FvH4_2g30000

Coiled-coil domain-containing protein 93

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0008812
Physical Location & Seq
Forward (+)
23258173 .. 23261276
3104 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g30000.t1

Sequence Viewer

Length: 789 bp
ATGCTACAAGACAACCTCAATGAATTGAATGAGAGAAAGGTCATTGTTATGAATGAATTGCAAAGCTTAAGAGAGAGAATCGATAATGAAGGTGTTAAAGCTGTTGTGGACAAGTTGGTATTGCTTAAGAAGTCATTGAAGGAGCTTGAGAGGGAAGAAAATGAAGTTGAGTCTGTAAGTAATTCTGAATTGGAAGATGAGATTCATGATTTGGAGGAGCAGATAGAAAATGGGAGTGATAGACAGTCACTCTCTGATAGATTGAGTTGGTTGTTGAGTGAATCAGAGGAGAAAATTAATTCAGCTAAACAGGAACTTGCATCTAGATTGAGGGCAGTGCTGGCAGTACAGCGCAAGATTGATGATATTCCGTGCCAATCAGAACTTGTCCAGTATGATCACCGATTGTCAGAGTTGAATGCTCAAATTCAAGGAAAACTTCGACAAACTCGTAAATACTATGCCACGTACAACGCACTTTTGGAGATAAAGGAAATGATGCTAAAGGAAGCATCTTTGCTGAATTCAATAAGTTCACAGTTTCAAGATGCAATCACTAGTACAGATGGTCGCATGAAACTCATTAATTCAATGGAGGGAATTATGAAGGGCAGTCAACAGAAGCTAAAAAAGGTAGAACAAGGGCTTCAAGAAGAGCAAAAAGTTTGTGATTCTCTCAAAGCTAGGCATGTTGCAGCAACTGCAGAGCAAAGACGCTGTTATTCCCTCTTAAAAGCTTTTCAGGAGGAATGTGCAAAGAATGAGCTACTTCGAAAAAGTTCCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KOG2701

Protein Analysis

263

Amino Acids

30.17

Weight (kDa)

5.44

Isoelectric Point (pI)

