Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0008812

Physical Location & Seq

Genomic Coordinates Reverse (-)

9911647 .. 9914676

Gene Structure 3030 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g11670.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGTCAGAAGACAATCTCAACGAATTGATTCAGAAGAAGGTAAATTTCACGAGCGAATTGCAAAGTTTGAGAGAAAAAATCGAAAAGGGAGGCGCTGAAACTGCGGTTGAAAAATTGGTATCGCTCAAGCAGTCACTGAAGGAGTTGGAAAGGCAAACGCTTGAAGTCCAGTCTCTTAGCAATTCCGTATTGGAGGCTGAAGTTCGTAGATTGGAGGACCAAATAGAAAATGGGGTTGATAGTGAGGATGTTCCTGATGAACTGGATCGTTTGTTGAGTGAATCGGAGGCGAAAATCGGTTCGGCGAAAAGGGAACTTGCAGCTAAACTAAGGGCAGTGTTGGCAGTACAGCGCCAGATTGATGATGTTCCTTCGCAATCTGAGCTCGTCCAGTATGAACGCCGGTTGTCAGAATTGAATGCTCAAATTCAGGGAAAACTTCAACAAACTCGGAAATACTATGCCACTTACAATGCACTTTTGGAGATCAAGGAATATATGCTGAAGGAAATGTCATTGTTGAATTCAATAAGTTCACAGTTTCAAGAAGCAATCAATACCACTGACGGTCGCATGAAACTTATCGACTCCATGGAGGGAATCATAAGGGGCAGTCAACAGAAACTTCGAAAGGTACAACATGGGCTTCAAGAAGAGCAAAAAGTTTGTGATGCTCTCAAGGAAAAGTATTTTGCAGCAAGTGCAGAGCAAAGGCACTGTTATTCACTCTTAAAAGCTTTTCAGGAGGAATGTACAAAGAATGAGGTACTCCGAAGAAGTTCTGCTTCAAACATCTCCAGAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KOG2701

Protein Analysis

269

Amino Acids

30.62

Weight (kDa)

5.36

Isoelectric Point (pI)

