtactactctggtgacgatgagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000373 GO:0000375 GO:0000377 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0008535 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010257 GO:0010467 GO:0016043 GO:0016070 GO:0017004 GO:0022414 GO:0022607 GO:0032501 GO:0032502 GO:0032981 GO:0033108 GO:0033617 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0065003 GO:0071704 GO:0071840 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRS1_YhbY

Protein Analysis

409

Amino Acids

47.14

Weight (kDa)

8.97

Isoelectric Point (pI)

52.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31010 AT4G31010
fragaria_vesca	FvH4_7g12730
malus_domestica	MD02G1197200.v1.1 MD07G1124100.v1.1
prunus_persica	Prupe.2G151400_v2.0.a1 Prupe.2G151400_v2.0.a1 Prupe.2G151400_v2.0.a1
pyrus_communis	pycom02g16050
rosa_chinensis	RchiOBHm_Chr1g0351741
rosa_laevigata	RLG00000028386
rosa_multiflora	Rmu_sc0001933.1_g000016
rosa_roxburghii	Rroxscaffold_4G00303580
rosa_rugosa	Rorug01G0221100
rosa_samantha	Rh1AG235000 Rh1BG205600 Rh1CG219700 Rh1DG232600
rosa_wichuraiana	Rw1G020460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	174, 916
AccB1I	GGYRCC	2 cut(s)	174, 916
AccBSI	CCGCTC	2 cut(s)	463, 1168
AccII	CGCG	3 cut(s)	58, 201, 277
AclWI	GGATC	1 cut(s)	350
AcoI	YGGCCR	2 cut(s)	335, 360
AcsI	RAATTY	1 cut(s)	483
AcuI	CTGAAG	1 cut(s)	431
AfaI	GTAC	5 cut(s)	176, 248, 305, 918, 1208
AfiI	CCNNNNNNNGG	4 cut(s)	344, 364, 661, 744
AgsI	TTSAA	2 cut(s)	94, 154
AjnI	CCWGG	3 cut(s)	890, 969, 1035
AluBI	AGCT	7 cut(s)	16, 252, 409, 658, 952, 1021, 1179
AluI	AGCT	7 cut(s)	16, 252, 409, 658, 952, 1021, 1179
Alw21I	GWGCWC	1 cut(s)	1023
Alw26I	GTCTC	1 cut(s)	195
AlwI	GGATC	1 cut(s)	350
Ama87I	CYCGRG	1 cut(s)	659
AoxI	GGCC	5 cut(s)	278, 317, 335, 360, 746
ApeKI	GCWGC	3 cut(s)	264, 289, 1005
ApoI	RAATTY	1 cut(s)	483
ArsI	GACNNNNNNTTYG	4 cut(s)	365, 397, 656, 688
AseI	ATTAAT	1 cut(s)	761
Asp718I	GGTACC	2 cut(s)	174, 916
AspLEI	GCGC	2 cut(s)	60, 277
AspS9I	GGNCC	5 cut(s)	279, 317, 331, 367, 381
AsuC2I	CCSGG	4 cut(s)	172, 269, 321, 359
AsuHPI	GGTGA	3 cut(s)	388, 1051, 1229
AvaI	CYCGRG	1 cut(s)	659
AvaII	GGWCC	3 cut(s)	331, 367, 381
BaeGI	GKGCMC	1 cut(s)	358
BanI	GGYRCC	2 cut(s)	174, 916
BanII	GRGCYC	2 cut(s)	300, 1023
