MD08G1138600.v1.1

Coiled-coil domain-containing protein 93

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0008812
Physical Location & Seq
Reverse (-)
13287031 .. 13288355
1325 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1138600.v1.1.491

Sequence Viewer

Length: 564 bp
ATGTCAAAAGACAATCTCAACAAATTGATTCAGAAGAAGGTAAGTTTCACGAACGAATTGCAAAGTTTGAGGGAAAAAATCGAAAAGGGAGGCGCTGAAACTGCGGTTGAAAAATTGGTATCGCTCAAGCAGTCACTGAAGGAGTTGGAAAGGCAAGAGCTTGAAGTCCAGTCTCTTAGCAATTCCGTATTGGAAGCCGAAGTTCGTAGATTGGAGGACCAAATAGAAAATGGGTTTGATAGTGAGGATGTTCCTGATGAACTGGATCGTTTGTTGAGTGAATCGGAGGCGAAAATCGGTTCGGCGAAAAGGGAACTTGCAGCTAAACTAAGGGCAGTGTTGGCAGTACAGCGCCAGATTGATGATGTTCCTTCGCAATCTGAGCTCGTCCACACTTTTGGGAACGTTCTGAAAGTGCTTCAAGTGCTTTTTTCAGGAAACAATCGGATTTTTATAGAACTTCGATGTGCTTCTAATAGAAGTGGTTCCTGTAAAAGCGCTTATAAGCTGAAGTACATTCCTGCGAAGCATTTCCAAACAGGCCGTAAGAATAACGCTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KOG2701

Protein Analysis

188

Amino Acids

21.04

Weight (kDa)

7.72

Isoelectric Point (pI)

