Rw6G044970

Coiled-coil domain-containing protein 93

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0008812
Physical Location & Seq
Reverse (-)
68075805 .. 68079066
3262 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G044970.1

Sequence Viewer

Length: 654 bp
ATGCTACAAGACAACCAGAATGAATTGATTGAGAGAAAGGTCACTGTTATGGATGAATTGCAAAGCTTAAAAGAGAAAATTGATAATGAAGGTGCTAAAGCCGTGGTGTACAAGTTGGTATCGCTTAAGAAGTCATTGAAGGAGCTGGAGAGGGAAGAAAATGAAGTTGAGTCTGTAAGTAATTCTGAATTGGATGCTGAAGTTCGTGAATTGGAGGAGCAAATAGAAAATGGTAATGATAGTCAATCACTCTCTGATAAATTGAATCGGATGTTGAGTGAATCAGAGGAGAAAATTGATTTAGCTAAAAAGGAACTTGCAGCTAGATTAAGGGCAGTGTTGGCAGTACAGCGCAAGATTGATGATGTTCCATGCCAATCAGAATTCGTCCAGTATGATCACCGGCTTTTAGAATTGAATGCTCAAATTCAAGGAAAACTTCGACAGACTCGTAAATACTATGCCACATACAATGCACTTTTGGAGATAAAAGAAATGATGCTAAAGGAAGCATCTTTGCTGAATTCAATTAGTTCGCAGGTATGGATAAAAAGAACTTCACTGCACATTTACCCATCAGCATCCTCTTACCTGTTCTGTTTTTTTAGTAGATGTACGTGTAGATGTCAGAACCTTTTTATGGTTATTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KOG2701

Protein Analysis

217

Amino Acids

25.17

Weight (kDa)

5.35

Isoelectric Point (pI)

