Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008812

Physical Location & Seq

Genomic Coordinates Reverse (-)

38967780 .. 38971387

Gene Structure 3608 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G467900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGTCAGAAGACAATCTGAATGAATTGATTGAGAGGAAAGCGAATGTTACGAATGAATTGCAGAGTTTAAGAGAGAAAATCGATAAGGAAGGAGATAAAGCTGCGGTGCACAAGTTGATATCGCTGAGGCAGGCATTGAAGGAGCTGGAAAGGCAAGAGCTTGAAATCCAGTCTTCTAGTAATTCTGAATTGGATGCTGAGGTTCGTAGATTGGAGGACCAAATAACAAATGGGTATGATGGCCAGACTGTCTCTGATGAATTGGATCGTCTGTTGAGTGAATCAGTGGAGAAAATTGATTCAGCTAAAGGGGAACTTGCAGCTAGATCAAGGGCAGTGCTGGCAGTGCAGCGACAGATTGATGATGTTCCATCTCAATCAGAACTCATCCAGTATGAACGCCGGTTTTCAGAACTGAATGCTCAAATTCAGGGAAAACTTCAACAAACTCGTAAATTCTATGCCACATATAATGCACTTTTGGAGATCAAAGAATTGATGCTAAAGGAAACATCTTTATTGAATTCAATAAGTTCACAGTTTCAAGATGCAATCACTAGCACTGATGGTCGCATGAAACTTATTAACTCCATGGAGGGAATCATAAAGGGCAGTCAACAGAAGCTACTAAAGGTACAACTTGGACTTAAAGAAGAGCAAAAAGTTTGTGATGCTCTGAAGGCGAAGCATGTTGCAGCAACTGCAGAGCAAAGGCACTGCTATTCTCTCTTAAAAGCTTTCCAGGAGGAATGTACAAAGAATGAGGTACTCAGAAGAGGTGCCGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KOG2701

Protein Analysis

263

Amino Acids

29.68

Weight (kDa)

5.52

Isoelectric Point (pI)

