AT4G32720

La protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0011399
Physical Location & Seq
Forward (+)
15787194 .. 15789996
2803 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G32720.1

Sequence Viewer

Length: 1302 bp
ATGTCGATTCCTTGTCTAACCGAAGAGACAGCCAAAACTGTTCTTCGCCAGGTGGAGTTCTATTTCAGTGATAGTAATCTACCCATTGATGATTTCCTCAAGAAGACTGTTACAGAGAGCGAAGATGGCTTGGTGAGTTTGGCGTTGATTTGCTCCTTTAGTAAGATGAGAGGATATTTGAAGTTGGGTGATTCTAAAGGAGATGATATTCCTGAAGATACCATCAAAGCTGTTGCTGATACTCTTCGAACCTCTTCTGCTCTCAAGATTTCTGACGATGGGAAAAAGGTTGGTAGGAGTACTGAATTGTTGAAGCTGGAAGATTTGATTGAGCAACTTAATGCTAGAACAGTAGCTGCGTCACCTTTCTCCTATGATGTTAAAAGGGAAGACGTGGAATCCTTTTTCAGTCAGTATGGAAAGGTTAATAGTGTGAGGATGCCTCGTCATGTTGCAGAGTCGAGGATATTTTCTGGTGTTGCCTTGGTTGAGTTCCCTACAGAAGAGGATGCCCAGAATGTTATGAAGCAGAATTTGGTCTTTGCTGGTCAGGAGTTGGAGCTGAAACCAAAGAAAGAGTTTGATAATGAAAGGGAGAAGGATGAAGTAAAATTTGCTAATTACCAACCTCAGAAGGGATCTGCAAATCAGAAGAATGGTTCTGATCACAAAAACAATTCTGCTTATGAGCCAGATTATCCCAAGGGTTTGATCATTTCATTCACCCTCAAGCGTTCAGCTGAAGAGGGTACCACGGAACAAAAAAGTTCTGAGGAGCCAACTGATAAGACAATGGAAGAAAGTGAAACAAAGCCAGCAGATACTCCTGATGCTGATAAAGAAAACACTGGTGAGGTTCAGGCCGAGGGAGCAGAGGATGAAGATGATGAGAAAGAAGAAAAGGGTGCTCTAGCCACCCATAAAGATAATAAGGATGTTGTCTTACGTGAAGATCTTAAGGCTGTTTTCGGAAAATTTGGTGATGTCAAGTTTGTTGATTTCAAGATGGGATCTGAGACGGGTTATCTTAGGTTTGATGAACCTGAAGCATCCCAGAAAGCCCGTGCAGCAGCAGTATTAGCCAATGAAGGTGGACTAGCCGTGAAGAATTTTATTGCTGTCCTAGAACCTGTTATTGGCGAAGCTGAAAAGGAGTATTGGACTCTCCTACGAAGCAAAGATCGGTTTGACAAGGGTGGCCGTGGAGGAAGGGGAGGAAGAAGAGGAGGGAGATTCGGGAGAAAGAGGGGATCAGATTCACCGGGTGGTCGCTGGAACAAATCTCAGAAGGTGGAAGCATGA

Protein Analysis

433

Amino Acids

48.09

Weight (kDa)

5.07

Isoelectric Point (pI)