64.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32560 AT4G32560 AT4G32560 AT4G32560
fragaria_vesca	FvH4_2g30000 FvH4_2g30000
malus_domestica	MD08G1138500.v1.1 MD08G1138600.v1.1 MD15G1116400.v1.1
prunus_persica	Prupe.1G467900_v2.0.a1
pyrus_communis	pycom08g11670 pycom15g10490
rosa_chinensis	RchiOBHm_Chr6g0312911
rosa_laevigata	RLG00000010289
rosa_multiflora	Rmu_sc0008049.1_g000027
rosa_roxburghii	Rroxscaffold_7G00156340
rosa_rugosa	Rorug06G0400300 Rorug06G0400400
rosa_samantha	Rh6AG517600 Rh6BG529300 Rh6CG533700 Rh6DG520400
rosa_wichuraiana	Rw6G044970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	104
AclWI	GGATC	1 cut(s)	273
AcsI	RAATTY	3 cut(s)	43, 426, 523
AcuI	CTGAAG	3 cut(s)	158, 219, 524
AfaI	GTAC	4 cut(s)	348, 636, 754, 768
AgsI	TTSAA	9 cut(s)	110, 164, 418, 443, 523, 528, 545, 650, 789
AluBI	AGCT	3 cut(s)	323, 385, 737
AluI	AGCT	3 cut(s)	323, 385, 737
Alw21I	GWGCWC	1 cut(s)	387
Alw26I	GTCTC	1 cut(s)	177
AlwI	GGATC	1 cut(s)	273
AlwNI	CAGNNNCTG	1 cut(s)	136
ApeKI	GCWGC	2 cut(s)	320, 695
ApoI	RAATTY	3 cut(s)	43, 426, 523
Asp700I	GAANNNNTTC	2 cut(s)	27, 778
AspLEI	GCGC	2 cut(s)	95, 354
AspS9I	GGNCC	1 cut(s)	217
AsuII	TTCGAA	1 cut(s)	628
AvaII	GGWCC	1 cut(s)	217
BanII	GRGCYC	1 cut(s)	387
BauI	CACGAG	1 cut(s)	49
BbsI	GAAGAC	1 cut(s)	15
Bbv12I	GWGCWC	1 cut(s)	387
BbvI	GCAGC	2 cut(s)	332, 707
BcgI	CGANNNNNNTGC	2 cut(s)	40, 74
BcoDI	GTCTC	1 cut(s)	177
BfoI	RGCGCY	2 cut(s)	96, 355
BisI	GCNGC	2 cut(s)	321, 696
BlsI	GCNGC	2 cut(s)	322, 697
Bme18I	GGWCC	1 cut(s)	217
BmgT120I	GGNCC	1 cut(s)	217
BmsI	GCATC	1 cut(s)	661
BpiI	GAAGAC	1 cut(s)	15
BpmI	CTGGAG	1 cut(s)	781
Bpu14I	TTCGAA	1 cut(s)	628
BpuEI	CTTGAG	2 cut(s)	110, 662
BsaJI	CCNNGG	1 cut(s)	591
Bse118I	RCCGGY	1 cut(s)	402
Bse1I	ACTGG	3 cut(s)	169, 267, 391
BseDI	CCNNGG	1 cut(s)	591
BseGI	GGATG	1 cut(s)	253
BseMII	CTCAG	1 cut(s)	372
BseNI	ACTGG	3 cut(s)	169, 267, 391
BseXI	GCAGC	2 cut(s)	332, 707
BsgI	GTGCAG	1 cut(s)	723
Bsh1285I	CGRYCG	1 cut(s)	571
BsiEI	CGRYCG	1 cut(s)	571
BsiHKAI	GWGCWC	1 cut(s)	387
BsiSI	CCGG	1 cut(s)	403
BsmAI	GTCTC	1 cut(s)	177
BsmI	GAATGC	1 cut(s)	424
Bsp119I	TTCGAA	1 cut(s)	628
Bsp1286I	GDGCHC	1 cut(s)	387
Bsp1407I	TGTACA	1 cut(s)	752
Bsp143I	GATC	2 cut(s)	265, 486
Bsp19I	CCATGG	1 cut(s)	591
BspACI	CCGC	1 cut(s)	104
BspCNI	CTCAG	1 cut(s)	373
BspPI	GGATC	1 cut(s)	273
BspQI	GCTCTTC	1 cut(s)	648
BspT104I	TTCGAA	1 cut(s)	628
BsrFI	RCCGGY	1 cut(s)	402
BsrGI	TGTACA	1 cut(s)	752
BsrI	ACTGG	3 cut(s)	169, 267, 391
BssAI	RCCGGY	1 cut(s)	402