53.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCDC93_CC PF09762 3 - 130 1.9e-07 CCDC93 coiled-coil domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 504
AciI CCGC 1 cut(s) 104
AclI AACGTT 1 cut(s) 405
AclWI GGATC 1 cut(s) 273
AcuI CTGAAG 2 cut(s) 158, 530
AfaI GTAC 2 cut(s) 348, 515
AfeI AGCGCT 1 cut(s) 499
AgsI TTSAA 3 cut(s) 110, 164, 422
AluBI AGCT 4 cut(s) 160, 323, 385, 508
AluI AGCT 4 cut(s) 160, 323, 385, 508
Alw21I GWGCWC 1 cut(s) 387
Alw26I GTCTC 1 cut(s) 177
AlwI GGATC 1 cut(s) 273
AlwNI CAGNNNCTG 1 cut(s) 136
Aor51HI AGCGCT 1 cut(s) 499
AoxI GGCC 1 cut(s) 541
ApeKI GCWGC 1 cut(s) 320
Asp700I GAANNNNTTC 2 cut(s) 484, 530
AspLEI GCGC 3 cut(s) 95, 354, 500
AspS9I GGNCC 1 cut(s) 217
AvaII GGWCC 1 cut(s) 217
BanII GRGCYC 1 cut(s) 387
Bbv12I GWGCWC 1 cut(s) 387
BbvI GCAGC 1 cut(s) 332
BceAI ACGGC 1 cut(s) 528
BcgI CGANNNNNNTGC 2 cut(s) 40, 74
BcoDI GTCTC 1 cut(s) 177
BfoI RGCGCY 3 cut(s) 96, 355, 501
BisI GCNGC 1 cut(s) 321
BlsI GCNGC 1 cut(s) 322
Bme18I GGWCC 1 cut(s) 217
BmgT120I GGNCC 1 cut(s) 217
BmiI GGNNCC 1 cut(s) 487
BpuEI CTTGAG 1 cut(s) 110
Bse1I ACTGG 2 cut(s) 169, 267
BseGI GGATG 1 cut(s) 253
BseMII CTCAG 1 cut(s) 372
BseNI ACTGG 2 cut(s) 169, 267
BseXI GCAGC 1 cut(s) 332
BshFI GGCC 1 cut(s) 543
BsiHKAI GWGCWC 1 cut(s) 387
BsmAI GTCTC 1 cut(s) 177
BsnI GGCC 1 cut(s) 543
Bsp1286I GDGCHC 1 cut(s) 387
Bsp143I GATC 1 cut(s) 265
BspACI CCGC 1 cut(s) 104
BspANI GGCC 1 cut(s) 543
BspCNI CTCAG 1 cut(s) 373
BspLI GGNNCC 1 cut(s) 487
BspPI GGATC 1 cut(s) 273
BsrI ACTGG 2 cut(s) 169, 267
BssMI GATC 1 cut(s) 265
BstDEI CTNAG 3 cut(s) 176, 329, 381
BstF5I GGATG 1 cut(s) 253
BstH2I RGCGCY 3 cut(s) 96, 355, 501
BstHHI GCGC 3 cut(s) 95, 354, 500
BstKTI GATC 1 cut(s) 268
BstMAI GTCTC 1 cut(s) 177
BstMBI GATC 1 cut(s) 265
BstMWI GCNNNNNNNGC 4 cut(s) 101, 341, 382, 424
BstV1I GCAGC 1 cut(s) 332
BstXI CCANNNNNNTGG 1 cut(s) 398
BsuRI GGCC 1 cut(s) 543
BtsCI GGATG 1 cut(s) 253
BtsI GCAGTG 1 cut(s) 342
BtsIMutI CAGTG 2 cut(s) 134, 342
CaiI CAGNNNCTG 1 cut(s) 136
CfoI GCGC 3 cut(s) 95, 354, 500
Cfr13I GGNCC 1 cut(s) 217
Csp6I GTAC 2 cut(s) 347, 514
CviJI RGCY 6 cut(s) 160, 197, 323, 385, 508, 543
CviKI_1 RGCY 6 cut(s) 160, 197, 323, 385, 508, 543
CviQI GTAC 2 cut(s) 347, 514
DdeI CTNAG 3 cut(s) 176, 329, 381
DpnI GATC 1 cut(s) 267
DpnII GATC 1 cut(s) 265
Ecl136II GAGCTC 1 cut(s) 385
Eco24I GRGCYC 1 cut(s) 387
Eco47I GGWCC 1 cut(s) 217
Eco47III AGCGCT 1 cut(s) 499
Eco53kI GAGCTC 1 cut(s) 385
Eco57I CTGAAG 2 cut(s) 158, 530
EcoICRI GAGCTC 1 cut(s) 385
EcoT38I GRGCYC 1 cut(s) 387
FaiI YATR 2 cut(s) 455, 504
Fnu4HI GCNGC 1 cut(s) 321
FokI GGATG 1 cut(s) 260
FriOI GRGCYC 1 cut(s) 387
Fsp4HI GCNGC 1 cut(s) 321
GlaI GCGC 3 cut(s) 94, 353, 499
GluI GCNGC 1 cut(s) 321
HaeII RGCGCY 3 cut(s) 96, 355, 501
HaeIII GGCC 1 cut(s) 543
HhaI GCGC 3 cut(s) 95, 354, 500
Hin6I GCGC 3 cut(s) 93, 352, 498
HinP1I GCGC 3 cut(s) 93, 352, 498
HinfI GANTC 2 cut(s) 28, 281
Hpy166II GTNNAC 1 cut(s) 391
Hpy188I TCNGA 5 cut(s) 33, 286, 382, 411, 447
Hpy188III TCNNGA 3 cut(s) 49, 254, 435
Hpy8I GTNNAC 1 cut(s) 391
HpyAV CCTTC 3 cut(s) 31, 133, 381
HpyCH4IV ACGT 1 cut(s) 405
HpyCH4V TGCA 2 cut(s) 61, 320
HpyF10VI GCNNNNNNNGC 4 cut(s) 101, 341, 382, 424
HpyF3I CTNAG 3 cut(s) 176, 329, 381
HpySE526I ACGT 1 cut(s) 405
HspAI GCGC 3 cut(s) 93, 352, 498
Kzo9I GATC 1 cut(s) 265
LpnPI CCDG 8 cut(s) 182, 248, 267, 368, 420, 502, 525, 534
Lsp1109I GCAGC 1 cut(s) 332
MaeII ACGT 1 cut(s) 405
MaeIII GTNAC 1 cut(s) 132
MalI GATC 1 cut(s) 267
MboI GATC 1 cut(s) 265
MboII GAAGA 1 cut(s) 46
MhlI GDGCHC 1 cut(s) 387
MluCI AATT 4 cut(s) 23, 56, 113, 181
MmeI TCCRAC 1 cut(s) 126
MnlI CCTC 5 cut(s) 63, 83, 208, 238, 280
MroXI GAANNNNTTC 2 cut(s) 484, 530
MwoI GCNNNNNNNGC 4 cut(s) 101, 341, 382, 424
NdeII GATC 1 cut(s) 265
NlaIV GGNNCC 1 cut(s) 487
NmuCI GTSAC 1 cut(s) 132
PdmI GAANNNNTTC 2 cut(s) 484, 530
PfeI GAWTC 2 cut(s) 28, 281
PkrI GCNGC 1 cut(s) 322
PsiI TTATAA 1 cut(s) 504
Psp124BI GAGCTC 1 cut(s) 387
Psp1406I AACGTT 1 cut(s) 405
PspN4I GGNNCC 1 cut(s) 487
PspPI GGNCC 1 cut(s) 217
PstNI CAGNNNCTG 1 cut(s) 136
RsaI GTAC 2 cut(s) 348, 515
RsaNI GTAC 2 cut(s) 347, 514
SacI GAGCTC 1 cut(s) 387
SatI GCNGC 1 cut(s) 321
Sau3AI GATC 1 cut(s) 265
Sau96I GGNCC 1 cut(s) 217
SduI GDGCHC 1 cut(s) 387
SetI ASST 6 cut(s) 42, 162, 325, 387, 408, 510
SinI GGWCC 1 cut(s) 217
SmlI CTYRAG 1 cut(s) 125
SmoI CTYRAG 1 cut(s) 125
Sse9I AATT 4 cut(s) 23, 56, 113, 181
SsiI CCGC 1 cut(s) 104
SstI GAGCTC 1 cut(s) 387
TaiI ACGT 1 cut(s) 408
TaqI TCGA 2 cut(s) 81, 463
TasI AATT 4 cut(s) 23, 56, 113, 181
TatI WGTACW 2 cut(s) 346, 513
TfiI GAWTC 2 cut(s) 28, 281
TscAI CASTG 2 cut(s) 141, 342
TseFI GTSAC 1 cut(s) 132
TseI GCWGC 1 cut(s) 320
Tsp45I GTSAC 1 cut(s) 132
TspDTI ATGAA 1 cut(s) 273
TspGWI ACGGA 1 cut(s) 175
TspRI CASTG 2 cut(s) 141, 342
VpaK11BI GGWCC 1 cut(s) 217
XcmI CCANNNNNNNNNTGG 1 cut(s) 227
XmnI GAANNNNTTC 2 cut(s) 484, 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.