45.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
La PF05383 15 - 74 4.8e-18 La domain
RRM_1 PF00076 123 - 184 4.1e-10 RNA recognition motif
RRM_3 PF08777 309 - 404 7.2e-17 RNA binding motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011399)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32720 AT4G32720
fragaria_vesca FvH4_2g36050 FvH4_2g36050
malus_domestica MD08G1117800.v1.1 MD15G1097300.v1.1
prunus_persica Prupe.1G452100_v2.0.a1
pyrus_communis pycom08g09840 pycom15g08920
rosa_chinensis RchiOBHm_Chr6g0305801
rosa_laevigata RLG00000010857
rosa_multiflora Rmu_sc0001809.1_g000040 Rmu_sc0041759.1_g000001
rosa_roxburghii Rroxscaffold_7G00162320
rosa_rugosa Rorug06G0344000
rosa_samantha Rh6AG455700 Rh6BG445400 Rh6CG469700 Rh6DG456400
rosa_wichuraiana Rw6G039760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 749
AccB1I GGYRCC 1 cut(s) 749
AclWI GGATC 3 cut(s) 646, 1018, 1258
AcoI YGGCCR 1 cut(s) 1198
AcsI RAATTY 4 cut(s) 532, 611, 974, 1108
AcuI CTGAAG 3 cut(s) 234, 762, 1065
AdeI CACNNNGTG 1 cut(s) 1265
AfaI GTAC 2 cut(s) 301, 751
AfiI CCNNNNNNNGG 2 cut(s) 635, 1136
AflII CTTAAG 1 cut(s) 956
AgsI TTSAA 3 cut(s) 181, 313, 1003
AjiI CACGTC 1 cut(s) 394
AjnI CCWGG 1 cut(s) 48
AjuI GAANNNNNNNTTGG 4 cut(s) 518, 550, 1119, 1151
AluBI AGCT 6 cut(s) 230, 316, 356, 562, 740, 1145
AluI AGCT 6 cut(s) 230, 316, 356, 562, 740, 1145
Alw21I GWGCWC 1 cut(s) 910
Alw26I GTCTC 2 cut(s) 20, 1010
AlwI GGATC 3 cut(s) 646, 1018, 1258
AlwNI CAGNNNCTG 1 cut(s) 356
AoxI GGCC 2 cut(s) 861, 1198
ApeKI GCWGC 3 cut(s) 356, 1067, 1070
ApoI RAATTY 4 cut(s) 532, 611, 974, 1108
Asp700I GAANNNNTTC 1 cut(s) 253
Asp718I GGTACC 1 cut(s) 749
AsuC2I CCSGG 1 cut(s) 1263
AsuHPI GGTGA 7 cut(s) 145, 200, 354, 715, 863, 992, 1251
AsuII TTCGAA 1 cut(s) 247
BanI GGYRCC 1 cut(s) 749
BbsI GAAGAC 2 cut(s) 110, 396
Bbv12I GWGCWC 1 cut(s) 910
BbvI GCAGC 3 cut(s) 343, 1079, 1082
BccI CCATC 4 cut(s) 119, 230, 272, 1000
BceAI ACGGC 2 cut(s) 1085, 1185
BciT130I CCWGG 1 cut(s) 50
BclI TGATCA 2 cut(s) 664, 711
BcnI CCSGG 1 cut(s) 1263
BcoDI GTCTC 2 cut(s) 20, 1010
BfaI CTAG 4 cut(s) 345, 911, 1097, 1124
BfmI CTRYAG 1 cut(s) 498
BfrI CTTAAG 1 cut(s) 956
BglII AGATCT 1 cut(s) 952
BisI GCNGC 3 cut(s) 357, 1068, 1071
BlsI GCNGC 3 cut(s) 358, 1069, 1072
BmcAI AGTACT 1 cut(s) 301
Bme1390I CCNGG 2 cut(s) 50, 1263