BarI	GAAGNNNNNNTAC	4 cut(s)	158, 190, 974, 1006
BauI	CACGAG	1 cut(s)	1022
Bbv12I	GWGCWC	1 cut(s)	1023
BbvI	GCAGC	3 cut(s)	276, 276, 992
BccI	CCATC	3 cut(s)	536, 812, 916
BceAI	ACGGC	4 cut(s)	169, 217, 322, 347
BcgI	CGANNNNNNTGC	2 cut(s)	640, 674
BciT130I	CCWGG	3 cut(s)	892, 971, 1037
BciVI	GTATCC	1 cut(s)	1043
BclI	TGATCA	1 cut(s)	801
BcnI	CCSGG	4 cut(s)	172, 269, 321, 359
BcoDI	GTCTC	1 cut(s)	195
BfmI	CTRYAG	1 cut(s)	688
BfuI	GTATCC	1 cut(s)	1043
BglI	GCCNNNNNGGC	2 cut(s)	286, 316
BisI	GCNGC	5 cut(s)	265, 278, 290, 461, 1006
BlpI	GCTNAGC	1 cut(s)	824
BlsI	GCNGC	5 cut(s)	266, 279, 291, 462, 1007
BmcAI	AGTACT	2 cut(s)	305, 1208
Bme1390I	CCNGG	7 cut(s)	172, 269, 321, 359, 892, 971, 1037
Bme18I	GGWCC	3 cut(s)	331, 367, 381
BmeT110I	CYCGRG	1 cut(s)	659
BmgT120I	GGNCC	5 cut(s)	279, 317, 331, 367, 381
BmiI	GGNNCC	5 cut(s)	176, 213, 297, 369, 918
BmrFI	CCNGG	7 cut(s)	172, 269, 321, 359, 892, 971, 1037
BmsI	GCATC	2 cut(s)	922, 1090
BplI	GAGNNNNNCTC	4 cut(s)	447, 479, 1196, 1228
Bpu1102I	GCTNAGC	1 cut(s)	824
BpuEI	CTTGAG	1 cut(s)	998
BpuMI	CCSGG	4 cut(s)	172, 269, 321, 359
BsaJI	CCNNGG	7 cut(s)	170, 320, 338, 357, 363, 384, 970
BsaXI	ACNNNNNCTCC	6 cut(s)	71, 101, 287, 317, 398, 428
Bsc4I	CCNNNNNNNGG	4 cut(s)	344, 364, 661, 744
Bse118I	RCCGGY	1 cut(s)	333
BseBI	CCWGG	3 cut(s)	892, 971, 1037
BseDI	CCNNGG	7 cut(s)	170, 320, 338, 357, 363, 384, 970
BseGI	GGATG	2 cut(s)	547, 1105
BseLI	CCNNNNNNNGG	4 cut(s)	344, 364, 661, 744
BseMII	CTCAG	5 cut(s)	465, 478, 939, 1194, 1194
BseSI	GKGCMC	1 cut(s)	358
BseX3I	CGGCCG	2 cut(s)	335, 360
BseXI	GCAGC	3 cut(s)	276, 276, 992
BseYI	CCCAGC	1 cut(s)	654
BsgI	GTGCAG	2 cut(s)	470, 1182
Bsh1236I	CGCG	3 cut(s)	58, 201, 277
Bsh1285I	CGRYCG	4 cut(s)	82, 199, 338, 363
BshFI	GGCC	5 cut(s)	280, 319, 337, 362, 748
BshNI	GGYRCC	2 cut(s)	174, 916
BsiEI	CGRYCG	4 cut(s)	82, 199, 338, 363
BsiHKAI	GWGCWC	1 cut(s)	1023
BsiHKCI	CYCGRG	1 cut(s)	659
BsiSI	CCGG	5 cut(s)	172, 269, 320, 334, 359
BslFI	GGGAC	1 cut(s)	854
BslI	CCNNNNNNNGG	4 cut(s)	344, 364, 661, 744
BsmAI	GTCTC	1 cut(s)	195
BsmBI	CGTCTC	1 cut(s)	195
BsmFI	GGGAC	1 cut(s)	854
BsnI	GGCC	5 cut(s)	280, 319, 337, 362, 748
BsoBI	CYCGRG	1 cut(s)	659
Bsp1286I	GDGCHC	3 cut(s)	300, 358, 1023
Bsp143I	GATC	4 cut(s)	196, 342, 681, 801
