Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0012010

Physical Location & Seq

Genomic Coordinates Forward (+)

19022768 .. 19025884

Gene Structure 3117 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1197200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGTTGCTCACCAAGCTCTCCCGCCAAAAGCCAAACCCACTCGCACTCCTTCTCACGCGCCACCTCTCCAACCCCTCGAAACTCCACGACCGCTACTCCTTCAAACCCCCACCATCCCTTTCCCCAAACCCCCAAGACCATAACCCTAACCCTGATCATATCCCCAAGAAAAAACAGAAACCCCAGTACCGCCCGCTGTCGTCCCTCGACCGTACGGGTCAGAAGCCGATACATTCTGATTTGCCCTTCGATTTCAGGTACAGCTACACCGAGAGCAACCCGGCTGTGAGGCCCATCGGGCTGCGGGAGCCCAAGTACTCGCCTTTTGGGCCGGGCCGAATCGACCGCGAGTGGATCGGAGTGTGTGCCCCGGCCGTGGACTCGAAGGTGCGCTCGGTGGAGGGAGTGGAGGACGACCCGAAGTTGGAGGAGAAGAGGAGGAGGAGGAGAGAGAAGGTTCAGGGAGAGCCTCTCAGTCCGGCTGAGAGGAAAATCTTAGTGGAAAAGTGCCAGAGGCCCAAAACCAAGAGGCAAATTAATTTGGGGAGAGATGGTTTAACTCACAATATGCTGAATGATATTCATAACCATTGGAAATTCGATGAGGCAGTGAGGATAAAATGTATAGGTGTTCCGACTGTTGACATGAAAAATGTTTGCAATCAGCTTGAGGACAAAACCTTTGGAAAAATCATCCACAGACATGGTGGTGTACTTGTATTATACAGAGGCAGGAACTATAACCCCAAGAAGAGGCCCGTGATTCCATTAATGTTGTGGAAACCACACGAGCCTGTATATCCCAAGCTGATCAAAACTACAATTGATGGCCTAAGCATTGCGGAAACAAAGGAAATGAGAAAGAGAGGATTAGCTGTCCCTGCTTTAACAAAACTTGCCAAGAATGGTTATTATGGTAGTTTGGTATCCATGGTCAGAGATGCTTTTCTCTGCTGTGAGCTGATTCGGATAGATTGCCAGGGATTTGAGAAGAGTGATTACAAGAAAATAGGCTGCAAACTTCGGGATCTTGTTCCTTGCATCCTGGTGACATTTGAGAAGGAACAGATTGTGGTTTGGAGAGGGAAGGGCTATAAGCCTCCAGAGGATGGATACTTCCTTCCAGATCGAGAACTGTTTGATAGTCCAGAAGGTCATTTGGGTTCTGGAGCAGAGGTGTGTGATAAGTCAGAATCAGATGGTAACAGTAGCCTAAAAGAATTCTCGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000373 GO:0000375 GO:0000377 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0008535 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010257 GO:0010467 GO:0016043 GO:0016070 GO:0017004 GO:0022414 GO:0022607 GO:0032501 GO:0032502 GO:0032981 GO:0033108 GO:0033617 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0065003 GO:0071704 GO:0071840 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRS1_YhbY

Protein Analysis

411

Amino Acids

46.87

Weight (kDa)

9.51

Isoelectric Point (pI)

