Rh6BG529300

Coiled-coil domain-containing protein 93

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0008812
Physical Location & Seq
Reverse (-)
71990780 .. 71994280
3501 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG529300.1

Sequence Viewer

Length: 684 bp
ATGAATGAATTGCAAAGCTTAAGAGAGAAAATTGATAATGAAGGTGCTAAAGCCGTGGTGGACAAGTTGGTATCGCTTAAGAAGTCATTGAAGGAGCTGGAGAGGGAAGAAAATGAAGTTGAGTCTGTAAGTAATTCTGAATTGGATGCTGAAGTTCGTGAATTGGAGGAGCAAATAGAAAATGGGTATGATAGTCAATCACTCTCTGGTAAATTGAATCGGATGTTGAGTGAATCAGAGGAGAAAATTGATTTAGCTAAAAAGGAACTTGCAGCTAGATTAAGGGCAGTGTTGGCAGTACAGCGCAAGATTGATGATGTTCCATGCCAATCAGAATTTGTCCAGTATGATCACCGGCTTTCAGAATTGAATGCTCAAATTCAAGGAAAACTTCGACAGACTCGTAAATACTATGCCACATACAATGCACTTTTGGAGATAAAAGAAATGATGCTAAAGGAAGCATCTTTGCTGAATTCAATAAGTTCGCAGTTTCAAGATGCATTCACTAGCATGGATGGTCGCATGAAACTCATCAATTCGATGGAGGGAATTATGAAGGGCAGTCAACAGGTAAATGTCAAAATGTCGTCAACTTGTGTGCATGTTTTCTGTTGCAGATTTAAAGAACACCCAAACTGTGCCTTGAAAGTATTCTGCAATTCTTGCAGAGGTAGAATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KOG2701

Protein Analysis

227

Amino Acids

25.94

Weight (kDa)

6.05

Isoelectric Point (pI)