43.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCDC93_CC PF09762 14 - 181 5.3e-27 CCDC93 coiled-coil domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 529
AcsI RAATTY 3 cut(s) 383, 426, 523
AcuI CTGAAG 1 cut(s) 219
AfaI GTAC 3 cut(s) 110, 348, 616
AfiI CCNNNNNNNGG 1 cut(s) 640
AflII CTTAAG 1 cut(s) 125
AflIII ACRYGT 1 cut(s) 617
AgsI TTSAA 5 cut(s) 139, 265, 418, 431, 528
AluBI AGCT 4 cut(s) 66, 145, 305, 323
AluI AGCT 4 cut(s) 66, 145, 305, 323
ApeKI GCWGC 1 cut(s) 320
ApoI RAATTY 3 cut(s) 383, 426, 523
AspLEI GCGC 1 cut(s) 354
AsuHPI GGTGA 1 cut(s) 392
BbvI GCAGC 1 cut(s) 332
BccI CCATC 1 cut(s) 583
BceAI ACGGC 1 cut(s) 86
BclI TGATCA 1 cut(s) 397
BfaI CTAG 1 cut(s) 324
BfrI CTTAAG 1 cut(s) 125
BfuAI ACCTGC 1 cut(s) 529
BisI GCNGC 1 cut(s) 321
BlsI GCNGC 1 cut(s) 322
BmsI GCATC 4 cut(s) 184, 489, 521, 590
BpmI CTGGAG 1 cut(s) 167
BsaAI YACGTR 1 cut(s) 618
BsaJI CCNNGG 1 cut(s) 102
Bsc4I CCNNNNNNNGG 1 cut(s) 640
Bse118I RCCGGY 1 cut(s) 402
Bse1I ACTGG 1 cut(s) 391
BseDI CCNNGG 1 cut(s) 102
BseGI GGATG 4 cut(s) 58, 199, 276, 581
BseLI CCNNNNNNNGG 1 cut(s) 640
BseNI ACTGG 1 cut(s) 391
BseRI GAGGAG 2 cut(s) 230, 302
BseXI GCAGC 1 cut(s) 332
BsgI GTGCAG 1 cut(s) 548
BsiSI CCGG 1 cut(s) 403
BslI CCNNNNNNNGG 1 cut(s) 640
BsmI GAATGC 1 cut(s) 424
Bsp1407I TGTACA 1 cut(s) 108
Bsp143I GATC 1 cut(s) 397
BspMI ACCTGC 1 cut(s) 529
BspTI CTTAAG 1 cut(s) 125
BsrFI RCCGGY 1 cut(s) 402
BsrGI TGTACA 1 cut(s) 108
BsrI ACTGG 1 cut(s) 391
BssAI RCCGGY 1 cut(s) 402
BssECI CCNNGG 1 cut(s) 102
BssMI GATC 1 cut(s) 397
Bst4CI ACNGT 1 cut(s) 46
BstAFI CTTAAG 1 cut(s) 125
BstAUI TGTACA 1 cut(s) 108
BstBAI YACGTR 1 cut(s) 618
BstDSI CCRYGG 1 cut(s) 102
BstF5I GGATG 4 cut(s) 58, 199, 276, 581
BstHHI GCGC 1 cut(s) 354
BstKTI GATC 1 cut(s) 400
BstMBI GATC 1 cut(s) 397
BstMWI GCNNNNNNNGC 1 cut(s) 341
BstV1I GCAGC 1 cut(s) 332
BtgI CCRYGG 1 cut(s) 102
BtsCI GGATG 4 cut(s) 58, 199, 276, 581
BtsI GCAGTG 2 cut(s) 342, 560
BtsIMutI CAGTG 3 cut(s) 42, 342, 560
BveI ACCTGC 1 cut(s) 529
CfoI GCGC 1 cut(s) 354
Cfr10I RCCGGY 1 cut(s) 402
Csp6I GTAC 3 cut(s) 109, 347, 615
CviAII CATG 1 cut(s) 372
CviJI RGCY 6 cut(s) 66, 101, 145, 305, 323, 406
CviKI_1 RGCY 6 cut(s) 66, 101, 145, 305, 323, 406
CviQI GTAC 3 cut(s) 109, 347, 615
DpnI GATC 1 cut(s) 399
DpnII GATC 1 cut(s) 397
Eco57I CTGAAG 1 cut(s) 219
EcoRI GAATTC 2 cut(s) 383, 523
FaeI CATG 1 cut(s) 375
FaiI YATR 7 cut(s) 50, 373, 396, 462, 469, 544, 641
FalI AAGNNNNNCTT 2 cut(s) 423, 455
FatI CATG 1 cut(s) 371
FbaI TGATCA 1 cut(s) 397
Fnu4HI GCNGC 1 cut(s) 321
FokI GGATG 4 cut(s) 65, 206, 283, 568
Fsp4HI GCNGC 1 cut(s) 321
FspBI CTAG 1 cut(s) 324
GlaI GCGC 1 cut(s) 353
GluI GCNGC 1 cut(s) 321
GsuI CTGGAG 1 cut(s) 167
HapII CCGG 1 cut(s) 403
HhaI GCGC 1 cut(s) 354
Hin1II CATG 1 cut(s) 375
Hin6I GCGC 1 cut(s) 352
HinP1I GCGC 1 cut(s) 352
HindIII AAGCTT 1 cut(s) 64
HinfI GANTC 4 cut(s) 170, 265, 281, 448
HpaII CCGG 1 cut(s) 403
HphI GGTGA 1 cut(s) 392
Hpy166II GTNNAC 1 cut(s) 109
Hpy188I TCNGA 6 cut(s) 187, 256, 270, 286, 382, 630
Hpy188III TCNNGA 1 cut(s) 206
Hpy8I GTNNAC 1 cut(s) 109
HpyAV CCTTC 2 cut(s) 83, 133
HpyCH4III ACNGT 1 cut(s) 46
HpyCH4IV ACGT 1 cut(s) 617
HpyCH4V TGCA 4 cut(s) 61, 320, 476, 565
HpyF10VI GCNNNNNNNGC 1 cut(s) 341
HpySE526I ACGT 1 cut(s) 617
Hsp92II CATG 1 cut(s) 375
HspAI GCGC 1 cut(s) 352
Ksp22I TGATCA 1 cut(s) 397
Kzo9I GATC 1 cut(s) 397
LmnI GCTCC 2 cut(s) 142, 217
LpnPI CCDG 6 cut(s) 29, 131, 404, 416, 524, 605
Lsp1109I GCAGC 1 cut(s) 332
LweI GCATC 4 cut(s) 184, 489, 521, 590
MaeI CTAG 1 cut(s) 324
MaeII ACGT 1 cut(s) 617
MaeIII GTNAC 1 cut(s) 40
MalI GATC 1 cut(s) 399
MboI GATC 1 cut(s) 397
MboII GAAGA 1 cut(s) 167
MlyI GAGTC 2 cut(s) 179, 442
MnlI CCTC 4 cut(s) 144, 208, 280, 595
MseI TTAA 3 cut(s) 68, 126, 329
MslI CAYNNNNRTG 1 cut(s) 47
MspCI CTTAAG 1 cut(s) 125
MspI CCGG 1 cut(s) 403
Mva1269I GAATGC 1 cut(s) 424
MwoI GCNNNNNNNGC 1 cut(s) 341
NdeII GATC 1 cut(s) 397
NlaIII CATG 1 cut(s) 375
NmuCI GTSAC 1 cut(s) 40
PcsI WCGNNNNNNNCGW 1 cut(s) 448
PctI GAATGC 1 cut(s) 424
PfeI GAWTC 2 cut(s) 265, 281
PkrI GCNGC 1 cut(s) 322
PleI GAGTC 2 cut(s) 178, 442
PpsI GAGTC 2 cut(s) 178, 442
Ppu21I YACGTR 1 cut(s) 618
RsaI GTAC 3 cut(s) 110, 348, 616
RsaNI GTAC 3 cut(s) 109, 347, 615
RseI CAYNNNNRTG 1 cut(s) 47
SaqAI TTAA 3 cut(s) 68, 126, 329
SatI GCNGC 1 cut(s) 321
Sau3AI GATC 1 cut(s) 397
SchI GAGTC 2 cut(s) 179, 442
SfaNI GCATC 4 cut(s) 184, 489, 521, 590
SmiMI CAYNNNNRTG 1 cut(s) 47
SmlI CTYRAG 1 cut(s) 125
SmoI CTYRAG 1 cut(s) 125
SspMI CTAG 1 cut(s) 324
TaaI ACNGT 1 cut(s) 46
TaiI ACGT 1 cut(s) 620
TaqI TCGA 1 cut(s) 442
TatI WGTACW 2 cut(s) 108, 346
TfiI GAWTC 2 cut(s) 265, 281
Tru1I TTAA 3 cut(s) 68, 126, 329
Tru9I TTAA 3 cut(s) 68, 126, 329
TscAI CASTG 3 cut(s) 49, 342, 567
TseFI GTSAC 1 cut(s) 40
TseI GCWGC 1 cut(s) 320
Tsp45I GTSAC 1 cut(s) 40
TspDTI ATGAA 4 cut(s) 36, 69, 102, 177
TspRI CASTG 3 cut(s) 49, 342, 567
Vha464I CTTAAG 1 cut(s) 125
XapI RAATTY 3 cut(s) 383, 426, 523
XspI CTAG 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.