Rorug06G0400300

Coiled-coil domain-containing protein 93

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0008812
Physical Location & Seq
Reverse (-)
54491623 .. 54492299
677 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0400300.1

Sequence Viewer

Length: 489 bp
ATGGCCTTCACCATATTCGACGTCGTTTCGCACCACTCAGACAACTACTACAGTGCCTCCGGCAAGAAGCAGAAATACGGCGGATCCGTCCACAAGTTGATCATGAAGGAGTGGCGGATTCTGGAGAACAATCTCCCCGACTCTATCTACGCGTGCGTGTACGAGACGCGCCTTGATCTTCTCAGAGCCGTCATCGTTGGCGCTGCCGGGACTCCCTACCACGACGCGCTCTTCTTCGATATCAACTTCCAGTCGGACTACTCGACCCAGCCGCCCAACGTGCAATACCGCTTCTACGGGTTGCGGGTCAACCCAAATCTTTACGTGAGCGGGTACGTCTGCCTGAGCCTGCTCAGCACCTGGACCAGAAAGAAGAGGGAGAAGTGGGACCCGGCTCAGTCCACCGTCCTCCAGGTTCTAGTCTTGATCCAAGCGCTCGTTTTGAACGAGAAGCGGTTTGTGTTCTTCTCCATCGCATGGGTGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KOG2701

Protein Analysis

162

Amino Acids

18.73

Weight (kDa)

9.04

Isoelectric Point (pI)