52.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32560 AT4G32560 AT4G32560 AT4G32560
fragaria_vesca	FvH4_2g30000 FvH4_2g30000
malus_domestica	MD08G1138500.v1.1 MD08G1138600.v1.1 MD15G1116400.v1.1
prunus_persica	Prupe.1G467900_v2.0.a1
pyrus_communis	pycom08g11670 pycom15g10490
rosa_chinensis	RchiOBHm_Chr6g0312911
rosa_laevigata	RLG00000010289
rosa_multiflora	Rmu_sc0008049.1_g000027
rosa_roxburghii	Rroxscaffold_7G00156340
rosa_rugosa	Rorug06G0400300 Rorug06G0400400
rosa_samantha	Rh6AG517600 Rh6BG529300 Rh6CG533700 Rh6DG520400
rosa_wichuraiana	Rw6G044970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	779
AciI	CCGC	2 cut(s)	104, 783
AclWI	GGATC	1 cut(s)	273
AcoI	YGGCCR	1 cut(s)	241
AcsI	RAATTY	3 cut(s)	426, 455, 523
AcuI	CTGAAG	1 cut(s)	698
AfaI	GTAC	3 cut(s)	636, 754, 768
AgsI	TTSAA	6 cut(s)	139, 164, 443, 523, 528, 545
AjnI	CCWGG	1 cut(s)	741
AluBI	AGCT	7 cut(s)	101, 145, 160, 305, 323, 625, 737
AluI	AGCT	7 cut(s)	101, 145, 160, 305, 323, 625, 737
Alw21I	GWGCWC	1 cut(s)	111
Alw26I	GTCTC	1 cut(s)	256
Alw44I	GTGCAC	1 cut(s)	107
AlwI	GGATC	1 cut(s)	273
AlwNI	CAGNNNCTG	1 cut(s)	701
AoxI	GGCC	1 cut(s)	241
ApaLI	GTGCAC	1 cut(s)	107
ApeKI	GCWGC	4 cut(s)	101, 320, 349, 695
ApoI	RAATTY	3 cut(s)	426, 455, 523
AspS9I	GGNCC	1 cut(s)	217
AvaII	GGWCC	1 cut(s)	217
BaeGI	GKGCMC	1 cut(s)	111
BalI	TGGCCA	1 cut(s)	243
BanI	GGYRCC	1 cut(s)	779
BbsI	GAAGAC	2 cut(s)	15, 165
Bbv12I	GWGCWC	1 cut(s)	111
BbvCI	CCTCAGC	2 cut(s)	125, 198
BbvI	GCAGC	4 cut(s)	88, 332, 361, 707
BccI	CCATC	3 cut(s)	233, 379, 560
BcgI	CGANNNNNNTGC	2 cut(s)	40, 74
BciT130I	CCWGG	1 cut(s)	743
BcoDI	GTCTC	1 cut(s)	256
BfaI	CTAG	3 cut(s)	177, 324, 558
BfmI	CTRYAG	1 cut(s)	702
BisI	GCNGC	5 cut(s)	102, 321, 350, 696, 783
BlsI	GCNGC	5 cut(s)	103, 322, 351, 697, 784
Bme1390I	CCNGG	1 cut(s)	743
Bme18I	GGWCC	1 cut(s)	217
BmgT120I	GGNCC	1 cut(s)	217
BmiI	GGNNCC	1 cut(s)	781
BmrFI	CCNGG	1 cut(s)	743
BmsI	GCATC	4 cut(s)	184, 489, 538, 661
BpiI	GAAGAC	2 cut(s)	15, 165
Bpu10I	CCTNAGC	2 cut(s)	125, 198
Bsa29I	ATCGAT	1 cut(s)	81
BsaJI	CCNNGG	1 cut(s)	591
Bse118I	RCCGGY	1 cut(s)	402
Bse1I	ACTGG	2 cut(s)	169, 391
BseBI	CCWGG	1 cut(s)	743
BseCI	ATCGAT	1 cut(s)	81
BseDI	CCNNGG	1 cut(s)	591
BseGI	GGATG	2 cut(s)	199, 387
BseMII	CTCAG	3 cut(s)	116, 189, 784
BseNI	ACTGG	2 cut(s)	169, 391
BseSI	GKGCMC	1 cut(s)	111
BseXI	GCAGC	4 cut(s)	88, 332, 361, 707
BsgI	GTGCAG	1 cut(s)	368
BshFI	GGCC	1 cut(s)	243
BshNI	GGYRCC	1 cut(s)	779
BshVI	ATCGAT	1 cut(s)	81
BsiHKAI	GWGCWC	1 cut(s)	111
BsiSI	CCGG	1 cut(s)	403
BsmAI	GTCTC	1 cut(s)	256
BsmI	GAATGC	1 cut(s)	424
BsnI	GGCC	1 cut(s)	243
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp1407I	TGTACA	1 cut(s)	752
Bsp143I	GATC	3 cut(s)	265, 326, 486
Bsp19I	CCATGG	1 cut(s)	591
