Rh6DG520400

Coiled-coil domain-containing protein 93

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0008812
Physical Location & Seq
Reverse (-)
67098148 .. 67101556
3409 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG520400.1

Sequence Viewer

Length: 732 bp
ATGCTACAAGACAACCTGAATGAATTGATTGAGAGAAAGGTCACTGTTATGAATGAATTGCAAAGCTTAAGAGAGAAAATTGATAATGAAGGTGCTAAAGCCGTGGTGGACAAGTTGGTATCGCTTAAGAAGTCATTGAAGGAGCTGGAGAGGGAAGAAAATGAAGTTGAGTCTGTAAGTAATTCTGAATTGGATGCTGAAGTTCATGAATTGGAGGAGCAAATAGAAAATGGGTATGATAGTCAATCACTCTCTGGTAAATTGAATCGGATGTTGAGTGAATCAGAGGAGAAAATTGATTTAGCTATAAAGGAACTTGCAGCTAGATTAAGGGCAGTGTTGGCAGTACAGCGCAAGATTGATGATGTTCCATGCCAATCAGAATTTGTCCAGTATGATCACCGGCTTTCAGAATTGAATGCTCAAATTCAAGGAAAACTTAGACAGACTCGTAAATACTATGCCACATACAATGCACTTTTGGAGATAAAAGAAATGATGCTAAAGGAAGCATCTTTGCTGAATTCAATAAGTTCGCAGTTTCAAGATGCATTCACTAGCATGGATGGTCGCATGAAACTCATCAATTCGATGGAGGGAATTATGAAGGGCAGTCAACAGGTAAATGTCAAAATGTCGTCAACTTGTGTGCATGTTTTCTGTTGCAGATTTAAAGAACACCCAAACTGTGCCTTGAAAGTATTCTGCAATTCTTGCAGAGGTAGAATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KOG2701

Protein Analysis

243

Amino Acids

27.8

Weight (kDa)

5.59

Isoelectric Point (pI)