31.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UQ_con PF00179 34 - 148 1.6e-16 Ubiquitin-conjugating enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 24
AccB7I CCANNNNNTGG 1 cut(s) 477
AccBSI CCGCTC 1 cut(s) 330
AccII CGCG 3 cut(s) 152, 169, 227
AciI CCGC 7 cut(s) 81, 115, 272, 289, 304, 330, 454
AclWI GGATC 3 cut(s) 78, 91, 421
AcyI GRCGYC 1 cut(s) 21
AfaI GTAC 2 cut(s) 161, 335
AfeI AGCGCT 1 cut(s) 435
AfiI CCNNNNNNNGG 1 cut(s) 477
AflIII ACRYGT 1 cut(s) 150
AgsI TTSAA 1 cut(s) 445
AjnI CCWGG 2 cut(s) 359, 411
Alw26I GTCTC 1 cut(s) 158
AlwI GGATC 3 cut(s) 78, 91, 421
AlwNI CAGNNNCTG 1 cut(s) 360
Aor51HI AGCGCT 1 cut(s) 435
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 203
AspLEI GCGC 4 cut(s) 171, 203, 229, 436
AspS9I GGNCC 2 cut(s) 363, 388
AsuC2I CCSGG 2 cut(s) 208, 392
AvaII GGWCC 2 cut(s) 363, 388
BamHI GGATCC 1 cut(s) 83
BarI GAAGNNNNNNTAC 2 cut(s) 59, 91
BbvI GCAGC 1 cut(s) 190
BccI CCATC 1 cut(s) 479
BceAI ACGGC 2 cut(s) 94, 173
BciT130I CCWGG 2 cut(s) 361, 413
BclI TGATCA 1 cut(s) 99
BcnI CCSGG 2 cut(s) 208, 392
BcoDI GTCTC 1 cut(s) 158
BfaI CTAG 1 cut(s) 419
BfmI CTRYAG 1 cut(s) 49
BfoI RGCGCY 2 cut(s) 204, 437
BisI GCNGC 2 cut(s) 204, 272
BlpI GCTNAGC 1 cut(s) 353
BlsI GCNGC 2 cut(s) 205, 273
Bme1390I CCNGG 4 cut(s) 208, 361, 392, 413
Bme18I GGWCC 2 cut(s) 363, 388
BmgT120I GGNCC 2 cut(s) 363, 388
BmiI GGNNCC 3 cut(s) 85, 389, 390
BmrFI CCNGG 4 cut(s) 208, 361, 392, 413
BpmI CTGGAG 2 cut(s) 143, 395
Bpu10I CCTNAGC 1 cut(s) 344
Bpu1102I GCTNAGC 1 cut(s) 353
BpuMI CCSGG 2 cut(s) 208, 392
BsaAI YACGTR 1 cut(s) 325
BsaHI GRCGYC 1 cut(s) 21
BsaXI ACNNNNNCTCC 2 cut(s) 41, 71
Bsc4I CCNNNNNNNGG 1 cut(s) 477
Bse1I ACTGG 1 cut(s) 250
BseBI CCWGG 2 cut(s) 361, 413
BseLI CCNNNNNNNGG 1 cut(s) 477
BseMII CTCAG 5 cut(s) 51, 196, 335, 367, 410
BseNI ACTGG 1 cut(s) 250
BseXI GCAGC 1 cut(s) 190
BseYI CCCAGC 1 cut(s) 267
Bsh1236I CGCG 3 cut(s) 152, 169, 227
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 3 cut(s) 60, 207, 392
BslFI GGGAC 2 cut(s) 223, 401
BslI CCNNNNNNNGG 1 cut(s) 477
BsmAI GTCTC 1 cut(s) 158
BsmBI CGTCTC 1 cut(s) 158
BsmFI GGGAC 2 cut(s) 223, 401
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 4 cut(s) 83, 99, 175, 426
Bsp1720I GCTNAGC 1 cut(s) 353
BspACI CCGC 7 cut(s) 81, 115, 272, 289, 304, 330, 454
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 5 cut(s) 50, 195, 336, 366, 409
BspFNI CGCG 3 cut(s) 152, 169, 227
BspHI TCATGA 1 cut(s) 102
BspLI GGNNCC 3 cut(s) 85, 389, 390
BspPI GGATC 3 cut(s) 78, 91, 421
BspQI GCTCTTC 1 cut(s) 236
BsrBI CCGCTC 1 cut(s) 330
BsrI ACTGG 1 cut(s) 250
BssMI GATC 4 cut(s) 83, 99, 175, 426