BmgBI CACGTC 1 cut(s) 394
BmiI GGNNCC 2 cut(s) 751, 777
BmrFI CCNGG 2 cut(s) 50, 1263
BmsI GCATC 4 cut(s) 429, 499, 820, 1058
BpiI GAAGAC 2 cut(s) 110, 396
BplI GAGNNNNNCTC 2 cut(s) 427, 459
Bpu14I TTCGAA 1 cut(s) 247
BpuEI CTTGAG 3 cut(s) 83, 248, 713
BpuMI CCSGG 1 cut(s) 1263
BsaAI YACGTR 1 cut(s) 947
BsaBI GATNNNNATC 1 cut(s) 75
BsaJI CCNNGG 5 cut(s) 483, 702, 753, 864, 1201
Bsc4I CCNNNNNNNGG 2 cut(s) 635, 1136
Bse1I ACTGG 1 cut(s) 853
Bse8I GATNNNNATC 1 cut(s) 75
BseBI CCWGG 1 cut(s) 50
BseDI CCNNGG 5 cut(s) 483, 702, 753, 864, 1201
BseGI GGATG 6 cut(s) 444, 514, 607, 883, 940, 1049
BseJI GATNNNNATC 1 cut(s) 75
BseLI CCNNNNNNNGG 2 cut(s) 635, 1136
BseMII CTCAG 4 cut(s) 644, 762, 1005, 1298
BseNI ACTGG 1 cut(s) 853
BseRI GAGGAG 2 cut(s) 788, 1239
BseXI GCAGC 3 cut(s) 343, 1079, 1082
BsgI GTGCAG 1 cut(s) 1086
BshFI GGCC 2 cut(s) 863, 1200
BshNI GGYRCC 1 cut(s) 749
BsiHKAI GWGCWC 1 cut(s) 910
BsiSI CCGG 1 cut(s) 1262
BslI CCNNNNNNNGG 2 cut(s) 635, 1136
BsmAI GTCTC 2 cut(s) 20, 1010
BsmBI CGTCTC 1 cut(s) 1010
BsnI GGCC 2 cut(s) 863, 1200
Bsp119I TTCGAA 1 cut(s) 247
Bsp1286I GDGCHC 1 cut(s) 910
Bsp143I GATC 7 cut(s) 638, 664, 711, 952, 1010, 1180, 1250
BspANI GGCC 2 cut(s) 863, 1200
BspCNI CTCAG 4 cut(s) 643, 763, 1006, 1297
BspLI GGNNCC 2 cut(s) 751, 777
BspPI GGATC 3 cut(s) 646, 1018, 1258
BspT104I TTCGAA 1 cut(s) 247
BspT107I GGYRCC 1 cut(s) 749
BspTI CTTAAG 1 cut(s) 956
BsrI ACTGG 1 cut(s) 853
BssECI CCNNGG 5 cut(s) 483, 702, 753, 864, 1201
BssMI GATC 7 cut(s) 638, 664, 711, 952, 1010, 1180, 1250
BssT1I CCWWGG 2 cut(s) 483, 702
Bst2UI CCWGG 1 cut(s) 50
Bst4CI ACNGT 3 cut(s) 40, 109, 352
Bst6I CTCTTC 6 cut(s) 18, 249, 259, 498, 738, 1216
BstAFI CTTAAG 1 cut(s) 956
BstBAI YACGTR 1 cut(s) 947
BstBI TTCGAA 1 cut(s) 247
BstC8I GCNNGC 1 cut(s) 816
BstDEI CTNAG 5 cut(s) 630, 771, 1014, 1028, 1284
BstDSI CCRYGG 2 cut(s) 753, 1201
BstF5I GGATG 6 cut(s) 444, 514, 607, 883, 940, 1049
BstKTI GATC 7 cut(s) 641, 667, 714, 955, 1013, 1183, 1253
BstMAI GTCTC 2 cut(s) 20, 1010
BstMBI GATC 7 cut(s) 638, 664, 711, 952, 1010, 1180, 1250
BstMWI GCNNNNNNNGC 4 cut(s) 126, 869, 1067, 1079
BstNI CCWGG 1 cut(s) 50
BstSCI CCNGG 2 cut(s) 48, 1261
BstSFI CTRYAG 1 cut(s) 498
BstV1I GCAGC 3 cut(s) 343, 1079, 1082
BstV2I GAAGAC 2 cut(s) 110, 396
BstX2I RGATCY 3 cut(s) 638, 952, 1010