43.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRS1_YhbY	PF01985	158 - 243	5e-18	CRS1 / YhbY (CRM) domain
CRS1_YhbY	PF01985	278 - 361	4.7e-12	CRS1 / YhbY (CRM) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31010 AT4G31010
fragaria_vesca	FvH4_7g12730
malus_domestica	MD02G1197200.v1.1 MD07G1124100.v1.1
prunus_persica	Prupe.2G151400_v2.0.a1 Prupe.2G151400_v2.0.a1 Prupe.2G151400_v2.0.a1
pyrus_communis	pycom02g16050
rosa_chinensis	RchiOBHm_Chr1g0351741
rosa_laevigata	RLG00000028386
rosa_multiflora	Rmu_sc0001933.1_g000016
rosa_roxburghii	Rroxscaffold_4G00303580
rosa_rugosa	Rorug01G0221100
rosa_samantha	Rh1AG235000 Rh1BG205600 Rh1CG219700 Rh1DG232600
rosa_wichuraiana	Rw1G020460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1109
AccII	CGCG	2 cut(s)	58, 348
AciI	CCGC	7 cut(s)	22, 91, 190, 194, 304, 346, 842
AclWI	GGATC	2 cut(s)	362, 1035
AcoI	YGGCCR	1 cut(s)	372
AcsI	RAATTY	2 cut(s)	596, 1220
AfaI	GTAC	5 cut(s)	188, 214, 260, 317, 714
AfiI	CCNNNNNNNGG	4 cut(s)	376, 424, 753, 1109
AgsI	TTSAA	1 cut(s)	103
AjnI	CCWGG	2 cut(s)	978, 1044
AluBI	AGCT	6 cut(s)	16, 264, 667, 808, 875, 961
AluI	AGCT	6 cut(s)	16, 264, 667, 808, 875, 961
AlwI	GGATC	2 cut(s)	362, 1035
AoxI	GGCC	7 cut(s)	290, 329, 334, 372, 515, 755, 829
ApeKI	GCWGC	2 cut(s)	301, 1014
ApoI	RAATTY	2 cut(s)	596, 1220
ArsI	GACNNNNNNTTYG	2 cut(s)	665, 697
AseI	ATTAAT	2 cut(s)	537, 770
AspLEI	GCGC	2 cut(s)	60, 393
AspS9I	GGNCC	5 cut(s)	291, 329, 334, 516, 756
AsuC2I	CCSGG	3 cut(s)	281, 333, 371
AsuHPI	GGTGA	1 cut(s)	1060
BaeGI	GKGCMC	1 cut(s)	370
BaeI	ACNNNNGTAYC	2 cut(s)	170, 203
BanII	GRGCYC	1 cut(s)	312
BarI	GAAGNNNNNNTAC	2 cut(s)	983, 1015
BauI	CACGAG	1 cut(s)	788
BbvI	GCAGC	2 cut(s)	288, 1001
BccI	CCATC	6 cut(s)	121, 302, 545, 821, 1103, 1193
BceAI	ACGGC	1 cut(s)	359
BciT130I	CCWGG	2 cut(s)	980, 1046
BciVI	GTATCC	2 cut(s)	937, 1106
BclI	TGATCA	2 cut(s)	154, 810
BcnI	CCSGG	3 cut(s)	281, 333, 371
BfuI	GTATCC	2 cut(s)	937, 1106
BglI	GCCNNNNNGGC	2 cut(s)	298, 328
BisI	GCNGC	2 cut(s)	302, 1015
BlsI	GCNGC	2 cut(s)	303, 1016
BmcAI	AGTACT	1 cut(s)	317
Bme1390I	CCNGG	5 cut(s)	281, 333, 371, 980, 1046
BmgT120I	GGNCC	5 cut(s)	291, 329, 334, 516, 756
BmiI	GGNNCC	1 cut(s)	309
BmrFI	CCNGG	5 cut(s)	281, 333, 371, 980, 1046
BmrI	ACTGGG	1 cut(s)	178
BmsI	GCATC	2 cut(s)	931, 1050
BmuI	ACTGGG	1 cut(s)	178
BplI	GAGNNNNNCTC	2 cut(s)	456, 488
BpmI	CTGGAG	2 cut(s)	1086, 1188
Bpu10I	CCTNAGC	1 cut(s)	833
BpuEI	CTTGAG	1 cut(s)	689