38.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCDC93_CC PF09762 5 - 212 8.6e-34 CCDC93 coiled-coil domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 4 cut(s) 383, 426, 523, 726
AcuI CTGAAG 1 cut(s) 219
AfaI GTAC 1 cut(s) 348
AflII CTTAAG 2 cut(s) 67, 125
AgsI TTSAA 7 cut(s) 139, 265, 418, 431, 528, 545, 697
AluBI AGCT 4 cut(s) 66, 145, 305, 323
AluI AGCT 4 cut(s) 66, 145, 305, 323
ApeKI GCWGC 1 cut(s) 320
ApoI RAATTY 4 cut(s) 383, 426, 523, 726
Asp700I GAANNNNTTC 1 cut(s) 701
AspLEI GCGC 1 cut(s) 354
AsuHPI GGTGA 1 cut(s) 392
BbvI GCAGC 1 cut(s) 332
BccI CCATC 2 cut(s) 560, 586
BceAI ACGGC 1 cut(s) 86
BclI TGATCA 1 cut(s) 397
BfaI CTAG 2 cut(s) 324, 558
BfrI CTTAAG 2 cut(s) 67, 125
BisI GCNGC 1 cut(s) 321
BlsI GCNGC 1 cut(s) 322
BmsI GCATC 4 cut(s) 184, 489, 521, 538
BpmI CTGGAG 1 cut(s) 167
BsaJI CCNNGG 1 cut(s) 102
Bse118I RCCGGY 1 cut(s) 402
Bse1I ACTGG 1 cut(s) 391
BseDI CCNNGG 1 cut(s) 102
BseGI GGATG 3 cut(s) 199, 276, 571
BseNI ACTGG 1 cut(s) 391
BseRI GAGGAG 2 cut(s) 230, 302
BseXI GCAGC 1 cut(s) 332
BsiSI CCGG 1 cut(s) 403
BsmI GAATGC 2 cut(s) 424, 551
Bsp143I GATC 1 cut(s) 397
BspHI TCATGA 1 cut(s) 205
BspTI CTTAAG 2 cut(s) 67, 125
BsrFI RCCGGY 1 cut(s) 402
BsrI ACTGG 1 cut(s) 391
BssAI RCCGGY 1 cut(s) 402
BssECI CCNNGG 1 cut(s) 102
BssMI GATC 1 cut(s) 397
Bst4CI ACNGT 2 cut(s) 46, 689
BstAFI CTTAAG 2 cut(s) 67, 125
BstAPI GCANNNNNTGC 1 cut(s) 714
BstDEI CTNAG 1 cut(s) 440
BstDSI CCRYGG 1 cut(s) 102
BstF5I GGATG 3 cut(s) 199, 276, 571
BstHHI GCGC 1 cut(s) 354
BstKTI GATC 1 cut(s) 400
BstMBI GATC 1 cut(s) 397
BstMWI GCNNNNNNNGC 2 cut(s) 341, 714
BstNSI RCATGY 1 cut(s) 656
BstV1I GCAGC 1 cut(s) 332
BtgI CCRYGG 1 cut(s) 102
BtsCI GGATG 3 cut(s) 199, 276, 571
BtsI GCAGTG 1 cut(s) 342
BtsIMutI CAGTG 2 cut(s) 42, 342
CciI TCATGA 1 cut(s) 205
CfoI GCGC 1 cut(s) 354
Cfr10I RCCGGY 1 cut(s) 402
Csp6I GTAC 1 cut(s) 347
CviAII CATG 5 cut(s) 206, 372, 562, 574, 653
CviJI RGCY 6 cut(s) 66, 101, 145, 305, 323, 406
CviKI_1 RGCY 6 cut(s) 66, 101, 145, 305, 323, 406
CviQI GTAC 1 cut(s) 347
DdeI CTNAG 1 cut(s) 440
DpnI GATC 1 cut(s) 399
DpnII GATC 1 cut(s) 397
DraI TTTAAA 1 cut(s) 673
Eco57I CTGAAG 1 cut(s) 219
EcoRI GAATTC 1 cut(s) 523
EcoT22I ATGCAT 1 cut(s) 553
FaeI CATG 5 cut(s) 209, 375, 565, 577, 656
FalI AAGNNNNNCTT 2 cut(s) 423, 455
FatI CATG 5 cut(s) 205, 371, 561, 573, 652
FbaI TGATCA 1 cut(s) 397
Fnu4HI GCNGC 1 cut(s) 321
FokI GGATG 3 cut(s) 206, 283, 578
Fsp4HI GCNGC 1 cut(s) 321
FspBI CTAG 2 cut(s) 324, 558
GlaI GCGC 1 cut(s) 353
GluI GCNGC 1 cut(s) 321
GsuI CTGGAG 1 cut(s) 167
HapII CCGG 1 cut(s) 403
HhaI GCGC 1 cut(s) 354
Hin1II CATG 5 cut(s) 209, 375, 565, 577, 656
