Rh6AG517600

Coiled-coil domain-containing protein 93

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0008812
Physical Location & Seq
Reverse (-)
68773163 .. 68777008
3846 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG517600.1

Sequence Viewer

Length: 789 bp
ATGCTACAAGACAACCTGAATGAATTGATTGAGAGAAAGGTCACTGTTATGGATGAATTGCAAAGCTTAAGAGAGAAAATTGATAATGAAGGTGCTAAAGCCGTGGTGGACAAGTTGGTATCGCTTAAGAAGTCATTGAAGGAGCTGGAGAGGGAAGAAAATGAAGTTGAGTCTGTAAGTAATTCTGCATTGGATGCTGAAGTTCGTGAATTGGAGGACCAAATAGAAAATGGGTATGATAGTCAATCACTATCTGATAAATTGAATCGGATGTTGAGTAAATCAGAGGAGAAAATTGATTTAGCTAAAAAGGAACTTGCAGCTAGATTAAGGGCAGTGTTGGCAGTACAGCGCAAGATTGATGATGTTCCATGCCAATCAGAATTCGTCCAGTATGATCACCGGCTTTTAGAATTGAATGCTCAAATTCAAGGAAAACTTCGACAGACTCGTAAATACTATGCCACATACAATGCACTTTTGGAGATAAAAGAAATGATGCTAAAGGAAGCATCTTTGCTGAATTCAATAAGTTCGCAGTTTCAAGATGCATTCACTAGCACAGATGGTCGCATGCAACTCATCAATTCGATGGAGGGAATTATGAAGGGCAGTCAACAGAAGCTGAAAAAGGTAGAACAAGGGCTTCAAGAAGAGCAAAAAGTTTGTGATGCTCTCAAAGCAAGGCATGTTGCAGCAACTGCAGAGCAAAGACGCTGTTATTCCCTCTTAAAAGCTTTTCAGGAGGAATGTGCAAAGAATGAGCTACTCCAAAAAAGTTCCATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KOG2701

Protein Analysis

262

Amino Acids

29.99

Weight (kDa)

5.44

Isoelectric Point (pI)