BspACI	CCGC	2 cut(s)	104, 783
BspANI	GGCC	1 cut(s)	243
BspCNI	CTCAG	3 cut(s)	117, 190, 783
BspDI	ATCGAT	1 cut(s)	81
BspLI	GGNNCC	1 cut(s)	781
BspMAI	CTGCAG	1 cut(s)	706
BspPI	GGATC	1 cut(s)	273
BspQI	GCTCTTC	1 cut(s)	648
BspT107I	GGYRCC	1 cut(s)	779
BsrFI	RCCGGY	1 cut(s)	402
BsrGI	TGTACA	1 cut(s)	752
BsrI	ACTGG	2 cut(s)	169, 391
BssAI	RCCGGY	1 cut(s)	402
BssECI	CCNNGG	1 cut(s)	591
BssMI	GATC	3 cut(s)	265, 326, 486
BssT1I	CCWWGG	1 cut(s)	591
Bst2UI	CCWGG	1 cut(s)	743
Bst4CI	ACNGT	2 cut(s)	250, 540
Bst6I	CTCTTC	2 cut(s)	648, 769
BstAPI	GCANNNNNTGC	1 cut(s)	701
BstAUI	TGTACA	1 cut(s)	752
BstC8I	GCNNGC	2 cut(s)	132, 342
BstDEI	CTNAG	4 cut(s)	125, 198, 770, 786
BstDSI	CCRYGG	1 cut(s)	591
BstF5I	GGATG	2 cut(s)	199, 387
BstKTI	GATC	3 cut(s)	268, 329, 489
BstMAI	GTCTC	1 cut(s)	256
BstMBI	GATC	3 cut(s)	265, 326, 486
BstMWI	GCNNNNNNNGC	5 cut(s)	151, 341, 346, 680, 701
BstNI	CCWGG	1 cut(s)	743
BstNSI	RCATGY	1 cut(s)	692
BstSCI	CCNGG	1 cut(s)	741
BstSFI	CTRYAG	1 cut(s)	702
BstSLI	GKGCMC	1 cut(s)	111
BstV1I	GCAGC	4 cut(s)	88, 332, 361, 707
BstV2I	GAAGAC	2 cut(s)	15, 165
Bsu15I	ATCGAT	1 cut(s)	81
BsuRI	GGCC	1 cut(s)	243
BsuTUI	ATCGAT	1 cut(s)	81
BtgI	CCRYGG	1 cut(s)	591
BtsCI	GGATG	2 cut(s)	199, 387
BtsI	GCAGTG	3 cut(s)	342, 351, 715
BtsIMutI	CAGTG	5 cut(s)	291, 342, 351, 561, 715
Cac8I	GCNNGC	2 cut(s)	132, 342
CaiI	CAGNNNCTG	1 cut(s)	701
Cfr10I	RCCGGY	1 cut(s)	402
Cfr13I	GGNCC	1 cut(s)	217
ClaI	ATCGAT	1 cut(s)	81
Csp6I	GTAC	3 cut(s)	635, 753, 767
CviAII	CATG	3 cut(s)	574, 592, 689
CviJI	RGCY	8 cut(s)	101, 145, 160, 243, 305, 323, 625, 737
CviKI_1	RGCY	8 cut(s)	101, 145, 160, 243, 305, 323, 625, 737
CviQI	GTAC	3 cut(s)	635, 753, 767
DdeI	CTNAG	4 cut(s)	125, 198, 770, 786
DpnI	GATC	3 cut(s)	267, 328, 488
DpnII	GATC	3 cut(s)	265, 326, 486
EaeI	YGGCCR	1 cut(s)	241
Eam1104I	CTCTTC	2 cut(s)	648, 769
EarI	CTCTTC	2 cut(s)	648, 769
Eco130I	CCWWGG	1 cut(s)	591
Eco32I	GATATC	1 cut(s)	120
Eco47I	GGWCC	1 cut(s)	217
Eco57I	CTGAAG	1 cut(s)	698
EcoRI	GAATTC	1 cut(s)	523
EcoRII	CCWGG	1 cut(s)	741
EcoRV	GATATC	1 cut(s)	120
EcoT14I	CCWWGG	1 cut(s)	591
ErhI	CCWWGG	1 cut(s)	591
FaeI	CATG	3 cut(s)	577, 595, 692
FaiI	YATR	9 cut(s)	237, 396, 462, 469, 471, 575, 593, 605, 690
FalI	AAGNNNNNCTT	2 cut(s)	300, 332
FatI	CATG	3 cut(s)	573, 591, 688
Fnu4HI	GCNGC	5 cut(s)	102, 321, 350, 696, 783
FokI	GGATG	2 cut(s)	206, 374
Fsp4HI	GCNGC	5 cut(s)	102, 321, 350, 696, 783
FspBI	CTAG	3 cut(s)	177, 324, 558
GluI	GCNGC	5 cut(s)	102, 321, 350, 696, 783
HaeIII	GGCC	1 cut(s)	243
HapII	CCGG	1 cut(s)	403
Hin1II	CATG	3 cut(s)	577, 595, 692
HincII	GTYRAC	1 cut(s)	617
HindII	GTYRAC	1 cut(s)	617
HindIII	AAGCTT	1 cut(s)	735
HinfI	GANTC	3 cut(s)	281, 299, 600
HpaII	CCGG	1 cut(s)	403
Hpy166II	GTNNAC	3 cut(s)	109, 536, 617
