AT4G32560

Coiled-coil domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0008812
Physical Location & Seq
Forward (+)
15713736 .. 15716659
2924 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G32560.4

Sequence Viewer

Length: 921 bp
ATGGAGAAAGACGATAACAGTGACAAGGTTTGTCTTTCAGTGAAGGAGAAATATACGTCAGAGCAGCCTGAGGAAATGGTGACAAATCTGAAGGCATCTGTAAGAGAATTGAGTGTGAAAGTGAAAGAACAGAATCAGAGAAAATGTGATGCTAAGGATAAGTTGCAGCAGTTGCGAGAAAGAATAAGCAAGGAAGTTGTTGATGTTTCAGTCCAGGAGTTGATACCGCTTCTTAGATCACTCAAGGAATTTGTGAAGGAGGAATCTGAAGTCAGGTCTCGTTGTAATGTTAAACGTTCTGCTTTAGAAGATGCAGTTCATGATTTGGAGGAGAGAGCTGGTAAGGGGCTTGATGGTGAGATTCAAGAGGAAGATTTAGATGGTTTGTTGGTTGTATCTTTAGATAATCTCACTTCAGCAAAGAAGGAGCTTGGAGCAACGCTAAGAGAGATAGTCTCTCTGAAGCGACAGATTGACGATGTGCCATGCCAATCTGAACTCCTCCAATATGAAAGAAGATTCTCAGAGCTGAATGTCTGTATTCAGGAGAAACTTCAACAAACTAGGAAGCTCTATGCAACATACAATGCTCTTTTAGAAATCAAAGATTTGATGCTTAAGGAGACATCATTATTGAATTCCATAGGTTCACAGTTTCAAGACGTGATTGGTACTCCTGCTGGCCGTGTGAAGCTTATTGATTCAATGGAAGGAGTCATGAAAGGAATCCAACAGAAGATTGGAAAAATACAACTTGGGCTTCAAGAAGAGCAGAGGCTCCGTGATGCTTCAAAAGAAAAGTATATAGCTGCAGCTGCAGAGCAAAGAAAATGCTACACTGTACTAAGAGCATACCAGGAGGAATGTACTAAGAATGAGAGGCTGAGAAGTCATATATCTGCCATGAACGAACACCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KOG2701

Protein Analysis

306

Amino Acids

35.03

Weight (kDa)

5.74

Isoelectric Point (pI)

