MD15G1116400.v1.1

Coiled-coil domain-containing protein 93

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0008812
Physical Location & Seq
Reverse (-)
8217769 .. 8221171
3403 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1116400.v1.1.491

Sequence Viewer

Length: 807 bp
ATGGCAGAAAACAATCTCAACGAATTGATTGAGAAGAAGTTTAAATTCACGAACGAATTGCAAAGTTTGAGAGAGAAGATCGAAAAGGAAGGCGTTGAAGCTGCGGTTGAAAAGTTGGTATCGCTTAAGCAGTCACTGAAGGAGCAGGAAAGGCAAGAGCTTGAAATCCAGTTTCTGAGCAATTCCGGATTGGAAGCTGAAGTTTGTAGATTGGAGGACCAAATAGCAAATGGGGTTGATGGTGAGGATGTCCCTGATGAACTGAATTGTTTGTTGAGTGAAGCTCTGGTGAAAATCGATTTGGCGAAAATGGAACTTGCAGCTAGATTAAGGGCACTGTTGGCAGTGCAGCGCCGGATTGATGAGGTTCCTTCGCAGTCCGAACTAGTCCAGTATGAATGCCGGTTGTCAGAATTGAATGCTCAAATTCAGGGAAAACTTCAACAAACTCGGAAGTACTATGCCACTTATAATGCACTTTTGGAGATCAAGGAATTGATACTAAAGGAAACATCCTTGTTAAATTCAATAAGTTCACAGTTTCAAGAAGCATCCTCTACCACTGACGGTCGCATGAAACTTGTCAACTCCATGGAGGGGATCATAAAGGGCAGTCAACAGAAACTTCTAAAGGTACAGCTTGGGCTTCAAGAAGAGCAGAAAGTTTGTGATTCTCTCAAGGAAAAGTATGTTGCAGCAAATGCAAAGCAAAGGCACTGTTATTCACTCTTAAAAGCTTTTCAGGAAGAATGTGCAAAGAATGAGGTACTCCGAAGACATTCTGTTTCGAACATCTCCGAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KOG2701

Protein Analysis

269

Amino Acids

30.49

Weight (kDa)

5.21

Isoelectric Point (pI)