BssECI	CCNNGG	1 cut(s)	591
BssMI	GATC	2 cut(s)	265, 486
BssSI	CACGAG	1 cut(s)	49
BssT1I	CCWWGG	1 cut(s)	591
Bst2BI	CACGAG	1 cut(s)	49
Bst4CI	ACNGT	3 cut(s)	540, 569, 719
Bst6I	CTCTTC	1 cut(s)	648
BstAPI	GCANNNNNTGC	1 cut(s)	701
BstAUI	TGTACA	1 cut(s)	752
BstBI	TTCGAA	1 cut(s)	628
BstDEI	CTNAG	3 cut(s)	176, 329, 381
BstDSI	CCRYGG	1 cut(s)	591
BstF5I	GGATG	1 cut(s)	253
BstH2I	RGCGCY	2 cut(s)	96, 355
BstHHI	GCGC	2 cut(s)	95, 354
BstKTI	GATC	2 cut(s)	268, 489
BstMAI	GTCTC	1 cut(s)	177
BstMBI	GATC	2 cut(s)	265, 486
BstMCI	CGRYCG	1 cut(s)	571
BstMWI	GCNNNNNNNGC	4 cut(s)	101, 341, 382, 701
BstV1I	GCAGC	2 cut(s)	332, 707
BstV2I	GAAGAC	1 cut(s)	15
BtgI	CCRYGG	1 cut(s)	591
BtsCI	GGATG	1 cut(s)	253
BtsI	GCAGTG	1 cut(s)	342
BtsIMutI	CAGTG	4 cut(s)	134, 342, 561, 715
CaiI	CAGNNNCTG	1 cut(s)	136
CfoI	GCGC	2 cut(s)	95, 354
Cfr10I	RCCGGY	1 cut(s)	402
Cfr13I	GGNCC	1 cut(s)	217
Csp6I	GTAC	4 cut(s)	347, 635, 753, 767
CviAII	CATG	3 cut(s)	574, 592, 641
CviJI	RGCY	5 cut(s)	197, 323, 385, 646, 737
CviKI_1	RGCY	5 cut(s)	197, 323, 385, 646, 737
CviQI	GTAC	4 cut(s)	347, 635, 753, 767
DdeI	CTNAG	3 cut(s)	176, 329, 381
DpnI	GATC	2 cut(s)	267, 488
DpnII	GATC	2 cut(s)	265, 486
Eam1104I	CTCTTC	1 cut(s)	648
EarI	CTCTTC	1 cut(s)	648
Ecl136II	GAGCTC	1 cut(s)	385
Eco130I	CCWWGG	1 cut(s)	591
Eco24I	GRGCYC	1 cut(s)	387
Eco47I	GGWCC	1 cut(s)	217
Eco53kI	GAGCTC	1 cut(s)	385
Eco57I	CTGAAG	3 cut(s)	158, 219, 524
EcoICRI	GAGCTC	1 cut(s)	385
EcoRI	GAATTC	1 cut(s)	523
EcoT14I	CCWWGG	1 cut(s)	591
EcoT38I	GRGCYC	1 cut(s)	387
ErhI	CCWWGG	1 cut(s)	591
FaeI	CATG	3 cut(s)	577, 595, 644
FaiI	YATR	8 cut(s)	396, 462, 498, 500, 575, 593, 605, 642
FalI	AAGNNNNNCTT	2 cut(s)	769, 801
FatI	CATG	3 cut(s)	573, 591, 640
Fnu4HI	GCNGC	2 cut(s)	321, 696
FokI	GGATG	1 cut(s)	260
FriOI	GRGCYC	1 cut(s)	387
Fsp4HI	GCNGC	2 cut(s)	321, 696
GlaI	GCGC	2 cut(s)	94, 353
GluI	GCNGC	2 cut(s)	321, 696
GsuI	CTGGAG	1 cut(s)	781
HaeII	RGCGCY	2 cut(s)	96, 355
HapII	CCGG	1 cut(s)	403
HhaI	GCGC	2 cut(s)	95, 354
Hin1II	CATG	3 cut(s)	577, 595, 644
Hin6I	GCGC	2 cut(s)	93, 352
HinP1I	GCGC	2 cut(s)	93, 352
HincII	GTYRAC	1 cut(s)	617
HindII	GTYRAC	1 cut(s)	617
HindIII	AAGCTT	1 cut(s)	735
HinfI	GANTC	4 cut(s)	28, 281, 587, 600
HpaII	CCGG	1 cut(s)	403
Hpy166II	GTNNAC	2 cut(s)	536, 617
Hpy188I	TCNGA	7 cut(s)	7, 33, 286, 382, 412, 453, 773
Hpy188III	TCNNGA	6 cut(s)	49, 254, 545, 650, 743, 798
Hpy8I	GTNNAC	2 cut(s)	536, 617
HpyAV	CCTTC	4 cut(s)	31, 133, 381, 499
HpyCH4III	ACNGT	3 cut(s)	540, 569, 719
