MD08G1138500.v1.1

Coiled-coil domain-containing protein 93

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0008812
Physical Location & Seq
Reverse (-)
13284839 .. 13287029
2191 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1138500.v1.1.491

Sequence Viewer

Length: 309 bp
ATGCTGAAGGAAACATCATTGTTGAATTCAATAAGTTCACAGTTTCAAGAAGCAATCAATAGCACTGACGGTCGCATGAAACTTATCAACTCCATGGAGGGAATCATAAAGGGCAGTCAACAGAAACTTCGAAAGGTACAACTTGGGCTTCAAGAAGAGCAAAAAGTTTGTGATGCTCTCAAGGAAAAGTATTTTGCAGCAAGTGCAGAGCAAAGGCACTGTTATTCACTCTTAAAAGCTCTTCAGGAGGAATGTACAAAGAATGAGGTACTCCGAAGAAGTTCTGCTTCAAACATCTCCAGAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KOG2701

Protein Analysis

103

Amino Acids

11.55

Weight (kDa)

8.84

Isoelectric Point (pI)

63.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCDC93_CC PF09762 3 - 92 6.8e-19 CCDC93 coiled-coil domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 25
AcuI CTGAAG 2 cut(s) 26, 227
AfaI GTAC 3 cut(s) 138, 256, 270
AgsI TTSAA 5 cut(s) 25, 30, 47, 152, 291
AluBI AGCT 1 cut(s) 239
AluI AGCT 1 cut(s) 239
ApeKI GCWGC 1 cut(s) 197
ApoI RAATTY 1 cut(s) 25
Asp700I GAANNNNTTC 1 cut(s) 280
AsuII TTCGAA 1 cut(s) 130
BbvI GCAGC 1 cut(s) 209
BisI GCNGC 1 cut(s) 198
BlsI GCNGC 1 cut(s) 199
BmsI GCATC 1 cut(s) 163
BpmI CTGGAG 1 cut(s) 283
Bpu14I TTCGAA 1 cut(s) 130
BpuEI CTTGAG 1 cut(s) 164
BsaJI CCNNGG 1 cut(s) 93
BseDI CCNNGG 1 cut(s) 93
BseXI GCAGC 1 cut(s) 209
BsgI GTGCAG 1 cut(s) 225
Bsh1285I CGRYCG 1 cut(s) 73
BsiEI CGRYCG 1 cut(s) 73
Bsp119I TTCGAA 1 cut(s) 130
Bsp1407I TGTACA 1 cut(s) 254
Bsp19I CCATGG 1 cut(s) 93
BspQI GCTCTTC 2 cut(s) 150, 246
BspT104I TTCGAA 1 cut(s) 130
BsrGI TGTACA 1 cut(s) 254
BssECI CCNNGG 1 cut(s) 93
BssT1I CCWWGG 1 cut(s) 93
Bst4CI ACNGT 3 cut(s) 42, 71, 221
Bst6I CTCTTC 2 cut(s) 150, 246
BstAPI GCANNNNNTGC 1 cut(s) 203
BstAUI TGTACA 1 cut(s) 254
BstBI TTCGAA 1 cut(s) 130
BstDSI CCRYGG 1 cut(s) 93
BstMCI CGRYCG 1 cut(s) 73
BstMWI GCNNNNNNNGC 1 cut(s) 203
BstV1I GCAGC 1 cut(s) 209
BtgI CCRYGG 1 cut(s) 93
BtsIMutI CAGTG 2 cut(s) 63, 217
Csp6I GTAC 3 cut(s) 137, 255, 269
CviAII CATG 2 cut(s) 76, 94
CviJI RGCY 2 cut(s) 148, 239
CviKI_1 RGCY 2 cut(s) 148, 239
CviQI GTAC 3 cut(s) 137, 255, 269
Eam1104I CTCTTC 2 cut(s) 150, 246
EarI CTCTTC 2 cut(s) 150, 246
Eco130I CCWWGG 1 cut(s) 93
Eco57I CTGAAG 2 cut(s) 26, 227
EcoRI GAATTC 1 cut(s) 25
EcoT14I CCWWGG 1 cut(s) 93
ErhI CCWWGG 1 cut(s) 93
FaeI CATG 2 cut(s) 79, 97
FaiI YATR 3 cut(s) 77, 95, 107
FalI AAGNNNNNCTT 2 cut(s) 271, 303
FatI CATG 2 cut(s) 75, 93
Fnu4HI GCNGC 1 cut(s) 198
Fsp4HI GCNGC 1 cut(s) 198
GluI GCNGC 1 cut(s) 198
GsuI CTGGAG 1 cut(s) 283
Hin1II CATG 2 cut(s) 79, 97
HincII GTYRAC 1 cut(s) 119
HindII GTYRAC 1 cut(s) 119
HinfI GANTC 1 cut(s) 102
Hpy166II GTNNAC 2 cut(s) 38, 119
Hpy188I TCNGA 1 cut(s) 275
Hpy188III TCNNGA 4 cut(s) 47, 152, 245, 300
Hpy8I GTNNAC 2 cut(s) 38, 119
HpyCH4III ACNGT 3 cut(s) 42, 71, 221
HpyCH4V TGCA 2 cut(s) 197, 206
HpyF10VI GCNNNNNNNGC 1 cut(s) 203
Hsp92II CATG 2 cut(s) 79, 97
LguI GCTCTTC 2 cut(s) 150, 246
LpnPI CCDG 1 cut(s) 230
Lsp1109I GCAGC 1 cut(s) 209
LweI GCATC 1 cut(s) 163
MboII GAAGA 3 cut(s) 167, 233, 288
MluCI AATT 1 cut(s) 25
MnlI CCTC 3 cut(s) 91, 241, 259
MroXI GAANNNNTTC 1 cut(s) 280
MseI TTAA 1 cut(s) 233
MwoI GCNNNNNNNGC 1 cut(s) 203
NcoI CCATGG 1 cut(s) 93
NlaIII CATG 2 cut(s) 79, 97
NspV TTCGAA 1 cut(s) 130
PciSI GCTCTTC 2 cut(s) 150, 246
PdmI GAANNNNTTC 1 cut(s) 280
PfeI GAWTC 1 cut(s) 102
PkrI GCNGC 1 cut(s) 199
RsaI GTAC 3 cut(s) 138, 256, 270
RsaNI GTAC 3 cut(s) 137, 255, 269
SapI GCTCTTC 2 cut(s) 150, 246
SaqAI TTAA 1 cut(s) 233
SatI GCNGC 1 cut(s) 198
SetI ASST 3 cut(s) 138, 241, 270
SfaNI GCATC 1 cut(s) 163
SfuI TTCGAA 1 cut(s) 130
SgeI CNNG 8 cut(s) 59, 88, 106, 155, 164, 193, 213, 257
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
Sse9I AATT 1 cut(s) 25
StyI CCWWGG 1 cut(s) 93
TaaI ACNGT 3 cut(s) 42, 71, 221
TaqI TCGA 1 cut(s) 130
TasI AATT 1 cut(s) 25
TatI WGTACW 1 cut(s) 254
TfiI GAWTC 1 cut(s) 102
Tru1I TTAA 1 cut(s) 233
Tru9I TTAA 1 cut(s) 233
TscAI CASTG 2 cut(s) 70, 224
TseI GCWGC 1 cut(s) 197
TspDTI ATGAA 1 cut(s) 92
TspRI CASTG 2 cut(s) 70, 224
XapI RAATTY 1 cut(s) 25
XmnI GAANNNNTTC 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.