54.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCDC93_CC PF09762 4 - 257 1.6e-42 CCDC93 coiled-coil domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 471
AccIII TCCGGA 1 cut(s) 185
AciI CCGC 1 cut(s) 104
AclWI GGATC 1 cut(s) 608
AcsI RAATTY 3 cut(s) 44, 426, 523
AcuI CTGAAG 2 cut(s) 158, 219
AfaI GTAC 3 cut(s) 458, 636, 768
AfiI CCNNNNNNNGG 1 cut(s) 597
AflII CTTAAG 1 cut(s) 125
AgsI TTSAA 8 cut(s) 98, 110, 164, 418, 443, 528, 545, 650
AhlI ACTAGT 1 cut(s) 385
AjuI GAANNNNNNNTTGG 2 cut(s) 284, 316
AluBI AGCT 7 cut(s) 101, 160, 197, 284, 323, 640, 737
AluI AGCT 7 cut(s) 101, 160, 197, 284, 323, 640, 737
AlwI GGATC 1 cut(s) 608
AlwNI CAGNNNCTG 2 cut(s) 136, 175
Aor13HI TCCGGA 1 cut(s) 185
ApeKI GCWGC 4 cut(s) 101, 320, 349, 695
ApoI RAATTY 3 cut(s) 44, 426, 523
Asp700I GAANNNNTTC 1 cut(s) 778
AspLEI GCGC 1 cut(s) 354
AspS9I GGNCC 1 cut(s) 217
AsuHPI GGTGA 2 cut(s) 254, 301
AsuII TTCGAA 1 cut(s) 788
AvaII GGWCC 1 cut(s) 217
BaeGI GKGCMC 1 cut(s) 337
BbsI GAAGAC 1 cut(s) 781
BbvI GCAGC 4 cut(s) 88, 332, 361, 707
BccI CCATC 1 cut(s) 233
BcgI CGANNNNNNTGC 2 cut(s) 40, 74
BcuI ACTAGT 1 cut(s) 385
BfaI CTAG 2 cut(s) 324, 386
BfoI RGCGCY 1 cut(s) 355
BfrI CTTAAG 1 cut(s) 125
BisI GCNGC 4 cut(s) 102, 321, 350, 696
BlsI GCNGC 4 cut(s) 103, 322, 351, 697
BmcAI AGTACT 1 cut(s) 458
Bme18I GGWCC 1 cut(s) 217
BmgT120I GGNCC 1 cut(s) 217
BmiI GGNNCC 1 cut(s) 369
BmsI GCATC 1 cut(s) 560
BpiI GAAGAC 1 cut(s) 781
BplI GAGNNNNNCTC 2 cut(s) 268, 300
Bpu14I TTCGAA 1 cut(s) 788
BpuEI CTTGAG 1 cut(s) 662
Bsa29I ATCGAT 1 cut(s) 297
BsaJI CCNNGG 1 cut(s) 591
BsaWI WCCGGW 1 cut(s) 185
Bsc4I CCNNNNNNNGG 1 cut(s) 597
Bse118I RCCGGY 1 cut(s) 402
Bse1I ACTGG 2 cut(s) 169, 391
BseAI TCCGGA 1 cut(s) 185
BseCI ATCGAT 1 cut(s) 297
BseDI CCNNGG 1 cut(s) 591
BseGI GGATG 3 cut(s) 253, 512, 551
BseLI CCNNNNNNNGG 1 cut(s) 597
BseMII CTCAG 1 cut(s) 167
BseNI ACTGG 2 cut(s) 169, 391
BseSI GKGCMC 1 cut(s) 337
BseXI GCAGC 4 cut(s) 88, 332, 361, 707
BsgI GTGCAG 1 cut(s) 368
Bsh1285I CGRYCG 1 cut(s) 571
BshVI ATCGAT 1 cut(s) 297
BsiEI CGRYCG 1 cut(s) 571
BsiSI CCGG 3 cut(s) 186, 355, 403
BslFI GGGAC 1 cut(s) 236
BslI CCNNNNNNNGG 1 cut(s) 597
BsmFI GGGAC 1 cut(s) 236
BsmI GAATGC 2 cut(s) 404, 424
Bsp119I TTCGAA 1 cut(s) 788
Bsp1286I GDGCHC 1 cut(s) 337
Bsp13I TCCGGA 1 cut(s) 185
Bsp143I GATC 3 cut(s) 78, 486, 600
Bsp19I CCATGG 1 cut(s) 591
BspACI CCGC 1 cut(s) 104
BspCNI CTCAG 1 cut(s) 168
BspDI ATCGAT 1 cut(s) 297
BspEI TCCGGA 1 cut(s) 185
BspLI GGNNCC 1 cut(s) 369
BspPI GGATC 1 cut(s) 608
BspQI GCTCTTC 1 cut(s) 648
BspT104I TTCGAA 1 cut(s) 788