BpuMI	CCSGG	3 cut(s)	281, 333, 371
BsaJI	CCNNGG	4 cut(s)	369, 375, 930, 979
Bsc4I	CCNNNNNNNGG	4 cut(s)	376, 424, 753, 1109
Bse1I	ACTGG	1 cut(s)	184
Bse3DI	GCAATG	1 cut(s)	837
BseBI	CCWGG	2 cut(s)	980, 1046
BseDI	CCNNGG	4 cut(s)	369, 375, 930, 979
BseGI	GGATG	4 cut(s)	113, 693, 1041, 1114
BseLI	CCNNNNNNNGG	4 cut(s)	376, 424, 753, 1109
BseMI	GCAATG	1 cut(s)	837
BseMII	CTCAG	2 cut(s)	474, 487
BseNI	ACTGG	1 cut(s)	184
BseRI	GAGGAG	5 cut(s)	443, 451, 454, 457, 460
BseSI	GKGCMC	1 cut(s)	370
BseX3I	CGGCCG	1 cut(s)	372
BseXI	GCAGC	2 cut(s)	288, 1001
Bsh1236I	CGCG	2 cut(s)	58, 348
Bsh1285I	CGRYCG	4 cut(s)	91, 211, 346, 375
BshFI	GGCC	7 cut(s)	292, 331, 336, 374, 517, 757, 831
BsiEI	CGRYCG	4 cut(s)	91, 211, 346, 375
BsiSI	CCGG	4 cut(s)	281, 332, 371, 479
BsiWI	CGTACG	1 cut(s)	212
BslFI	GGGAC	2 cut(s)	187, 863
BslI	CCNNNNNNNGG	4 cut(s)	376, 424, 753, 1109
BsmFI	GGGAC	2 cut(s)	187, 863
BsnI	GGCC	7 cut(s)	292, 331, 336, 374, 517, 757, 831
Bsp1286I	GDGCHC	2 cut(s)	312, 370
Bsp143I	GATC	5 cut(s)	154, 354, 810, 1027, 1126
Bsp19I	CCATGG	1 cut(s)	930
BspACI	CCGC	7 cut(s)	22, 91, 190, 194, 304, 346, 842
BspANI	GGCC	7 cut(s)	292, 331, 336, 374, 517, 757, 831
BspCNI	CTCAG	2 cut(s)	475, 486
BspFNI	CGCG	2 cut(s)	58, 348
BspLI	GGNNCC	1 cut(s)	309
BspPI	GGATC	2 cut(s)	362, 1035
BsrDI	GCAATG	1 cut(s)	837
BsrI	ACTGG	1 cut(s)	184
BssECI	CCNNGG	4 cut(s)	369, 375, 930, 979
BssMI	GATC	5 cut(s)	154, 354, 810, 1027, 1126
BssSI	CACGAG	1 cut(s)	788
BssT1I	CCWWGG	1 cut(s)	930
Bst2BI	CACGAG	1 cut(s)	788
Bst2UI	CCWGG	2 cut(s)	980, 1046
Bst4CI	ACNGT	4 cut(s)	212, 640, 1137, 1208
Bst6I	CTCTTC	3 cut(s)	428, 746, 986
BstC8I	GCNNGC	1 cut(s)	194
BstDEI	CTNAG	4 cut(s)	473, 483, 496, 833
BstDSI	CCRYGG	2 cut(s)	375, 930
BstF5I	GGATG	4 cut(s)	113, 693, 1041, 1114
BstFNI	CGCG	2 cut(s)	58, 348
BstHHI	GCGC	2 cut(s)	60, 393
BstKTI	GATC	5 cut(s)	157, 357, 813, 1030, 1129
BstMBI	GATC	5 cut(s)	154, 354, 810, 1027, 1126
BstMCI	CGRYCG	4 cut(s)	91, 211, 346, 375
BstMWI	GCNNNNNNNGC	5 cut(s)	13, 298, 307, 328, 881
BstNI	CCWGG	2 cut(s)	980, 1046
BstSCI	CCNGG	5 cut(s)	279, 331, 369, 978, 1044
BstSLI	GKGCMC	1 cut(s)	370
BstUI	CGCG	2 cut(s)	58, 348
BstV1I	GCAGC	2 cut(s)	288, 1001
BstX2I	RGATCY	1 cut(s)	1027
BstXI	CCANNNNNNTGG	1 cut(s)	704
BstYI	RGATCY	1 cut(s)	1027
BstZI	CGGCCG	1 cut(s)	372
BsuI	GTATCC	2 cut(s)	937, 1106
BsuRI	GGCC	7 cut(s)	292, 331, 336, 374, 517, 757, 831
BtgI	CCRYGG	2 cut(s)	375, 930
BtsCI	GGATG	4 cut(s)	113, 693, 1041, 1114