50.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCDC93_CC PF09762 5 - 271 4.8e-45 CCDC93 coiled-coil domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 227
AclI AACGTT 1 cut(s) 295
AcoI YGGCCR 1 cut(s) 682
AcsI RAATTY 2 cut(s) 248, 637
AcuI CTGAAG 4 cut(s) 110, 288, 399, 482
AfaI GTAC 3 cut(s) 673, 843, 868
AflII CTTAAG 1 cut(s) 617
AgsI TTSAA 7 cut(s) 365, 557, 637, 659, 705, 764, 792
AjiI CACGTC 1 cut(s) 664
AjnI CCWGG 2 cut(s) 213, 855
AluBI AGCT 7 cut(s) 338, 430, 529, 571, 694, 809, 815
AluI AGCT 7 cut(s) 338, 430, 529, 571, 694, 809, 815
Alw26I GTCTC 3 cut(s) 282, 460, 617
AoxI GGCC 1 cut(s) 682
ApeKI GCWGC 5 cut(s) 64, 166, 809, 812, 815
ApoI RAATTY 2 cut(s) 248, 637
AsuHPI GGTGA 2 cut(s) 91, 368
AxyI CCTNAGG 1 cut(s) 69
BbvI GCAGC 5 cut(s) 76, 178, 796, 802, 824
BccI CCATC 2 cut(s) 347, 374
BceAI ACGGC 1 cut(s) 669
BciT130I CCWGG 2 cut(s) 215, 857
BcoDI GTCTC 3 cut(s) 282, 460, 617
BfaI CTAG 1 cut(s) 564
BfmI CTRYAG 2 cut(s) 810, 816
BfrI CTTAAG 1 cut(s) 617
BisI GCNGC 5 cut(s) 65, 167, 810, 813, 816
BlsI GCNGC 5 cut(s) 66, 168, 811, 814, 817
Bme1390I CCNGG 2 cut(s) 215, 857
BmgBI CACGTC 1 cut(s) 664
BmiI GGNNCC 1 cut(s) 779
BmrFI CCNGG 2 cut(s) 215, 857
BmsI GCATC 5 cut(s) 104, 139, 301, 603, 775
BplI GAGNNNNNCTC 2 cut(s) 440, 472
Bpu10I CCTNAGC 1 cut(s) 153
BpuEI CTTGAG 1 cut(s) 227
BsaI GGTCTC 1 cut(s) 282
Bse21I CCTNAGG 1 cut(s) 69
BseBI CCWGG 2 cut(s) 215, 857
BseMII CTCAG 3 cut(s) 60, 537, 875
BseRI GAGGAG 2 cut(s) 344, 491
BseXI GCAGC 5 cut(s) 76, 178, 796, 802, 824
BshFI GGCC 1 cut(s) 684
BsmAI GTCTC 3 cut(s) 282, 460, 617
BsnI GGCC 1 cut(s) 684
Bso31I GGTCTC 1 cut(s) 282
Bsp143I GATC 1 cut(s) 236
BspACI CCGC 1 cut(s) 227
BspANI GGCC 1 cut(s) 684
BspCNI CTCAG 3 cut(s) 61, 536, 876
BspHI TCATGA 2 cut(s) 319, 717
BspLI GGNNCC 1 cut(s) 779
BspMAI CTGCAG 2 cut(s) 814, 820
BspQI GCTCTTC 1 cut(s) 762
BspTI CTTAAG 1 cut(s) 617
BspTNI GGTCTC 1 cut(s) 282
BssMI GATC 1 cut(s) 236
Bst2UI CCWGG 2 cut(s) 215, 857
Bst4CI ACNGT 3 cut(s) 20, 654, 841
Bst6I CTCTTC 1 cut(s) 762
BstAFI CTTAAG 1 cut(s) 617
BstAPI GCANNNNNTGC 1 cut(s) 172
BstC8I GCNNGC 1 cut(s) 682
BstDEI CTNAG 8 cut(s) 69, 153, 233, 443, 523, 845, 870, 884
BstKTI GATC 1 cut(s) 239
BstMAI GTCTC 3 cut(s) 282, 460, 617
BstMBI GATC 1 cut(s) 236
BstMWI GCNNNNNNNGC 2 cut(s) 172, 815
BstNI CCWGG 2 cut(s) 215, 857
BstSCI CCNGG 2 cut(s) 213, 855
BstSFI CTRYAG 2 cut(s) 810, 816
BstV1I GCAGC 5 cut(s) 76, 178, 796, 802, 824
Bsu36I CCTNAGG 1 cut(s) 69
BsuRI GGCC 1 cut(s) 684
BtrI CACGTC 1 cut(s) 664
BtsIMutI CAGTG 3 cut(s) 25, 45, 837
Cac8I GCNNGC 1 cut(s) 682
CciI TCATGA 2 cut(s) 319, 717
Csp6I GTAC 3 cut(s) 672, 842, 867
CviAII CATG 4 cut(s) 320, 486, 718, 904
CviQI GTAC 3 cut(s) 672, 842, 867
DdeI CTNAG 8 cut(s) 69, 153, 233, 443, 523, 845, 870, 884
DpnI GATC 1 cut(s) 238
DpnII GATC 1 cut(s) 236
EaeI YGGCCR 1 cut(s) 682
Eam1104I CTCTTC 1 cut(s) 762
EarI CTCTTC 1 cut(s) 762
Eco31I GGTCTC 1 cut(s) 282
Eco57I CTGAAG 4 cut(s) 110, 288, 399, 482
Eco81I CCTNAGG 1 cut(s) 69
EcoRI GAATTC 1 cut(s) 637
EcoRII CCWGG 2 cut(s) 213, 855
FaeI CATG 4 cut(s) 323, 489, 721, 907
FatI CATG 4 cut(s) 319, 485, 717, 903