Bsp1720I	GCTNAGC	1 cut(s)	824
Bsp68I	TCGCGA	1 cut(s)	201
BspANI	GGCC	5 cut(s)	280, 319, 337, 362, 748
BspCNI	CTCAG	5 cut(s)	466, 477, 940, 1193, 1195
BspFNI	CGCG	3 cut(s)	58, 201, 277
BspLI	GGNNCC	5 cut(s)	176, 213, 297, 369, 918
BspPI	GGATC	1 cut(s)	350
BspT107I	GGYRCC	2 cut(s)	174, 916
BsrBI	CCGCTC	2 cut(s)	463, 1168
BsrFI	RCCGGY	1 cut(s)	333
BssAI	RCCGGY	1 cut(s)	333
BssECI	CCNNGG	7 cut(s)	170, 320, 338, 357, 363, 384, 970
BssMI	GATC	4 cut(s)	196, 342, 681, 801
BssSI	CACGAG	1 cut(s)	1022
Bst2BI	CACGAG	1 cut(s)	1022
Bst2UI	CCWGG	3 cut(s)	892, 971, 1037
Bst4CI	ACNGT	3 cut(s)	179, 631, 1128
Bst6I	CTCTTC	3 cut(s)	737, 848, 977
BstDEI	CTNAG	6 cut(s)	464, 474, 824, 948, 1180, 1203
BstDSI	CCRYGG	3 cut(s)	338, 363, 384
BstF5I	GGATG	2 cut(s)	547, 1105
BstFNI	CGCG	3 cut(s)	58, 201, 277
BstHHI	GCGC	2 cut(s)	60, 277
BstKTI	GATC	4 cut(s)	199, 345, 684, 804
BstMAI	GTCTC	1 cut(s)	195
BstMBI	GATC	4 cut(s)	196, 342, 681, 801
BstMCI	CGRYCG	4 cut(s)	82, 199, 338, 363
BstMWI	GCNNNNNNNGC	5 cut(s)	286, 295, 316, 457, 781
BstNI	CCWGG	3 cut(s)	892, 971, 1037
BstSCI	CCNGG	7 cut(s)	170, 267, 319, 357, 890, 969, 1035
BstSFI	CTRYAG	1 cut(s)	688
BstSLI	GKGCMC	1 cut(s)	358
BstUI	CGCG	3 cut(s)	58, 201, 277
BstV1I	GCAGC	3 cut(s)	276, 276, 992
BstZI	CGGCCG	2 cut(s)	335, 360
BsuI	GTATCC	1 cut(s)	1043
BsuRI	GGCC	5 cut(s)	280, 319, 337, 362, 748
BtgI	CCRYGG	3 cut(s)	338, 363, 384
BtsCI	GGATG	2 cut(s)	547, 1105
BtsI	GCAGTG	1 cut(s)	606
BtsIMutI	CAGTG	1 cut(s)	606
BtuMI	TCGCGA	1 cut(s)	201
CfoI	GCGC	2 cut(s)	60, 277
Cfr10I	RCCGGY	1 cut(s)	333
Cfr13I	GGNCC	5 cut(s)	279, 317, 331, 367, 381
Csp6I	GTAC	5 cut(s)	175, 247, 304, 917, 1207
CviAII	CATG	4 cut(s)	590, 637, 695, 779
CviQI	GTAC	5 cut(s)	175, 247, 304, 917, 1207
DdeI	CTNAG	6 cut(s)	464, 474, 824, 948, 1180, 1203
DpnI	GATC	4 cut(s)	198, 344, 683, 803
DpnII	GATC	4 cut(s)	196, 342, 681, 801
EaeI	YGGCCR	2 cut(s)	335, 360
EagI	CGGCCG	2 cut(s)	335, 360
Eam1104I	CTCTTC	3 cut(s)	737, 848, 977
EarI	CTCTTC	3 cut(s)	737, 848, 977
EciI	GGCGGA	1 cut(s)	171
Ecl136II	GAGCTC	1 cut(s)	1021
EclXI	CGGCCG	2 cut(s)	335, 360
Eco147I	AGGCCT	1 cut(s)	748
Eco24I	GRGCYC	2 cut(s)	300, 1023
Eco47I	GGWCC	3 cut(s)	331, 367, 381
Eco52I	CGGCCG	2 cut(s)	335, 360
Eco53kI	GAGCTC	1 cut(s)	1021
Eco57I	CTGAAG	1 cut(s)	431