BtsI	GCAGTG	1 cut(s)	615
BtsIMutI	CAGTG	1 cut(s)	615
Cac8I	GCNNGC	1 cut(s)	194
CfoI	GCGC	2 cut(s)	60, 393
Cfr13I	GGNCC	5 cut(s)	291, 329, 334, 516, 756
Csp6I	GTAC	5 cut(s)	187, 213, 259, 316, 713
CviAII	CATG	3 cut(s)	646, 704, 931
CviQI	GTAC	5 cut(s)	187, 213, 259, 316, 713
DdeI	CTNAG	4 cut(s)	473, 483, 496, 833
DpnI	GATC	5 cut(s)	156, 356, 812, 1029, 1128
DpnII	GATC	5 cut(s)	154, 354, 810, 1027, 1126
EaeI	YGGCCR	1 cut(s)	372
EagI	CGGCCG	1 cut(s)	372
Eam1104I	CTCTTC	3 cut(s)	428, 746, 986
EarI	CTCTTC	3 cut(s)	428, 746, 986
EclXI	CGGCCG	1 cut(s)	372
Eco130I	CCWWGG	1 cut(s)	930
Eco24I	GRGCYC	1 cut(s)	312
Eco52I	CGGCCG	1 cut(s)	372
EcoRI	GAATTC	1 cut(s)	1220
EcoRII	CCWGG	2 cut(s)	978, 1044
EcoT14I	CCWWGG	1 cut(s)	930
EcoT38I	GRGCYC	1 cut(s)	312
ErhI	CCWWGG	1 cut(s)	930
FaeI	CATG	3 cut(s)	649, 707, 934
FaqI	GGGAC	2 cut(s)	187, 863
FatI	CATG	3 cut(s)	645, 703, 930
FauI	CCCGC	3 cut(s)	29, 201, 297
FbaI	TGATCA	2 cut(s)	154, 810
Fnu4HI	GCNGC	2 cut(s)	302, 1015
FokI	GGATG	4 cut(s)	100, 680, 1028, 1121
FriOI	GRGCYC	1 cut(s)	312
Fsp4HI	GCNGC	2 cut(s)	302, 1015
GlaI	GCGC	2 cut(s)	59, 392
GluI	GCNGC	2 cut(s)	302, 1015
GsuI	CTGGAG	2 cut(s)	1086, 1188
HaeIII	GGCC	7 cut(s)	292, 331, 336, 374, 517, 757, 831
HapII	CCGG	4 cut(s)	281, 332, 371, 479
HhaI	GCGC	2 cut(s)	60, 393
Hin1II	CATG	3 cut(s)	649, 707, 934
Hin6I	GCGC	2 cut(s)	58, 391
HinP1I	GCGC	2 cut(s)	58, 391
HincII	GTYRAC	1 cut(s)	643
HindII	GTYRAC	1 cut(s)	643
HinfI	GANTC	5 cut(s)	339, 380, 763, 964, 1193
HpaII	CCGG	4 cut(s)	281, 332, 371, 479
HphI	GGTGA	1 cut(s)	1060
Hpy166II	GTNNAC	3 cut(s)	379, 643, 713
Hpy188I	TCNGA	8 cut(s)	222, 238, 359, 636, 938, 969, 1192, 1198
Hpy188III	TCNNGA	7 cut(s)	1025, 1103, 1124, 1130, 1148, 1167, 1230
Hpy8I	GTNNAC	3 cut(s)	379, 643, 713
HpyAV	CCTTC	9 cut(s)	59, 109, 256, 379, 448, 1054, 1081, 1130, 1145
HpyCH4III	ACNGT	4 cut(s)	212, 640, 1137, 1208
HpyCH4V	TGCA	3 cut(s)	660, 1017, 1041
HpyF10VI	GCNNNNNNNGC	5 cut(s)	13, 298, 307, 328, 881
HpyF3I	CTNAG	4 cut(s)	473, 483, 496, 833
Hsp92II	CATG	3 cut(s)	649, 707, 934
HspAI	GCGC	2 cut(s)	58, 391
Ksp22I	TGATCA	2 cut(s)	154, 810
Kzo9I	GATC	5 cut(s)	154, 354, 810, 1027, 1126
LmnI	GCTCC	2 cut(s)	307, 1169
Lsp1109I	GCAGC	2 cut(s)	288, 1001
LweI	GCATC	2 cut(s)	931, 1050
MaeIII	GTNAC	2 cut(s)	1048, 1202
MalI	GATC	5 cut(s)	156, 356, 812, 1029, 1128
MboI	GATC	5 cut(s)	154, 354, 810, 1027, 1126
MboII	GAAGA	3 cut(s)	445, 763, 1003
MfeI	CAATTG	1 cut(s)	822