37.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCDC93_CC PF09762 2 - 196 7e-34 CCDC93 coiled-coil domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 4 cut(s) 335, 378, 475, 678
AcuI CTGAAG 1 cut(s) 171
AfaI GTAC 1 cut(s) 300
AflII CTTAAG 2 cut(s) 19, 77
AgsI TTSAA 7 cut(s) 91, 217, 370, 383, 480, 497, 649
AluBI AGCT 4 cut(s) 18, 97, 257, 275
AluI AGCT 4 cut(s) 18, 97, 257, 275
ApeKI GCWGC 1 cut(s) 272
ApoI RAATTY 4 cut(s) 335, 378, 475, 678
Asp700I GAANNNNTTC 1 cut(s) 653
AspLEI GCGC 1 cut(s) 306
AsuHPI GGTGA 1 cut(s) 344
BbvI GCAGC 1 cut(s) 284
BccI CCATC 2 cut(s) 512, 538
BceAI ACGGC 1 cut(s) 38
BclI TGATCA 1 cut(s) 349
BfaI CTAG 2 cut(s) 276, 510
BfrI CTTAAG 2 cut(s) 19, 77
BisI GCNGC 1 cut(s) 273
BlsI GCNGC 1 cut(s) 274
BmsI GCATC 4 cut(s) 136, 441, 473, 490
BpmI CTGGAG 1 cut(s) 119
BsaJI CCNNGG 1 cut(s) 54
Bse118I RCCGGY 1 cut(s) 354
Bse1I ACTGG 1 cut(s) 343
BseDI CCNNGG 1 cut(s) 54
BseGI GGATG 3 cut(s) 151, 228, 523
BseNI ACTGG 1 cut(s) 343
BseRI GAGGAG 2 cut(s) 182, 254
BseXI GCAGC 1 cut(s) 284
BsiSI CCGG 1 cut(s) 355
BsmI GAATGC 2 cut(s) 376, 503
Bsp143I GATC 1 cut(s) 349
BspTI CTTAAG 2 cut(s) 19, 77
BsrFI RCCGGY 1 cut(s) 354
BsrI ACTGG 1 cut(s) 343
BssAI RCCGGY 1 cut(s) 354
BssECI CCNNGG 1 cut(s) 54
BssMI GATC 1 cut(s) 349
Bst4CI ACNGT 1 cut(s) 641
BstAFI CTTAAG 2 cut(s) 19, 77
BstAPI GCANNNNNTGC 1 cut(s) 666
BstDSI CCRYGG 1 cut(s) 54
BstF5I GGATG 3 cut(s) 151, 228, 523
BstHHI GCGC 1 cut(s) 306
BstKTI GATC 1 cut(s) 352
BstMBI GATC 1 cut(s) 349
BstMWI GCNNNNNNNGC 2 cut(s) 293, 666
BstNSI RCATGY 1 cut(s) 608
BstV1I GCAGC 1 cut(s) 284
BtgI CCRYGG 1 cut(s) 54
BtsCI GGATG 3 cut(s) 151, 228, 523
BtsI GCAGTG 1 cut(s) 294
BtsIMutI CAGTG 1 cut(s) 294
CfoI GCGC 1 cut(s) 306
Cfr10I RCCGGY 1 cut(s) 354
Csp6I GTAC 1 cut(s) 299
CviAII CATG 4 cut(s) 324, 514, 526, 605
CviJI RGCY 6 cut(s) 18, 53, 97, 257, 275, 358
CviKI_1 RGCY 6 cut(s) 18, 53, 97, 257, 275, 358
CviQI GTAC 1 cut(s) 299
DpnI GATC 1 cut(s) 351
DpnII GATC 1 cut(s) 349
DraI TTTAAA 1 cut(s) 625
Eco57I CTGAAG 1 cut(s) 171
EcoRI GAATTC 1 cut(s) 475
EcoT22I ATGCAT 1 cut(s) 505
FaeI CATG 4 cut(s) 327, 517, 529, 608
FaiI YATR 9 cut(s) 189, 325, 348, 414, 421, 515, 527, 557, 606
FalI AAGNNNNNCTT 2 cut(s) 375, 407
FatI CATG 4 cut(s) 323, 513, 525, 604
FbaI TGATCA 1 cut(s) 349
Fnu4HI GCNGC 1 cut(s) 273
FokI GGATG 3 cut(s) 158, 235, 530
Fsp4HI GCNGC 1 cut(s) 273
FspBI CTAG 2 cut(s) 276, 510
GlaI GCGC 1 cut(s) 305
GluI GCNGC 1 cut(s) 273
GsuI CTGGAG 1 cut(s) 119
HapII CCGG 1 cut(s) 355
HhaI GCGC 1 cut(s) 306
Hin1II CATG 4 cut(s) 327, 517, 529, 608
Hin6I GCGC 1 cut(s) 304
HinP1I GCGC 1 cut(s) 304
HincII GTYRAC 2 cut(s) 569, 594
HindII GTYRAC 2 cut(s) 569, 594
HindIII AAGCTT 1 cut(s) 16
HinfI GANTC 4 cut(s) 122, 217, 233, 400
HpaII CCGG 1 cut(s) 355
HphI GGTGA 1 cut(s) 344
Hpy166II GTNNAC 3 cut(s) 61, 569, 594
Hpy188I TCNGA 5 cut(s) 139, 222, 238, 334, 364
Hpy188III TCNNGA 2 cut(s) 158, 497
Hpy8I GTNNAC 3 cut(s) 61, 569, 594
HpyAV CCTTC 3 cut(s) 35, 85, 553
HpyCH4III ACNGT 1 cut(s) 641
HpyCH4V TGCA 8 cut(s) 13, 272, 428, 503, 604, 618, 660, 669
HpyF10VI GCNNNNNNNGC 2 cut(s) 293, 666
Hsp92II CATG 4 cut(s) 327, 517, 529, 608
HspAI GCGC 1 cut(s) 304
Ksp22I TGATCA 1 cut(s) 349
Kzo9I GATC 1 cut(s) 349
LmnI GCTCC 2 cut(s) 94, 169
LpnPI CCDG 5 cut(s) 83, 192, 356, 368, 557
Lsp1109I GCAGC 1 cut(s) 284
LweI GCATC 4 cut(s) 136, 441, 473, 490
MaeI CTAG 2 cut(s) 276, 510
MalI GATC 1 cut(s) 351
MboI GATC 1 cut(s) 349
MboII GAAGA 1 cut(s) 119
MlyI GAGTC 2 cut(s) 131, 394
MnlI CCTC 5 cut(s) 96, 160, 232, 541, 665
Mph1103I ATGCAT 1 cut(s) 505
MroXI GAANNNNTTC 1 cut(s) 653
MseI TTAA 4 cut(s) 20, 78, 281, 624
MslI CAYNNNNRTG 1 cut(s) 512
MspCI CTTAAG 2 cut(s) 19, 77
MspI CCGG 1 cut(s) 355
Mva1269I GAATGC 2 cut(s) 376, 503
MwoI GCNNNNNNNGC 2 cut(s) 293, 666
NdeII GATC 1 cut(s) 349
NlaIII CATG 4 cut(s) 327, 517, 529, 608
NsiI ATGCAT 1 cut(s) 505
NspI RCATGY 1 cut(s) 608
PcsI WCGNNNNNNNCGW 1 cut(s) 400
PctI GAATGC 2 cut(s) 376, 503
PdmI GAANNNNTTC 1 cut(s) 653
PfeI GAWTC 2 cut(s) 217, 233
PkrI GCNGC 1 cut(s) 274
PleI GAGTC 2 cut(s) 130, 394
PpsI GAGTC 2 cut(s) 130, 394
RsaI GTAC 1 cut(s) 300
RsaNI GTAC 1 cut(s) 299
RseI CAYNNNNRTG 1 cut(s) 512
SaqAI TTAA 4 cut(s) 20, 78, 281, 624
SatI GCNGC 1 cut(s) 273
Sau3AI GATC 1 cut(s) 349
SchI GAGTC 2 cut(s) 131, 394
SetI ASST 7 cut(s) 20, 46, 99, 259, 277, 576, 676
SfaNI GCATC 4 cut(s) 136, 441, 473, 490
SmiMI CAYNNNNRTG 1 cut(s) 512
SmlI CTYRAG 2 cut(s) 19, 77
SmoI CTYRAG 2 cut(s) 19, 77
SspMI CTAG 2 cut(s) 276, 510
TaaI ACNGT 1 cut(s) 641
TaqI TCGA 2 cut(s) 394, 542
TatI WGTACW 1 cut(s) 298
TfiI GAWTC 2 cut(s) 217, 233
Tru1I TTAA 4 cut(s) 20, 78, 281, 624
Tru9I TTAA 4 cut(s) 20, 78, 281, 624
TscAI CASTG 1 cut(s) 294
TseI GCWGC 1 cut(s) 272
TspDTI ATGAA 6 cut(s) 17, 21, 54, 129, 542, 572
TspRI CASTG 1 cut(s) 294
Vha464I CTTAAG 2 cut(s) 19, 77
XapI RAATTY 4 cut(s) 335, 378, 475, 678
XceI RCATGY 1 cut(s) 608
XmnI GAANNNNTTC 1 cut(s) 653
XspI CTAG 2 cut(s) 276, 510
Zsp2I ATGCAT 1 cut(s) 505
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.