BspTI CTTAAG 1 cut(s) 125
BsrFI RCCGGY 1 cut(s) 402
BsrI ACTGG 2 cut(s) 169, 391
BssAI RCCGGY 1 cut(s) 402
BssECI CCNNGG 1 cut(s) 591
BssMI GATC 3 cut(s) 78, 486, 600
BssT1I CCWWGG 1 cut(s) 591
Bst4CI ACNGT 4 cut(s) 339, 540, 569, 719
Bst6I CTCTTC 1 cut(s) 648
BstAFI CTTAAG 1 cut(s) 125
BstAPI GCANNNNNTGC 1 cut(s) 701
BstBI TTCGAA 1 cut(s) 788
BstDEI CTNAG 1 cut(s) 176
BstDSI CCRYGG 1 cut(s) 591
BstF5I GGATG 3 cut(s) 253, 512, 551
BstH2I RGCGCY 1 cut(s) 355
BstHHI GCGC 1 cut(s) 354
BstKTI GATC 3 cut(s) 81, 489, 603
BstMBI GATC 3 cut(s) 78, 486, 600
BstMCI CGRYCG 1 cut(s) 571
BstMWI GCNNNNNNNGC 3 cut(s) 151, 341, 701
BstSLI GKGCMC 1 cut(s) 337
BstV1I GCAGC 4 cut(s) 88, 332, 361, 707
BstV2I GAAGAC 1 cut(s) 781
Bsu15I ATCGAT 1 cut(s) 297
BsuTUI ATCGAT 1 cut(s) 297
BtgI CCRYGG 1 cut(s) 591
BtsCI GGATG 3 cut(s) 253, 512, 551
BtsI GCAGTG 1 cut(s) 351
BtsIMutI CAGTG 5 cut(s) 134, 335, 351, 561, 715
CaiI CAGNNNCTG 2 cut(s) 136, 175
CfoI GCGC 1 cut(s) 354
Cfr10I RCCGGY 1 cut(s) 402
Cfr13I GGNCC 1 cut(s) 217
ClaI ATCGAT 1 cut(s) 297
Csp6I GTAC 3 cut(s) 457, 635, 767
CviAII CATG 2 cut(s) 574, 592
CviJI RGCY 8 cut(s) 101, 160, 197, 284, 323, 640, 646, 737
CviKI_1 RGCY 8 cut(s) 101, 160, 197, 284, 323, 640, 646, 737
CviQI GTAC 3 cut(s) 457, 635, 767
DdeI CTNAG 1 cut(s) 176
DpnI GATC 3 cut(s) 80, 488, 602
DpnII GATC 3 cut(s) 78, 486, 600
DraI TTTAAA 1 cut(s) 43
Eam1104I CTCTTC 1 cut(s) 648
EarI CTCTTC 1 cut(s) 648
Eco130I CCWWGG 1 cut(s) 591
Eco47I GGWCC 1 cut(s) 217
Eco57I CTGAAG 2 cut(s) 158, 219
EcoT14I CCWWGG 1 cut(s) 591
ErhI CCWWGG 1 cut(s) 591
FaeI CATG 2 cut(s) 577, 595
FaiI YATR 7 cut(s) 396, 462, 471, 575, 593, 605, 690
FaqI GGGAC 1 cut(s) 236
FatI CATG 2 cut(s) 573, 591
Fnu4HI GCNGC 4 cut(s) 102, 321, 350, 696
FokI GGATG 3 cut(s) 260, 499, 538
Fsp4HI GCNGC 4 cut(s) 102, 321, 350, 696
FspBI CTAG 2 cut(s) 324, 386
GlaI GCGC 1 cut(s) 353
GluI GCNGC 4 cut(s) 102, 321, 350, 696
HaeII RGCGCY 1 cut(s) 355
HapII CCGG 3 cut(s) 186, 355, 403
HhaI GCGC 1 cut(s) 354
Hin1II CATG 2 cut(s) 577, 595
Hin6I GCGC 1 cut(s) 352
HinP1I GCGC 1 cut(s) 352
HincII GTYRAC 2 cut(s) 586, 617
HindII GTYRAC 2 cut(s) 586, 617
HindIII AAGCTT 1 cut(s) 735
HinfI GANTC 1 cut(s) 671
HpaII CCGG 3 cut(s) 186, 355, 403
HphI GGTGA 2 cut(s) 254, 301
Hpy166II GTNNAC 3 cut(s) 536, 586, 617
Hpy188I TCNGA 6 cut(s) 177, 382, 412, 453, 773, 799
Hpy188III TCNNGA 5 cut(s) 49, 186, 545, 650, 743
Hpy8I GTNNAC 3 cut(s) 536, 586, 617
HpyAV CCTTC 3 cut(s) 83, 133, 381
HpyCH4III ACNGT 4 cut(s) 339, 540, 569, 719
HpyCH4V TGCA 7 cut(s) 61, 320, 349, 476, 695, 704, 755