43.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCDC93_CC PF09762 6 - 259 1.3e-46 CCDC93 coiled-coil domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 3 cut(s) 383, 426, 523
AcuI CTGAAG 1 cut(s) 219
AfaI GTAC 1 cut(s) 348
AflII CTTAAG 2 cut(s) 67, 125
AgsI TTSAA 7 cut(s) 139, 265, 418, 431, 528, 545, 650
AluBI AGCT 7 cut(s) 66, 145, 305, 323, 625, 737, 766
AluI AGCT 7 cut(s) 66, 145, 305, 323, 625, 737, 766
AlwNI CAGNNNCTG 2 cut(s) 625, 701
ApeKI GCWGC 2 cut(s) 320, 695
ApoI RAATTY 3 cut(s) 383, 426, 523
AspLEI GCGC 1 cut(s) 354
AspS9I GGNCC 1 cut(s) 217
AsuHPI GGTGA 1 cut(s) 392
AvaII GGWCC 1 cut(s) 217
BbvI GCAGC 2 cut(s) 332, 707
BccI CCATC 2 cut(s) 560, 586
BceAI ACGGC 1 cut(s) 86
BclI TGATCA 1 cut(s) 397
BfaI CTAG 2 cut(s) 324, 558
BfmI CTRYAG 1 cut(s) 702
BfrI CTTAAG 2 cut(s) 67, 125
BisI GCNGC 2 cut(s) 321, 696
BlsI GCNGC 2 cut(s) 322, 697
Bme18I GGWCC 1 cut(s) 217
BmgT120I GGNCC 1 cut(s) 217
BmsI GCATC 5 cut(s) 184, 489, 521, 538, 661
BpmI CTGGAG 1 cut(s) 167
BsaJI CCNNGG 1 cut(s) 102
Bse118I RCCGGY 1 cut(s) 402
Bse1I ACTGG 1 cut(s) 391
BseDI CCNNGG 1 cut(s) 102
BseGI GGATG 3 cut(s) 58, 199, 276
BseNI ACTGG 1 cut(s) 391
BseRI GAGGAG 1 cut(s) 302
BseXI GCAGC 2 cut(s) 332, 707
BsiSI CCGG 1 cut(s) 403
BsmI GAATGC 2 cut(s) 424, 551
Bsp143I GATC 1 cut(s) 397
BspMAI CTGCAG 1 cut(s) 706
BspQI GCTCTTC 1 cut(s) 648
BspTI CTTAAG 2 cut(s) 67, 125
BsrFI RCCGGY 1 cut(s) 402
BsrI ACTGG 1 cut(s) 391
BssAI RCCGGY 1 cut(s) 402
BssECI CCNNGG 1 cut(s) 102
BssMI GATC 1 cut(s) 397
Bst4CI ACNGT 1 cut(s) 46
Bst6I CTCTTC 1 cut(s) 648
BstAFI CTTAAG 2 cut(s) 67, 125
BstAPI GCANNNNNTGC 2 cut(s) 194, 701
BstC8I GCNNGC 1 cut(s) 575
BstDSI CCRYGG 1 cut(s) 102
BstF5I GGATG 3 cut(s) 58, 199, 276
BstHHI GCGC 1 cut(s) 354
BstKTI GATC 1 cut(s) 400
BstMBI GATC 1 cut(s) 397
BstMWI GCNNNNNNNGC 4 cut(s) 194, 341, 680, 701
BstNSI RCATGY 2 cut(s) 577, 692
BstSFI CTRYAG 1 cut(s) 702
BstV1I GCAGC 2 cut(s) 332, 707
BtgI CCRYGG 1 cut(s) 102
BtsCI GGATG 3 cut(s) 58, 199, 276
BtsI GCAGTG 1 cut(s) 342
BtsIMutI CAGTG 2 cut(s) 42, 342
Cac8I GCNNGC 1 cut(s) 575
CaiI CAGNNNCTG 2 cut(s) 625, 701
CfoI GCGC 1 cut(s) 354
Cfr10I RCCGGY 1 cut(s) 402
Cfr13I GGNCC 1 cut(s) 217
CseI GACGC 1 cut(s) 723
Csp6I GTAC 1 cut(s) 347
CviAII CATG 3 cut(s) 372, 574, 689
CviQI GTAC 1 cut(s) 347
DpnI GATC 1 cut(s) 399
DpnII GATC 1 cut(s) 397
Eam1104I CTCTTC 1 cut(s) 648
EarI CTCTTC 1 cut(s) 648
Eco47I GGWCC 1 cut(s) 217
Eco57I CTGAAG 1 cut(s) 219
EcoRI GAATTC 2 cut(s) 383, 523
EcoT22I ATGCAT 1 cut(s) 553
FaeI CATG 3 cut(s) 375, 577, 692
FaiI YATR 9 cut(s) 50, 237, 373, 396, 462, 469, 575, 605, 690
FalI AAGNNNNNCTT 2 cut(s) 423, 455
FatI CATG 3 cut(s) 371, 573, 688
FbaI TGATCA 1 cut(s) 397
Fnu4HI GCNGC 2 cut(s) 321, 696
FokI GGATG 3 cut(s) 65, 206, 283
Fsp4HI GCNGC 2 cut(s) 321, 696
FspBI CTAG 2 cut(s) 324, 558
GlaI GCGC 1 cut(s) 353
GluI GCNGC 2 cut(s) 321, 696
GsuI CTGGAG 1 cut(s) 167
HapII CCGG 1 cut(s) 403