Eco88I	CYCGRG	1 cut(s)	659
EcoICRI	GAGCTC	1 cut(s)	1021
EcoRII	CCWGG	3 cut(s)	890, 969, 1035
EcoT38I	GRGCYC	2 cut(s)	300, 1023
Esp3I	CGTCTC	1 cut(s)	195
FaeI	CATG	4 cut(s)	593, 640, 698, 782
FaqI	GGGAC	1 cut(s)	854
FatI	CATG	4 cut(s)	589, 636, 694, 778
FauI	CCCGC	2 cut(s)	29, 285
FbaI	TGATCA	1 cut(s)	801
Fnu4HI	GCNGC	5 cut(s)	265, 278, 290, 461, 1006
FokI	GGATG	2 cut(s)	554, 1112
FriOI	GRGCYC	2 cut(s)	300, 1023
Fsp4HI	GCNGC	5 cut(s)	265, 278, 290, 461, 1006
GlaI	GCGC	2 cut(s)	59, 276
GluI	GCNGC	5 cut(s)	265, 278, 290, 461, 1006
GsaI	CCCAGC	1 cut(s)	658
HaeIII	GGCC	5 cut(s)	280, 319, 337, 362, 748
HapII	CCGG	5 cut(s)	172, 269, 320, 334, 359
HhaI	GCGC	2 cut(s)	60, 277
Hin1II	CATG	4 cut(s)	593, 640, 698, 782
Hin6I	GCGC	2 cut(s)	58, 275
HinP1I	GCGC	2 cut(s)	58, 275
HincII	GTYRAC	2 cut(s)	549, 634
HindII	GTYRAC	2 cut(s)	549, 634
HinfI	GANTC	2 cut(s)	550, 754
HpaII	CCGG	5 cut(s)	172, 269, 320, 334, 359
HphI	GGTGA	3 cut(s)	388, 1051, 1229
Hpy166II	GTNNAC	3 cut(s)	367, 549, 634
Hpy188I	TCNGA	6 cut(s)	226, 504, 627, 719, 949, 1183
Hpy188III	TCNNGA	8 cut(s)	154, 194, 200, 209, 977, 1016, 1115, 1139
Hpy8I	GTNNAC	3 cut(s)	367, 549, 634
Hpy99I	CGWCG	1 cut(s)	190
HpyAV	CCTTC	4 cut(s)	100, 367, 1066, 1121
HpyCH4III	ACNGT	3 cut(s)	179, 631, 1128
HpyCH4V	TGCA	4 cut(s)	451, 651, 1008, 1163
HpyF10VI	GCNNNNNNNGC	5 cut(s)	286, 295, 316, 457, 781
HpyF3I	CTNAG	6 cut(s)	464, 474, 824, 948, 1180, 1203
Hsp92II	CATG	4 cut(s)	593, 640, 698, 782
HspAI	GCGC	2 cut(s)	58, 275
KpnI	GGTACC	2 cut(s)	178, 920
Ksp22I	TGATCA	1 cut(s)	801
Kzo9I	GATC	4 cut(s)	196, 342, 681, 801
LmnI	GCTCC	4 cut(s)	211, 295, 406, 1018
Lsp1109I	GCAGC	3 cut(s)	276, 276, 992
LweI	GCATC	2 cut(s)	922, 1090
MaeIII	GTNAC	3 cut(s)	899, 1039, 1217
MalI	GATC	4 cut(s)	198, 344, 683, 803
MbiI	CCGCTC	2 cut(s)	463, 1168
MboI	GATC	4 cut(s)	196, 342, 681, 801
MboII	GAAGA	5 cut(s)	169, 605, 754, 865, 994
MhlI	GDGCHC	3 cut(s)	300, 358, 1023
MluCI	AATT	3 cut(s)	148, 483, 529
MlyI	GAGTC	1 cut(s)	544
MmeI	TCCRAC	3 cut(s)	309, 396, 650
MseI	TTAA	2 cut(s)	761, 878
MspI	CCGG	5 cut(s)	172, 269, 320, 334, 359
MspR9I	CCNGG	7 cut(s)	172, 269, 321, 359, 892, 971, 1037
MvaI	CCWGG	3 cut(s)	892, 971, 1037
MvnI	CGCG	3 cut(s)	58, 201, 277
MwoI	GCNNNNNNNGC	5 cut(s)	286, 295, 316, 457, 781