HpyF10VI GCNNNNNNNGC 3 cut(s) 151, 341, 701
HpyF3I CTNAG 1 cut(s) 176
Hsp92II CATG 2 cut(s) 577, 595
HspAI GCGC 1 cut(s) 352
Kpn2I TCCGGA 1 cut(s) 185
Kzo9I GATC 3 cut(s) 78, 486, 600
LguI GCTCTTC 1 cut(s) 648
LmnI GCTCC 1 cut(s) 142
Lsp1109I GCAGC 4 cut(s) 88, 332, 361, 707
LweI GCATC 1 cut(s) 560
MaeI CTAG 2 cut(s) 324, 386
MaeIII GTNAC 1 cut(s) 132
MalI GATC 3 cut(s) 80, 488, 602
MboI GATC 3 cut(s) 78, 486, 600
MboII GAAGA 5 cut(s) 46, 88, 665, 758, 786
MhlI GDGCHC 1 cut(s) 337
MluCI AATT 9 cut(s) 23, 44, 56, 181, 265, 413, 426, 494, 523
MnlI CCTC 6 cut(s) 208, 238, 358, 565, 589, 757
MroI TCCGGA 1 cut(s) 185
MroXI GAANNNNTTC 1 cut(s) 778
MseI TTAA 5 cut(s) 42, 126, 329, 521, 731
MspCI CTTAAG 1 cut(s) 125
MspI CCGG 3 cut(s) 186, 355, 403
Mva1269I GAATGC 2 cut(s) 404, 424
MwoI GCNNNNNNNGC 3 cut(s) 151, 341, 701
NcoI CCATGG 1 cut(s) 591
NdeII GATC 3 cut(s) 78, 486, 600
NlaIII CATG 2 cut(s) 577, 595
NlaIV GGNNCC 1 cut(s) 369
NmuCI GTSAC 1 cut(s) 132
NspV TTCGAA 1 cut(s) 788
PciSI GCTCTTC 1 cut(s) 648
PctI GAATGC 2 cut(s) 404, 424
PdmI GAANNNNTTC 1 cut(s) 778
PfeI GAWTC 1 cut(s) 671
PkrI GCNGC 4 cut(s) 103, 322, 351, 697
PsiI TTATAA 1 cut(s) 471
PspN4I GGNNCC 1 cut(s) 369
PspPI GGNCC 1 cut(s) 217
PstNI CAGNNNCTG 2 cut(s) 136, 175
RsaI GTAC 3 cut(s) 458, 636, 768
RsaNI GTAC 3 cut(s) 457, 635, 767
SapI GCTCTTC 1 cut(s) 648
SaqAI TTAA 5 cut(s) 42, 126, 329, 521, 731
SatI GCNGC 4 cut(s) 102, 321, 350, 696
Sau3AI GATC 3 cut(s) 78, 486, 600
Sau96I GGNCC 1 cut(s) 217
ScaI AGTACT 1 cut(s) 458
SduI GDGCHC 1 cut(s) 337
SfaNI GCATC 1 cut(s) 560
SfuI TTCGAA 1 cut(s) 788
SinI GGWCC 1 cut(s) 217
SmlI CTYRAG 2 cut(s) 125, 677
SmoI CTYRAG 2 cut(s) 125, 677
SpeI ACTAGT 1 cut(s) 385
Sse9I AATT 9 cut(s) 23, 44, 56, 181, 265, 413, 426, 494, 523
SsiI CCGC 1 cut(s) 104
SspMI CTAG 2 cut(s) 324, 386
StyI CCWWGG 1 cut(s) 591
TaaI ACNGT 4 cut(s) 339, 540, 569, 719
TaqI TCGA 3 cut(s) 81, 297, 788
TasI AATT 9 cut(s) 23, 44, 56, 181, 265, 413, 426, 494, 523
TatI WGTACW 1 cut(s) 456
TfiI GAWTC 1 cut(s) 671
Tru1I TTAA 5 cut(s) 42, 126, 329, 521, 731
Tru9I TTAA 5 cut(s) 42, 126, 329, 521, 731
TscAI CASTG 5 cut(s) 141, 342, 351, 568, 722
TseFI GTSAC 1 cut(s) 132
TseI GCWGC 4 cut(s) 101, 320, 349, 695
Tsp45I GTSAC 1 cut(s) 132
TspDTI ATGAA 3 cut(s) 273, 411, 590
TspRI CASTG 5 cut(s) 141, 342, 351, 568, 722
Vha464I CTTAAG 1 cut(s) 125
VpaK11BI GGWCC 1 cut(s) 217
XapI RAATTY 3 cut(s) 44, 426, 523
XcmI CCANNNNNNNNNTGG 1 cut(s) 227
XmnI GAANNNNTTC 1 cut(s) 778
XspI CTAG 2 cut(s) 324, 386
ZrmI AGTACT 1 cut(s) 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.