49.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCDC93_CC PF09762 5 - 258 3.9e-47 CCDC93 coiled-coil domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 426, 523
AfaI GTAC 3 cut(s) 348, 470, 562
AflII CTTAAG 2 cut(s) 67, 125
AgsI TTSAA 8 cut(s) 28, 139, 418, 431, 528, 545, 591, 650
AhlI ACTAGT 1 cut(s) 557
AluBI AGCT 8 cut(s) 66, 101, 145, 305, 625, 683, 737, 766
AluI AGCT 8 cut(s) 66, 101, 145, 305, 625, 683, 737, 766
AlwNI CAGNNNCTG 1 cut(s) 701
ApeKI GCWGC 1 cut(s) 695
ApoI RAATTY 2 cut(s) 426, 523
AseI ATTAAT 2 cut(s) 297, 585
Asp700I GAANNNNTTC 1 cut(s) 778
AspLEI GCGC 1 cut(s) 354
AsuHPI GGTGA 1 cut(s) 392
AsuII TTCGAA 1 cut(s) 772
BbvI GCAGC 1 cut(s) 707
BccI CCATC 1 cut(s) 560
BclI TGATCA 1 cut(s) 397
BcuI ACTAGT 1 cut(s) 557
BfaI CTAG 3 cut(s) 324, 558, 684
BfmI CTRYAG 1 cut(s) 702
BfrI CTTAAG 2 cut(s) 67, 125
BisI GCNGC 1 cut(s) 696
BlsI GCNGC 1 cut(s) 697
BmsI GCATC 4 cut(s) 329, 489, 521, 538
Bpu14I TTCGAA 1 cut(s) 772
BpuEI CTTGAG 1 cut(s) 167
Bsa29I ATCGAT 1 cut(s) 81
BsaAI YACGTR 1 cut(s) 468
Bse1I ACTGG 1 cut(s) 391
BseCI ATCGAT 1 cut(s) 81
BseNI ACTGG 1 cut(s) 391
BseRI GAGGAG 2 cut(s) 230, 302
BseXI GCAGC 1 cut(s) 707
BshVI ATCGAT 1 cut(s) 81
BsmI GAATGC 1 cut(s) 424
Bsp119I TTCGAA 1 cut(s) 772
Bsp143I GATC 1 cut(s) 397
BspDI ATCGAT 1 cut(s) 81
BspHI TCATGA 1 cut(s) 205
BspMAI CTGCAG 1 cut(s) 706
BspQI GCTCTTC 1 cut(s) 648
BspT104I TTCGAA 1 cut(s) 772
BspTI CTTAAG 2 cut(s) 67, 125
BsrI ACTGG 1 cut(s) 391
BssMI GATC 1 cut(s) 397
Bst4CI ACNGT 2 cut(s) 246, 540
Bst6I CTCTTC 1 cut(s) 648
BstAFI CTTAAG 2 cut(s) 67, 125
BstAPI GCANNNNNTGC 1 cut(s) 701
BstBAI YACGTR 1 cut(s) 468
BstBI TTCGAA 1 cut(s) 772
BstC8I GCNNGC 1 cut(s) 342
BstHHI GCGC 1 cut(s) 354
BstKTI GATC 1 cut(s) 400
BstMBI GATC 1 cut(s) 397
BstMWI GCNNNNNNNGC 2 cut(s) 341, 701
BstNSI RCATGY 1 cut(s) 692
BstSFI CTRYAG 1 cut(s) 702
BstV1I GCAGC 1 cut(s) 707
Bsu15I ATCGAT 1 cut(s) 81
BsuTUI ATCGAT 1 cut(s) 81
BtsI GCAGTG 1 cut(s) 342
BtsIMutI CAGTG 1 cut(s) 342
Cac8I GCNNGC 1 cut(s) 342
CaiI CAGNNNCTG 1 cut(s) 701
CciI TCATGA 1 cut(s) 205
CfoI GCGC 1 cut(s) 354
ClaI ATCGAT 1 cut(s) 81
CseI GACGC 1 cut(s) 723
Csp6I GTAC 3 cut(s) 347, 469, 561
CviAII CATG 3 cut(s) 206, 574, 689
CviJI RGCY 9 cut(s) 66, 101, 145, 305, 625, 646, 683, 737, 766
CviKI_1 RGCY 9 cut(s) 66, 101, 145, 305, 625, 646, 683, 737, 766
CviQI GTAC 3 cut(s) 347, 469, 561
DpnI GATC 1 cut(s) 399
DpnII GATC 1 cut(s) 397
Eam1104I CTCTTC 1 cut(s) 648
EarI CTCTTC 1 cut(s) 648
EcoRI GAATTC 1 cut(s) 523
FaeI CATG 3 cut(s) 209, 577, 692
FaiI YATR 7 cut(s) 50, 207, 396, 462, 575, 605, 690
FalI AAGNNNNNCTT 2 cut(s) 423, 455
FatI CATG 3 cut(s) 205, 573, 688
FbaI TGATCA 1 cut(s) 397
Fnu4HI GCNGC 1 cut(s) 696
Fsp4HI GCNGC 1 cut(s) 696
FspBI CTAG 3 cut(s) 324, 558, 684
GlaI GCGC 1 cut(s) 353
GluI GCNGC 1 cut(s) 696
HgaI GACGC 1 cut(s) 723
HhaI GCGC 1 cut(s) 354
Hin1II CATG 3 cut(s) 209, 577, 692
Hin6I GCGC 1 cut(s) 352
HinP1I GCGC 1 cut(s) 352