HgaI GACGC 1 cut(s) 723
HhaI GCGC 1 cut(s) 354
Hin1II CATG 3 cut(s) 375, 577, 692
Hin6I GCGC 1 cut(s) 352
HinP1I GCGC 1 cut(s) 352
HincII GTYRAC 1 cut(s) 617
HindII GTYRAC 1 cut(s) 617
HindIII AAGCTT 2 cut(s) 64, 735
HinfI GANTC 3 cut(s) 170, 265, 448
HpaII CCGG 1 cut(s) 403
HphI GGTGA 1 cut(s) 392
Hpy166II GTNNAC 2 cut(s) 109, 617
Hpy188I TCNGA 4 cut(s) 256, 270, 286, 382
Hpy188III TCNNGA 4 cut(s) 206, 545, 650, 743
Hpy8I GTNNAC 2 cut(s) 109, 617
HpyAV CCTTC 3 cut(s) 83, 133, 601
HpyCH4III ACNGT 1 cut(s) 46
HpyCH4V TGCA 9 cut(s) 61, 188, 320, 476, 551, 577, 695, 704, 755
HpyF10VI GCNNNNNNNGC 4 cut(s) 194, 341, 680, 701
Hsp92II CATG 3 cut(s) 375, 577, 692
HspAI GCGC 1 cut(s) 352
Ksp22I TGATCA 1 cut(s) 397
Kzo9I GATC 1 cut(s) 397
LguI GCTCTTC 1 cut(s) 648
LmnI GCTCC 1 cut(s) 142
LpnPI CCDG 5 cut(s) 29, 131, 404, 416, 728
Lsp1109I GCAGC 2 cut(s) 332, 707
LweI GCATC 5 cut(s) 184, 489, 521, 538, 661
MaeI CTAG 2 cut(s) 324, 558
MaeIII GTNAC 1 cut(s) 40
MalI GATC 1 cut(s) 399
MboI GATC 1 cut(s) 397
MboII GAAGA 2 cut(s) 167, 665
MlyI GAGTC 2 cut(s) 179, 442
MnlI CCTC 6 cut(s) 144, 208, 280, 589, 737, 739
Mph1103I ATGCAT 1 cut(s) 553
MseI TTAA 4 cut(s) 68, 126, 329, 731
MslI CAYNNNNRTG 1 cut(s) 47
MspCI CTTAAG 2 cut(s) 67, 125
MspI CCGG 1 cut(s) 403
Mva1269I GAATGC 2 cut(s) 424, 551
MwoI GCNNNNNNNGC 4 cut(s) 194, 341, 680, 701
NdeII GATC 1 cut(s) 397
NlaIII CATG 3 cut(s) 375, 577, 692
NmuCI GTSAC 1 cut(s) 40
NsiI ATGCAT 1 cut(s) 553
NspI RCATGY 2 cut(s) 577, 692
PaeI GCATGC 1 cut(s) 577
PciSI GCTCTTC 1 cut(s) 648
PcsI WCGNNNNNNNCGW 1 cut(s) 448
PctI GAATGC 2 cut(s) 424, 551
PfeI GAWTC 1 cut(s) 265
PkrI GCNGC 2 cut(s) 322, 697
PleI GAGTC 2 cut(s) 178, 442
PpsI GAGTC 2 cut(s) 178, 442
PspPI GGNCC 1 cut(s) 217
PstI CTGCAG 1 cut(s) 706
PstNI CAGNNNCTG 2 cut(s) 625, 701
RsaI GTAC 1 cut(s) 348
RsaNI GTAC 1 cut(s) 347
RseI CAYNNNNRTG 1 cut(s) 47
SapI GCTCTTC 1 cut(s) 648
SaqAI TTAA 4 cut(s) 68, 126, 329, 731
SatI GCNGC 2 cut(s) 321, 696
Sau3AI GATC 1 cut(s) 397
Sau96I GGNCC 1 cut(s) 217
SchI GAGTC 2 cut(s) 179, 442
SfaNI GCATC 5 cut(s) 184, 489, 521, 538, 661
SfcI CTRYAG 1 cut(s) 702
SinI GGWCC 1 cut(s) 217
SmiMI CAYNNNNRTG 1 cut(s) 47
SmlI CTYRAG 2 cut(s) 67, 125
SmoI CTYRAG 2 cut(s) 67, 125
SphI GCATGC 1 cut(s) 577
SspMI CTAG 2 cut(s) 324, 558
TaaI ACNGT 1 cut(s) 46
TaqI TCGA 2 cut(s) 442, 590
TatI WGTACW 1 cut(s) 346
TfiI GAWTC 1 cut(s) 265
Tru1I TTAA 4 cut(s) 68, 126, 329, 731
Tru9I TTAA 4 cut(s) 68, 126, 329, 731
TscAI CASTG 2 cut(s) 49, 342
TseFI GTSAC 1 cut(s) 40
TseI GCWGC 2 cut(s) 320, 695
Tsp45I GTSAC 1 cut(s) 40
TspDTI ATGAA 5 cut(s) 36, 69, 102, 177, 620
TspRI CASTG 2 cut(s) 49, 342
Vha464I CTTAAG 2 cut(s) 67, 125
VpaK11BI GGWCC 1 cut(s) 217
XapI RAATTY 3 cut(s) 383, 426, 523
XceI RCATGY 2 cut(s) 577, 692
XcmI CCANNNNNNNNNTGG 1 cut(s) 227
XspI CTAG 2 cut(s) 324, 558
Zsp2I ATGCAT 1 cut(s) 553
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.