BssNI GRCGYC 1 cut(s) 21
Bst2UI CCWGG 2 cut(s) 361, 413
Bst4CI ACNGT 2 cut(s) 53, 406
Bst6I CTCTTC 2 cut(s) 236, 368
BstACI GRCGYC 1 cut(s) 21
BstBAI YACGTR 1 cut(s) 325
BstC8I GCNNGC 2 cut(s) 154, 350
BstDEI CTNAG 5 cut(s) 37, 182, 344, 353, 396
BstFNI CGCG 3 cut(s) 152, 169, 227
BstH2I RGCGCY 2 cut(s) 204, 437
BstHHI GCGC 4 cut(s) 171, 203, 229, 436
BstKTI GATC 4 cut(s) 86, 102, 178, 429
BstMAI GTCTC 1 cut(s) 158
BstMBI GATC 4 cut(s) 83, 99, 175, 426
BstMWI GCNNNNNNNGC 2 cut(s) 280, 354
BstNI CCWGG 2 cut(s) 361, 413
BstSCI CCNGG 4 cut(s) 206, 359, 390, 411
BstSFI CTRYAG 1 cut(s) 49
BstUI CGCG 3 cut(s) 152, 169, 227
BstV1I GCAGC 1 cut(s) 190
BstX2I RGATCY 1 cut(s) 83
BstYI RGATCY 1 cut(s) 83
BsuRI GGCC 1 cut(s) 5
BtgZI GCGATG 1 cut(s) 457
BtsIMutI CAGTG 1 cut(s) 58
Cac8I GCNNGC 2 cut(s) 154, 350
CaiI CAGNNNCTG 1 cut(s) 360
CciI TCATGA 1 cut(s) 102
CfoI GCGC 4 cut(s) 171, 203, 229, 436
Cfr13I GGNCC 2 cut(s) 363, 388
CseI GACGC 2 cut(s) 175, 233
Csp6I GTAC 2 cut(s) 160, 334
CviAII CATG 2 cut(s) 103, 477
CviJI RGCY 5 cut(s) 5, 188, 271, 348, 395
CviKI_1 RGCY 5 cut(s) 5, 188, 271, 348, 395
CviQI GTAC 2 cut(s) 160, 334
DdeI CTNAG 5 cut(s) 37, 182, 344, 353, 396
DpnI GATC 4 cut(s) 85, 101, 177, 428
DpnII GATC 4 cut(s) 83, 99, 175, 426
Eam1104I CTCTTC 2 cut(s) 236, 368
EarI CTCTTC 2 cut(s) 236, 368
EciI GGCGGA 2 cut(s) 96, 130
Eco32I GATATC 1 cut(s) 241
Eco47I GGWCC 2 cut(s) 363, 388
Eco47III AGCGCT 1 cut(s) 435
EcoO109I RGGNCCY 1 cut(s) 388
EcoRII CCWGG 2 cut(s) 359, 411
EcoRV GATATC 1 cut(s) 241
Esp3I CGTCTC 1 cut(s) 158
FaeI CATG 2 cut(s) 106, 480
FaiI YATR 3 cut(s) 14, 104, 478
FaqI GGGAC 2 cut(s) 223, 401
FatI CATG 2 cut(s) 102, 476
FauI CCCGC 2 cut(s) 297, 323
FbaI TGATCA 1 cut(s) 99
Fnu4HI GCNGC 2 cut(s) 204, 272
Fsp4HI GCNGC 2 cut(s) 204, 272
FspBI CTAG 1 cut(s) 419
GlaI GCGC 4 cut(s) 170, 202, 228, 435
GluI GCNGC 2 cut(s) 204, 272
GsaI CCCAGC 1 cut(s) 271
GsuI CTGGAG 2 cut(s) 143, 395
HaeII RGCGCY 2 cut(s) 204, 437
HaeIII GGCC 1 cut(s) 5
HapII CCGG 3 cut(s) 60, 207, 392
HgaI GACGC 2 cut(s) 175, 233
HhaI GCGC 4 cut(s) 171, 203, 229, 436
Hin1I GRCGYC 1 cut(s) 21
Hin1II CATG 2 cut(s) 106, 480
Hin6I GCGC 4 cut(s) 169, 201, 227, 434
HinP1I GCGC 4 cut(s) 169, 201, 227, 434
HincII GTYRAC 1 cut(s) 310
HindII GTYRAC 1 cut(s) 310
HinfI GANTC 3 cut(s) 118, 140, 211
HpaII CCGG 3 cut(s) 60, 207, 392
Hpy166II GTNNAC 4 cut(s) 91, 160, 310, 402
Hpy188I TCNGA 3 cut(s) 40, 185, 256
Hpy188III TCNNGA 3 cut(s) 103, 122, 424
Hpy8I GTNNAC 4 cut(s) 91, 160, 310, 402
Hpy99I CGWCG 3 cut(s) 23, 26, 227
HpyAV CCTTC 2 cut(s) 16, 100
HpyCH4III ACNGT 2 cut(s) 53, 406