Fnu4HI GCNGC 5 cut(s) 65, 167, 810, 813, 816
Fsp4HI GCNGC 5 cut(s) 65, 167, 810, 813, 816
FspBI CTAG 1 cut(s) 564
GluI GCNGC 5 cut(s) 65, 167, 810, 813, 816
HaeIII GGCC 1 cut(s) 684
Hin1II CATG 4 cut(s) 323, 489, 721, 907
HindIII AAGCTT 1 cut(s) 692
HinfI GANTC 7 cut(s) 133, 263, 361, 519, 701, 714, 726
HphI GGTGA 2 cut(s) 91, 368
Hpy166II GTNNAC 1 cut(s) 650
Hpy188I TCNGA 8 cut(s) 61, 90, 138, 268, 462, 496, 526, 920
Hpy188III TCNNGA 6 cut(s) 320, 365, 545, 659, 718, 764
Hpy8I GTNNAC 1 cut(s) 650
HpyAV CCTTC 5 cut(s) 37, 85, 250, 418, 704
HpyCH4III ACNGT 3 cut(s) 20, 654, 841
HpyCH4IV ACGT 3 cut(s) 56, 295, 663
HpyCH4V TGCA 5 cut(s) 166, 314, 578, 812, 818
HpyF10VI GCNNNNNNNGC 2 cut(s) 172, 815
HpyF3I CTNAG 8 cut(s) 69, 153, 233, 443, 523, 845, 870, 884
HpySE526I ACGT 3 cut(s) 56, 295, 663
Hsp92II CATG 4 cut(s) 323, 489, 721, 907
Kzo9I GATC 1 cut(s) 236
LguI GCTCTTC 1 cut(s) 762
LmnI GCTCC 3 cut(s) 427, 434, 783
Lsp1109I GCAGC 5 cut(s) 76, 178, 796, 802, 824
LweI GCATC 5 cut(s) 104, 139, 301, 603, 775
MaeI CTAG 1 cut(s) 564
MaeII ACGT 3 cut(s) 56, 295, 663
MaeIII GTNAC 2 cut(s) 20, 79
MalI GATC 1 cut(s) 238
MboI GATC 1 cut(s) 236
MboII GAAGA 5 cut(s) 320, 383, 528, 748, 779
MluCI AATT 3 cut(s) 107, 248, 637
MlyI GAGTC 1 cut(s) 723
MmeI TCCRAC 1 cut(s) 754
MnlI CCTC 8 cut(s) 64, 253, 322, 361, 512, 768, 853, 873
MseI TTAA 2 cut(s) 291, 618
MspA1I CMGCKG 1 cut(s) 815
MspCI CTTAAG 1 cut(s) 617
MspR9I CCNGG 2 cut(s) 215, 857
MvaI CCWGG 2 cut(s) 215, 857
MwoI GCNNNNNNNGC 2 cut(s) 172, 815
NdeII GATC 1 cut(s) 236
NlaIII CATG 4 cut(s) 323, 489, 721, 907
NlaIV GGNNCC 1 cut(s) 779
NmuCI GTSAC 2 cut(s) 20, 79
PagI TCATGA 2 cut(s) 319, 717
PciSI GCTCTTC 1 cut(s) 762
PfeI GAWTC 6 cut(s) 133, 263, 361, 519, 701, 726
PfoI TCCNGGA 1 cut(s) 213
PkrI GCNGC 5 cut(s) 66, 168, 811, 814, 817
PleI GAGTC 1 cut(s) 722
PpsI GAGTC 1 cut(s) 722
Psp1406I AACGTT 1 cut(s) 295
Psp6I CCWGG 2 cut(s) 213, 855
PspGI CCWGG 2 cut(s) 213, 855
PspN4I GGNNCC 1 cut(s) 779
PstI CTGCAG 2 cut(s) 814, 820
PvuII CAGCTG 1 cut(s) 815
RsaI GTAC 3 cut(s) 673, 843, 868
RsaNI GTAC 3 cut(s) 672, 842, 867
SapI GCTCTTC 1 cut(s) 762
SaqAI TTAA 2 cut(s) 291, 618
SatI GCNGC 5 cut(s) 65, 167, 810, 813, 816
Sau3AI GATC 1 cut(s) 236
SchI GAGTC 1 cut(s) 723
ScrFI CCNGG 2 cut(s) 215, 857
SfaNI GCATC 5 cut(s) 104, 139, 301, 603, 775
SfcI CTRYAG 2 cut(s) 810, 816
SmlI CTYRAG 2 cut(s) 242, 617
SmoI CTYRAG 2 cut(s) 242, 617
Sse9I AATT 3 cut(s) 107, 248, 637
SsiI CCGC 1 cut(s) 227
SspMI CTAG 1 cut(s) 564
StyD4I CCNGG 2 cut(s) 213, 855
TaaI ACNGT 3 cut(s) 20, 654, 841
TaiI ACGT 3 cut(s) 59, 298, 666
TasI AATT 3 cut(s) 107, 248, 637
TatI WGTACW 2 cut(s) 841, 866
TfiI GAWTC 6 cut(s) 133, 263, 361, 519, 701, 726
Tru1I TTAA 2 cut(s) 291, 618
Tru9I TTAA 2 cut(s) 291, 618
TscAI CASTG 3 cut(s) 25, 45, 844
TseFI GTSAC 2 cut(s) 20, 79
TseI GCWGC 5 cut(s) 64, 166, 809, 812, 815
Tsp45I GTSAC 2 cut(s) 20, 79
TspDTI ATGAA 4 cut(s) 308, 525, 734, 920
TspGWI ACGGA 1 cut(s) 770
TspRI CASTG 3 cut(s) 25, 45, 844
Vha464I CTTAAG 1 cut(s) 617
XapI RAATTY 2 cut(s) 248, 637
XcmI CCANNNNNNNNNTGG 1 cut(s) 737
XspI CTAG 1 cut(s) 564
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.