Hin6I GCGC 1 cut(s) 352
HinP1I GCGC 1 cut(s) 352
HincII GTYRAC 2 cut(s) 617, 642
HindII GTYRAC 2 cut(s) 617, 642
HindIII AAGCTT 1 cut(s) 64
HinfI GANTC 4 cut(s) 170, 265, 281, 448
HpaII CCGG 1 cut(s) 403
HphI GGTGA 1 cut(s) 392
Hpy166II GTNNAC 3 cut(s) 109, 617, 642
Hpy188I TCNGA 5 cut(s) 187, 270, 286, 382, 412
Hpy188III TCNNGA 2 cut(s) 206, 545
Hpy8I GTNNAC 3 cut(s) 109, 617, 642
HpyAV CCTTC 3 cut(s) 83, 133, 601
HpyCH4III ACNGT 2 cut(s) 46, 689
HpyCH4V TGCA 8 cut(s) 61, 320, 476, 551, 652, 666, 708, 717
HpyF10VI GCNNNNNNNGC 2 cut(s) 341, 714
HpyF3I CTNAG 1 cut(s) 440
Hsp92II CATG 5 cut(s) 209, 375, 565, 577, 656
HspAI GCGC 1 cut(s) 352
Ksp22I TGATCA 1 cut(s) 397
Kzo9I GATC 1 cut(s) 397
LmnI GCTCC 2 cut(s) 142, 217
LpnPI CCDG 6 cut(s) 29, 131, 240, 404, 416, 605
Lsp1109I GCAGC 1 cut(s) 332
LweI GCATC 4 cut(s) 184, 489, 521, 538
MaeI CTAG 2 cut(s) 324, 558
MaeIII GTNAC 1 cut(s) 40
MalI GATC 1 cut(s) 399
MboI GATC 1 cut(s) 397
MboII GAAGA 1 cut(s) 167
MlyI GAGTC 2 cut(s) 179, 442
MnlI CCTC 5 cut(s) 144, 208, 280, 589, 713
Mph1103I ATGCAT 1 cut(s) 553
MroXI GAANNNNTTC 1 cut(s) 701
MseI TTAA 4 cut(s) 68, 126, 329, 672
MslI CAYNNNNRTG 2 cut(s) 47, 560
MspCI CTTAAG 2 cut(s) 67, 125
MspI CCGG 1 cut(s) 403
Mva1269I GAATGC 2 cut(s) 424, 551
MwoI GCNNNNNNNGC 2 cut(s) 341, 714
NdeII GATC 1 cut(s) 397
NlaIII CATG 5 cut(s) 209, 375, 565, 577, 656
NmuCI GTSAC 1 cut(s) 40
NsiI ATGCAT 1 cut(s) 553
NspI RCATGY 1 cut(s) 656
PagI TCATGA 1 cut(s) 205
PctI GAATGC 2 cut(s) 424, 551
PdmI GAANNNNTTC 1 cut(s) 701
PfeI GAWTC 2 cut(s) 265, 281
PkrI GCNGC 1 cut(s) 322
PleI GAGTC 2 cut(s) 178, 442
PpsI GAGTC 2 cut(s) 178, 442
RsaI GTAC 1 cut(s) 348
RsaNI GTAC 1 cut(s) 347
RseI CAYNNNNRTG 2 cut(s) 47, 560
SaqAI TTAA 4 cut(s) 68, 126, 329, 672
SatI GCNGC 1 cut(s) 321
Sau3AI GATC 1 cut(s) 397
SchI GAGTC 2 cut(s) 179, 442
SetI ASST 9 cut(s) 18, 42, 68, 94, 147, 307, 325, 624, 724
SfaNI GCATC 4 cut(s) 184, 489, 521, 538
SmiMI CAYNNNNRTG 2 cut(s) 47, 560
SmlI CTYRAG 2 cut(s) 67, 125
SmoI CTYRAG 2 cut(s) 67, 125
SspMI CTAG 2 cut(s) 324, 558
TaaI ACNGT 2 cut(s) 46, 689
TaqI TCGA 1 cut(s) 590
TatI WGTACW 1 cut(s) 346
TfiI GAWTC 2 cut(s) 265, 281
Tru1I TTAA 4 cut(s) 68, 126, 329, 672
Tru9I TTAA 4 cut(s) 68, 126, 329, 672
TscAI CASTG 2 cut(s) 49, 342
TseFI GTSAC 1 cut(s) 40
TseI GCWGC 1 cut(s) 320
Tsp45I GTSAC 1 cut(s) 40
TspDTI ATGAA 9 cut(s) 36, 65, 69, 102, 177, 194, 222, 590, 620
TspRI CASTG 2 cut(s) 49, 342
Vha464I CTTAAG 2 cut(s) 67, 125
XapI RAATTY 4 cut(s) 383, 426, 523, 726
XceI RCATGY 1 cut(s) 656
XmnI GAANNNNTTC 1 cut(s) 701
XspI CTAG 2 cut(s) 324, 558
Zsp2I ATGCAT 1 cut(s) 553
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.