Hpy188I	TCNGA	8 cut(s)	7, 18, 187, 256, 382, 412, 678, 773
Hpy188III	TCNNGA	1 cut(s)	545
Hpy8I	GTNNAC	3 cut(s)	109, 536, 617
HpyAV	CCTTC	3 cut(s)	83, 133, 673
HpyCH4III	ACNGT	2 cut(s)	250, 540
HpyCH4V	TGCA	8 cut(s)	61, 109, 320, 349, 476, 551, 695, 704
HpyF10VI	GCNNNNNNNGC	5 cut(s)	151, 341, 346, 680, 701
HpyF3I	CTNAG	4 cut(s)	125, 198, 770, 786
Hsp92II	CATG	3 cut(s)	577, 595, 692
Kzo9I	GATC	3 cut(s)	265, 326, 486
LguI	GCTCTTC	1 cut(s)	648
LmnI	GCTCC	1 cut(s)	142
Lsp1109I	GCAGC	4 cut(s)	88, 332, 361, 707
LweI	GCATC	4 cut(s)	184, 489, 538, 661
MaeI	CTAG	3 cut(s)	177, 324, 558
MaeIII	GTNAC	1 cut(s)	46
MalI	GATC	3 cut(s)	267, 328, 488
MboI	GATC	3 cut(s)	265, 326, 486
MboII	GAAGA	4 cut(s)	20, 165, 665, 786
MhlI	GDGCHC	1 cut(s)	111
MlsI	TGGCCA	1 cut(s)	243
MluNI	TGGCCA	1 cut(s)	243
MnlI	CCTC	8 cut(s)	27, 120, 193, 208, 589, 739, 757, 770
Mox20I	TGGCCA	1 cut(s)	243
MscI	TGGCCA	1 cut(s)	243
MseI	TTAA	4 cut(s)	68, 585, 648, 731
Msp20I	TGGCCA	1 cut(s)	243
MspI	CCGG	1 cut(s)	403
MspR9I	CCNGG	1 cut(s)	743
Mva1269I	GAATGC	1 cut(s)	424
MvaI	CCWGG	1 cut(s)	743
MwoI	GCNNNNNNNGC	5 cut(s)	151, 341, 346, 680, 701
NcoI	CCATGG	1 cut(s)	591
NdeII	GATC	3 cut(s)	265, 326, 486
NlaIII	CATG	3 cut(s)	577, 595, 692
NlaIV	GGNNCC	1 cut(s)	781
NspI	RCATGY	1 cut(s)	692
PciSI	GCTCTTC	1 cut(s)	648
PctI	GAATGC	1 cut(s)	424
PfeI	GAWTC	3 cut(s)	281, 299, 600
PfoI	TCCNGGA	1 cut(s)	741
PkrI	GCNGC	5 cut(s)	103, 322, 351, 697, 784
Psp6I	CCWGG	1 cut(s)	741
PspGI	CCWGG	1 cut(s)	741
PspN4I	GGNNCC	1 cut(s)	781
PspPI	GGNCC	1 cut(s)	217
PstI	CTGCAG	1 cut(s)	706
PstNI	CAGNNNCTG	1 cut(s)	701
RsaI	GTAC	3 cut(s)	636, 754, 768
RsaNI	GTAC	3 cut(s)	635, 753, 767
SapI	GCTCTTC	1 cut(s)	648
SaqAI	TTAA	4 cut(s)	68, 585, 648, 731
SatI	GCNGC	5 cut(s)	102, 321, 350, 696, 783
Sau3AI	GATC	3 cut(s)	265, 326, 486
Sau96I	GGNCC	1 cut(s)	217
ScrFI	CCNGG	1 cut(s)	743
SduI	GDGCHC	1 cut(s)	111
SfaNI	GCATC	4 cut(s)	184, 489, 538, 661
SfcI	CTRYAG	1 cut(s)	702
SinI	GGWCC	1 cut(s)	217
SsiI	CCGC	2 cut(s)	104, 783
SspMI	CTAG	3 cut(s)	177, 324, 558
StyD4I	CCNGG	1 cut(s)	741
StyI	CCWWGG	1 cut(s)	591
TaaI	ACNGT	2 cut(s)	250, 540
TaqI	TCGA	1 cut(s)	81
TatI	WGTACW	1 cut(s)	752
TauI	GCSGC	1 cut(s)	785
TfiI	GAWTC	3 cut(s)	281, 299, 600
Tru1I	TTAA	4 cut(s)	68, 585, 648, 731
Tru9I	TTAA	4 cut(s)	68, 585, 648, 731
TscAI	CASTG	5 cut(s)	291, 342, 351, 568, 722
TseI	GCWGC	4 cut(s)	101, 320, 349, 695
TspDTI	ATGAA	5 cut(s)	36, 69, 273, 411, 590
TspRI	CASTG	5 cut(s)	291, 342, 351, 568, 722
VneI	GTGCAC	1 cut(s)	107
VpaK11BI	GGWCC	1 cut(s)	217
XapI	RAATTY	3 cut(s)	426, 455, 523
XceI	RCATGY	1 cut(s)	692
XcmI	CCANNNNNNNNNTGG	1 cut(s)	227
XspI	CTAG	3 cut(s)	177, 324, 558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.