HpyCH4V	TGCA	5 cut(s)	61, 320, 476, 695, 704
HpyF10VI	GCNNNNNNNGC	4 cut(s)	101, 341, 382, 701
HpyF3I	CTNAG	3 cut(s)	176, 329, 381
Hsp92II	CATG	3 cut(s)	577, 595, 644
HspAI	GCGC	2 cut(s)	93, 352
Kzo9I	GATC	2 cut(s)	265, 486
LguI	GCTCTTC	1 cut(s)	648
LpnPI	CCDG	8 cut(s)	182, 248, 267, 368, 404, 416, 416, 728
Lsp1109I	GCAGC	2 cut(s)	332, 707
LweI	GCATC	1 cut(s)	661
MaeIII	GTNAC	1 cut(s)	132
MalI	GATC	2 cut(s)	267, 488
MboI	GATC	2 cut(s)	265, 486
MboII	GAAGA	4 cut(s)	20, 46, 665, 786
MhlI	GDGCHC	1 cut(s)	387
MluCI	AATT	8 cut(s)	23, 43, 56, 113, 181, 413, 426, 523
MlyI	GAGTC	1 cut(s)	581
MmeI	TCCRAC	1 cut(s)	126
MnlI	CCTC	8 cut(s)	83, 187, 208, 238, 280, 589, 739, 757
MroXI	GAANNNNTTC	2 cut(s)	27, 778
MseI	TTAA	1 cut(s)	731
MspI	CCGG	1 cut(s)	403
Mva1269I	GAATGC	1 cut(s)	424
MwoI	GCNNNNNNNGC	4 cut(s)	101, 341, 382, 701
NcoI	CCATGG	1 cut(s)	591
NdeII	GATC	2 cut(s)	265, 486
NlaIII	CATG	3 cut(s)	577, 595, 644
NmuCI	GTSAC	1 cut(s)	132
NspV	TTCGAA	1 cut(s)	628
PciSI	GCTCTTC	1 cut(s)	648
PctI	GAATGC	1 cut(s)	424
PdmI	GAANNNNTTC	2 cut(s)	27, 778
PfeI	GAWTC	3 cut(s)	28, 281, 600
PkrI	GCNGC	2 cut(s)	322, 697
PleI	GAGTC	1 cut(s)	581
PpsI	GAGTC	1 cut(s)	581
Psp124BI	GAGCTC	1 cut(s)	387
PspPI	GGNCC	1 cut(s)	217
PstNI	CAGNNNCTG	1 cut(s)	136
RsaI	GTAC	4 cut(s)	348, 636, 754, 768
RsaNI	GTAC	4 cut(s)	347, 635, 753, 767
SacI	GAGCTC	1 cut(s)	387
SapI	GCTCTTC	1 cut(s)	648
SaqAI	TTAA	1 cut(s)	731
SatI	GCNGC	2 cut(s)	321, 696
Sau3AI	GATC	2 cut(s)	265, 486
Sau96I	GGNCC	1 cut(s)	217
SchI	GAGTC	1 cut(s)	581
SduI	GDGCHC	1 cut(s)	387
SetI	ASST	6 cut(s)	42, 325, 387, 636, 739, 768
SfaNI	GCATC	1 cut(s)	661
SfuI	TTCGAA	1 cut(s)	628
SinI	GGWCC	1 cut(s)	217
SmlI	CTYRAG	2 cut(s)	125, 677
SmoI	CTYRAG	2 cut(s)	125, 677
Sse9I	AATT	8 cut(s)	23, 43, 56, 113, 181, 413, 426, 523
SsiI	CCGC	1 cut(s)	104
SstI	GAGCTC	1 cut(s)	387
StyI	CCWWGG	1 cut(s)	591
TaaI	ACNGT	3 cut(s)	540, 569, 719
TaqI	TCGA	3 cut(s)	81, 585, 628
TasI	AATT	8 cut(s)	23, 43, 56, 113, 181, 413, 426, 523
TatI	WGTACW	2 cut(s)	346, 752
TfiI	GAWTC	3 cut(s)	28, 281, 600
Tru1I	TTAA	1 cut(s)	731
Tru9I	TTAA	1 cut(s)	731
TscAI	CASTG	4 cut(s)	141, 342, 568, 722
TseFI	GTSAC	1 cut(s)	132
TseI	GCWGC	2 cut(s)	320, 695
Tsp45I	GTSAC	1 cut(s)	132
TspDTI	ATGAA	3 cut(s)	273, 411, 590
TspGWI	ACGGA	1 cut(s)	175
TspRI	CASTG	4 cut(s)	141, 342, 568, 722
VpaK11BI	GGWCC	1 cut(s)	217
XapI	RAATTY	3 cut(s)	43, 426, 523
XcmI	CCANNNNNNNNNTGG	1 cut(s)	227
XmnI	GAANNNNTTC	2 cut(s)	27, 778

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.