NciI	CCSGG	4 cut(s)	172, 269, 321, 359
NdeII	GATC	4 cut(s)	196, 342, 681, 801
NlaIII	CATG	4 cut(s)	593, 640, 698, 782
NlaIV	GGNNCC	5 cut(s)	176, 213, 297, 369, 918
NmuCI	GTSAC	2 cut(s)	1039, 1217
NruI	TCGCGA	1 cut(s)	201
PaeR7I	CTCGAG	1 cut(s)	659
PceI	AGGCCT	1 cut(s)	748
PfeI	GAWTC	1 cut(s)	754
PkrI	GCNGC	5 cut(s)	266, 279, 291, 462, 1007
Ple19I	CGATCG	1 cut(s)	199
PleI	GAGTC	1 cut(s)	544
PpsI	GAGTC	1 cut(s)	544
PshBI	ATTAAT	1 cut(s)	761
Psp124BI	GAGCTC	1 cut(s)	1023
Psp6I	CCWGG	3 cut(s)	890, 969, 1035
PspFI	CCCAGC	1 cut(s)	654
PspGI	CCWGG	3 cut(s)	890, 969, 1035
PspN4I	GGNNCC	5 cut(s)	176, 213, 297, 369, 918
PspPI	GGNCC	5 cut(s)	279, 317, 331, 367, 381
PspXI	VCTCGAGB	1 cut(s)	659
PvuI	CGATCG	1 cut(s)	199
RruI	TCGCGA	1 cut(s)	201
RsaI	GTAC	5 cut(s)	176, 248, 305, 918, 1208
RsaNI	GTAC	5 cut(s)	175, 247, 304, 917, 1207
SacI	GAGCTC	1 cut(s)	1023
SaqAI	TTAA	2 cut(s)	761, 878
SatI	GCNGC	5 cut(s)	265, 278, 290, 461, 1006
Sau3AI	GATC	4 cut(s)	196, 342, 681, 801
Sau96I	GGNCC	5 cut(s)	279, 317, 331, 367, 381
ScaI	AGTACT	2 cut(s)	305, 1208
SchI	GAGTC	1 cut(s)	544
ScrFI	CCNGG	7 cut(s)	172, 269, 321, 359, 892, 971, 1037
SduI	GDGCHC	3 cut(s)	300, 358, 1023
SfaNI	GCATC	2 cut(s)	922, 1090
SfcI	CTRYAG	1 cut(s)	688
Sfr274I	CTCGAG	1 cut(s)	659
SinI	GGWCC	3 cut(s)	331, 367, 381
SlaI	CTCGAG	1 cut(s)	659
SmlI	CTYRAG	2 cut(s)	659, 977
SmoI	CTYRAG	2 cut(s)	659, 977
Sse9I	AATT	3 cut(s)	148, 483, 529
SseBI	AGGCCT	1 cut(s)	748
SstI	GAGCTC	1 cut(s)	1023
StuI	AGGCCT	1 cut(s)	748
StyD4I	CCNGG	7 cut(s)	170, 267, 319, 357, 890, 969, 1035
TaaI	ACNGT	3 cut(s)	179, 631, 1128
TaqI	TCGA	4 cut(s)	195, 237, 660, 1095
TasI	AATT	3 cut(s)	148, 483, 529
TatI	WGTACW	2 cut(s)	303, 1206
TauI	GCSGC	2 cut(s)	280, 463
TfiI	GAWTC	1 cut(s)	754
Tru1I	TTAA	2 cut(s)	761, 878
Tru9I	TTAA	2 cut(s)	761, 878
TscAI	CASTG	1 cut(s)	606
TseFI	GTSAC	2 cut(s)	1039, 1217
TseI	GCWGC	3 cut(s)	264, 289, 1005
Tsp45I	GTSAC	2 cut(s)	1039, 1217
TspDTI	ATGAA	2 cut(s)	563, 606
TspGWI	ACGGA	2 cut(s)	373, 410
TspRI	CASTG	1 cut(s)	606
VpaK11BI	GGWCC	3 cut(s)	331, 367, 381
VspI	ATTAAT	1 cut(s)	761
XapI	RAATTY	1 cut(s)	483
XcmI	CCANNNNNNNNNTGG	1 cut(s)	765
XhoI	CTCGAG	1 cut(s)	659
ZrmI	AGTACT	2 cut(s)	305, 1208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.