HincII GTYRAC 1 cut(s) 617
HindII GTYRAC 1 cut(s) 617
HindIII AAGCTT 2 cut(s) 64, 735
HinfI GANTC 5 cut(s) 78, 170, 202, 281, 671
HphI GGTGA 1 cut(s) 392
Hpy166II GTNNAC 3 cut(s) 109, 536, 617
Hpy188I TCNGA 5 cut(s) 187, 256, 286, 382, 412
Hpy188III TCNNGA 5 cut(s) 206, 324, 545, 650, 743
Hpy8I GTNNAC 3 cut(s) 109, 536, 617
HpyAV CCTTC 3 cut(s) 83, 133, 601
HpyCH4III ACNGT 2 cut(s) 246, 540
HpyCH4IV ACGT 1 cut(s) 467
HpyCH4V TGCA 6 cut(s) 61, 320, 551, 695, 704, 755
HpyF10VI GCNNNNNNNGC 2 cut(s) 341, 701
HpySE526I ACGT 1 cut(s) 467
Hsp92II CATG 3 cut(s) 209, 577, 692
HspAI GCGC 1 cut(s) 352
Ksp22I TGATCA 1 cut(s) 397
Kzo9I GATC 1 cut(s) 397
LguI GCTCTTC 1 cut(s) 648
LmnI GCTCC 2 cut(s) 142, 217
LpnPI CCDG 4 cut(s) 296, 326, 404, 728
Lsp1109I GCAGC 1 cut(s) 707
LweI GCATC 4 cut(s) 329, 489, 521, 538
MaeI CTAG 3 cut(s) 324, 558, 684
MaeII ACGT 1 cut(s) 467
MaeIII GTNAC 1 cut(s) 246
MalI GATC 1 cut(s) 399
MboI GATC 1 cut(s) 397
MboII GAAGA 3 cut(s) 167, 206, 665
MlyI GAGTC 1 cut(s) 179
MnlI CCTC 8 cut(s) 26, 144, 208, 280, 324, 589, 737, 739
MroXI GAANNNNTTC 1 cut(s) 778
MseI TTAA 6 cut(s) 68, 96, 126, 297, 585, 731
MslI CAYNNNNRTG 1 cut(s) 47
MspCI CTTAAG 2 cut(s) 67, 125
Mva1269I GAATGC 1 cut(s) 424
MwoI GCNNNNNNNGC 2 cut(s) 341, 701
NdeII GATC 1 cut(s) 397
NlaIII CATG 3 cut(s) 209, 577, 692
NmuCI GTSAC 1 cut(s) 246
NspI RCATGY 1 cut(s) 692
NspV TTCGAA 1 cut(s) 772
PagI TCATGA 1 cut(s) 205
PciSI GCTCTTC 1 cut(s) 648
PcsI WCGNNNNNNNCGW 1 cut(s) 448
PctI GAATGC 1 cut(s) 424
PdmI GAANNNNTTC 1 cut(s) 778
PfeI GAWTC 4 cut(s) 78, 202, 281, 671
PkrI GCNGC 1 cut(s) 697
PleI GAGTC 1 cut(s) 178
PpsI GAGTC 1 cut(s) 178
Ppu21I YACGTR 1 cut(s) 468
PshBI ATTAAT 2 cut(s) 297, 585
PstI CTGCAG 1 cut(s) 706
PstNI CAGNNNCTG 1 cut(s) 701
RsaI GTAC 3 cut(s) 348, 470, 562
RsaNI GTAC 3 cut(s) 347, 469, 561
RseI CAYNNNNRTG 1 cut(s) 47
SapI GCTCTTC 1 cut(s) 648
SaqAI TTAA 6 cut(s) 68, 96, 126, 297, 585, 731
SatI GCNGC 1 cut(s) 696
Sau3AI GATC 1 cut(s) 397
SchI GAGTC 1 cut(s) 179
SfaNI GCATC 4 cut(s) 329, 489, 521, 538
SfcI CTRYAG 1 cut(s) 702
SfuI TTCGAA 1 cut(s) 772
SmiMI CAYNNNNRTG 1 cut(s) 47
SmlI CTYRAG 3 cut(s) 67, 125, 146
SmoI CTYRAG 3 cut(s) 67, 125, 146
SpeI ACTAGT 1 cut(s) 557
SspMI CTAG 3 cut(s) 324, 558, 684
TaaI ACNGT 2 cut(s) 246, 540
TaiI ACGT 1 cut(s) 470
TaqI TCGA 3 cut(s) 81, 442, 772
TatI WGTACW 2 cut(s) 346, 560
TfiI GAWTC 4 cut(s) 78, 202, 281, 671
Tru1I TTAA 6 cut(s) 68, 96, 126, 297, 585, 731
Tru9I TTAA 6 cut(s) 68, 96, 126, 297, 585, 731
TscAI CASTG 1 cut(s) 342
TseFI GTSAC 1 cut(s) 246
TseI GCWGC 1 cut(s) 695
Tsp45I GTSAC 1 cut(s) 246
TspDTI ATGAA 8 cut(s) 36, 65, 69, 102, 177, 194, 590, 620
TspGWI ACGGA 1 cut(s) 360
TspRI CASTG 1 cut(s) 342
Vha464I CTTAAG 2 cut(s) 67, 125
VspI ATTAAT 2 cut(s) 297, 585
XapI RAATTY 2 cut(s) 426, 523
XbaI TCTAGA 1 cut(s) 323
XceI RCATGY 1 cut(s) 692
XmnI GAANNNNTTC 1 cut(s) 778
XspI CTAG 3 cut(s) 324, 558, 684
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.