MflI	RGATCY	1 cut(s)	1027
MhlI	GDGCHC	2 cut(s)	312, 370
MluCI	AATT	5 cut(s)	534, 538, 596, 822, 1220
MlyI	GAGTC	1 cut(s)	374
MmeI	TCCRAC	3 cut(s)	93, 405, 659
MseI	TTAA	4 cut(s)	537, 557, 770, 887
MslI	CAYNNNNRTG	3 cut(s)	702, 708, 1046
MspA1I	CMGCKG	1 cut(s)	196
MspI	CCGG	4 cut(s)	281, 332, 371, 479
MspR9I	CCNGG	5 cut(s)	281, 333, 371, 980, 1046
MunI	CAATTG	1 cut(s)	822
MvaI	CCWGG	2 cut(s)	980, 1046
MvnI	CGCG	2 cut(s)	58, 348
MwoI	GCNNNNNNNGC	5 cut(s)	13, 298, 307, 328, 881
NciI	CCSGG	3 cut(s)	281, 333, 371
NcoI	CCATGG	1 cut(s)	930
NdeII	GATC	5 cut(s)	154, 354, 810, 1027, 1126
NlaIII	CATG	3 cut(s)	649, 707, 934
NlaIV	GGNNCC	1 cut(s)	309
NmuCI	GTSAC	1 cut(s)	1048
PfeI	GAWTC	4 cut(s)	339, 763, 964, 1193
Pfl23II	CGTACG	1 cut(s)	212
PflMI	CCANNNNNTGG	1 cut(s)	1109
PkrI	GCNGC	2 cut(s)	303, 1016
PleI	GAGTC	1 cut(s)	374
PpsI	GAGTC	1 cut(s)	374
PshBI	ATTAAT	2 cut(s)	537, 770
Psp6I	CCWGG	2 cut(s)	978, 1044
PspGI	CCWGG	2 cut(s)	978, 1044
PspLI	CGTACG	1 cut(s)	212
PspN4I	GGNNCC	1 cut(s)	309
PspPI	GGNCC	5 cut(s)	291, 329, 334, 516, 756
PsuI	RGATCY	1 cut(s)	1027
RsaI	GTAC	5 cut(s)	188, 214, 260, 317, 714
RsaNI	GTAC	5 cut(s)	187, 213, 259, 316, 713
RseI	CAYNNNNRTG	3 cut(s)	702, 708, 1046
SaqAI	TTAA	4 cut(s)	537, 557, 770, 887
SatI	GCNGC	2 cut(s)	302, 1015
Sau3AI	GATC	5 cut(s)	154, 354, 810, 1027, 1126
Sau96I	GGNCC	5 cut(s)	291, 329, 334, 516, 756
ScaI	AGTACT	1 cut(s)	317
SchI	GAGTC	1 cut(s)	374
ScrFI	CCNGG	5 cut(s)	281, 333, 371, 980, 1046
SduI	GDGCHC	2 cut(s)	312, 370
SfaNI	GCATC	2 cut(s)	931, 1050
SmiMI	CAYNNNNRTG	3 cut(s)	702, 708, 1046
SmlI	CTYRAG	1 cut(s)	668
SmoI	CTYRAG	1 cut(s)	668
Sse9I	AATT	5 cut(s)	534, 538, 596, 822, 1220
SsiI	CCGC	7 cut(s)	22, 91, 190, 194, 304, 346, 842
StyD4I	CCNGG	5 cut(s)	279, 331, 369, 978, 1044
StyI	CCWWGG	1 cut(s)	930
TaaI	ACNGT	4 cut(s)	212, 640, 1137, 1208
TaqI	TCGA	7 cut(s)	77, 207, 249, 342, 383, 600, 1129
TasI	AATT	5 cut(s)	534, 538, 596, 822, 1220
TatI	WGTACW	2 cut(s)	315, 712
TfiI	GAWTC	4 cut(s)	339, 763, 964, 1193
Tru1I	TTAA	4 cut(s)	537, 557, 770, 887
Tru9I	TTAA	4 cut(s)	537, 557, 770, 887
TscAI	CASTG	1 cut(s)	615
TseFI	GTSAC	1 cut(s)	1048
TseI	GCWGC	2 cut(s)	301, 1014
Tsp45I	GTSAC	1 cut(s)	1048
TspDTI	ATGAA	2 cut(s)	572, 662
TspRI	CASTG	1 cut(s)	615
Van91I	CCANNNNNTGG	1 cut(s)	1109
VspI	ATTAAT	2 cut(s)	537, 770
XapI	RAATTY	2 cut(s)	596, 1220
XcmI	CCANNNNNNNNNTGG	2 cut(s)	704, 774
ZrmI	AGTACT	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.