HpyCH4IV ACGT 4 cut(s) 21, 279, 324, 336
HpyCH4V TGCA 1 cut(s) 283
HpyF10VI GCNNNNNNNGC 2 cut(s) 280, 354
HpyF3I CTNAG 5 cut(s) 37, 182, 344, 353, 396
HpySE526I ACGT 4 cut(s) 21, 279, 324, 336
Hsp92I GRCGYC 1 cut(s) 21
Hsp92II CATG 2 cut(s) 106, 480
HspAI GCGC 4 cut(s) 169, 201, 227, 434
KflI GGGWCCC 1 cut(s) 388
Ksp22I TGATCA 1 cut(s) 99
Kzo9I GATC 4 cut(s) 83, 99, 175, 426
LguI GCTCTTC 1 cut(s) 236
Lsp1109I GCAGC 1 cut(s) 190
MaeI CTAG 1 cut(s) 419
MaeII ACGT 4 cut(s) 21, 279, 324, 336
MaeIII GTNAC 1 cut(s) 481
MalI GATC 4 cut(s) 85, 101, 177, 428
MbiI CCGCTC 1 cut(s) 330
MboI GATC 4 cut(s) 83, 99, 175, 426
MboII GAAGA 5 cut(s) 170, 223, 226, 385, 457
MflI RGATCY 1 cut(s) 83
MluI ACGCGT 1 cut(s) 150
MlyI GAGTC 2 cut(s) 134, 205
MmeI TCCRAC 1 cut(s) 234
MnlI CCTC 3 cut(s) 67, 369, 419
MspI CCGG 3 cut(s) 60, 207, 392
MspR9I CCNGG 4 cut(s) 208, 361, 392, 413
MvaI CCWGG 2 cut(s) 361, 413
MvnI CGCG 3 cut(s) 152, 169, 227
MwoI GCNNNNNNNGC 2 cut(s) 280, 354
NciI CCSGG 2 cut(s) 208, 392
NdeII GATC 4 cut(s) 83, 99, 175, 426
NlaIII CATG 2 cut(s) 106, 480
NlaIV GGNNCC 3 cut(s) 85, 389, 390
NmuCI GTSAC 1 cut(s) 481
PagI TCATGA 1 cut(s) 102
PciSI GCTCTTC 1 cut(s) 236
PcsI WCGNNNNNNNCGW 3 cut(s) 84, 260, 444
PfeI GAWTC 1 cut(s) 118
PflMI CCANNNNNTGG 1 cut(s) 477
PkrI GCNGC 2 cut(s) 205, 273
PleI GAGTC 2 cut(s) 134, 205
PpsI GAGTC 2 cut(s) 134, 205
Ppu21I YACGTR 1 cut(s) 325
PpuMI RGGWCCY 1 cut(s) 388
Psp5II RGGWCCY 1 cut(s) 388
Psp6I CCWGG 2 cut(s) 359, 411
PspFI CCCAGC 1 cut(s) 267
PspGI CCWGG 2 cut(s) 359, 411
PspN4I GGNNCC 3 cut(s) 85, 389, 390
PspPI GGNCC 2 cut(s) 363, 388
PspPPI RGGWCCY 1 cut(s) 388
PstNI CAGNNNCTG 1 cut(s) 360
PsuI RGATCY 1 cut(s) 83
RsaI GTAC 2 cut(s) 161, 335
RsaNI GTAC 2 cut(s) 160, 334
SapI GCTCTTC 1 cut(s) 236
SatI GCNGC 2 cut(s) 204, 272
Sau3AI GATC 4 cut(s) 83, 99, 175, 426
Sau96I GGNCC 2 cut(s) 363, 388
SchI GAGTC 2 cut(s) 134, 205
ScrFI CCNGG 4 cut(s) 208, 361, 392, 413
SetI ASST 6 cut(s) 24, 282, 327, 339, 362, 417
SfcI CTRYAG 1 cut(s) 49
SinI GGWCC 2 cut(s) 363, 388
SsiI CCGC 7 cut(s) 81, 115, 272, 289, 304, 330, 454
SspMI CTAG 1 cut(s) 419
StyD4I CCNGG 4 cut(s) 206, 359, 390, 411
TaaI ACNGT 2 cut(s) 53, 406
TaiI ACGT 4 cut(s) 24, 282, 327, 339
TaqI TCGA 3 cut(s) 18, 237, 263
TauI GCSGC 1 cut(s) 274
TfiI GAWTC 1 cut(s) 118
TscAI CASTG 1 cut(s) 58
TseFI GTSAC 1 cut(s) 481
TseI GCWGC 1 cut(s) 203
Tsp45I GTSAC 1 cut(s) 481
TspDTI ATGAA 1 cut(s) 119
TspGWI ACGGA 1 cut(s) 76
TspRI CASTG 1 cut(s) 58
Van91I CCANNNNNTGG 1 cut(s) 477
VpaK11BI GGWCC 2 cut(s) 363, 388
XspI CTAG 1 cut(s) 419
ZraI GACGTC 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.