BstYI RGATCY 3 cut(s) 638, 952, 1010
BsuRI GGCC 2 cut(s) 863, 1200
BtgI CCRYGG 2 cut(s) 753, 1201
BtrI CACGTC 1 cut(s) 394
BtsCI GGATG 6 cut(s) 444, 514, 607, 883, 940, 1049
BtsIMutI CAGTG 2 cut(s) 73, 846
Cac8I GCNNGC 1 cut(s) 816
CaiI CAGNNNCTG 1 cut(s) 356
CseI GACGC 1 cut(s) 348
Csp6I GTAC 2 cut(s) 300, 750
CspCI CAANNNNNGTGG 2 cut(s) 1072, 1107
CviAII CATG 2 cut(s) 449, 1299
CviQI GTAC 2 cut(s) 300, 750
DdeI CTNAG 5 cut(s) 630, 771, 1014, 1028, 1284
DpnI GATC 7 cut(s) 640, 666, 713, 954, 1012, 1182, 1252
DpnII GATC 7 cut(s) 638, 664, 711, 952, 1010, 1180, 1250
DraIII CACNNNGTG 1 cut(s) 1265
EaeI YGGCCR 1 cut(s) 1198
Eam1104I CTCTTC 6 cut(s) 18, 249, 259, 498, 738, 1216
EarI CTCTTC 6 cut(s) 18, 249, 259, 498, 738, 1216
Eco130I CCWWGG 2 cut(s) 483, 702
Eco57I CTGAAG 3 cut(s) 234, 762, 1065
EcoRII CCWGG 1 cut(s) 48
EcoT14I CCWWGG 2 cut(s) 483, 702
ErhI CCWWGG 2 cut(s) 483, 702
Esp3I CGTCTC 1 cut(s) 1010
FaeI CATG 2 cut(s) 452, 1302
FaiI YATR 7 cut(s) 375, 417, 450, 524, 687, 921, 1300
FatI CATG 2 cut(s) 448, 1298
FbaI TGATCA 2 cut(s) 664, 711
Fnu4HI GCNGC 3 cut(s) 357, 1068, 1071
FokI GGATG 6 cut(s) 451, 521, 614, 890, 947, 1036
Fsp4HI GCNGC 3 cut(s) 357, 1068, 1071
FspBI CTAG 4 cut(s) 345, 911, 1097, 1124
GluI GCNGC 3 cut(s) 357, 1068, 1071
HaeIII GGCC 2 cut(s) 863, 1200
HapII CCGG 1 cut(s) 1262
HgaI GACGC 1 cut(s) 348
Hin1II CATG 2 cut(s) 452, 1302
HinfI GANTC 7 cut(s) 7, 191, 398, 458, 1162, 1233, 1256
HpaII CCGG 1 cut(s) 1262
HphI GGTGA 7 cut(s) 145, 200, 354, 715, 863, 992, 1251
Hpy166II GTNNAC 1 cut(s) 1094
Hpy188I TCNGA 9 cut(s) 274, 633, 651, 664, 772, 971, 1015, 1255, 1287
Hpy188III TCNNGA 7 cut(s) 100, 212, 265, 551, 827, 1003, 1237
Hpy8I GTNNAC 1 cut(s) 1094
HpyAV CCTTC 5 cut(s) 592, 628, 1082, 1203, 1282
HpyCH4III ACNGT 3 cut(s) 40, 109, 352
HpyCH4IV ACGT 2 cut(s) 393, 946
HpyCH4V TGCA 3 cut(s) 455, 644, 1067
HpyF10VI GCNNNNNNNGC 4 cut(s) 126, 869, 1067, 1079
HpyF3I CTNAG 5 cut(s) 630, 771, 1014, 1028, 1284
HpySE526I ACGT 2 cut(s) 393, 946
Hsp92II CATG 2 cut(s) 452, 1302
KpnI GGTACC 1 cut(s) 753
Ksp22I TGATCA 2 cut(s) 664, 711
Kzo9I GATC 7 cut(s) 638, 664, 711, 952, 1010, 1180, 1250
LmnI GCTCC 4 cut(s) 158, 559, 775, 869
Lsp1109I GCAGC 3 cut(s) 343, 1079, 1082
LweI GCATC 4 cut(s) 429, 499, 820, 1058
MaeI CTAG 4 cut(s) 345, 911, 1097, 1124
MaeII ACGT 2 cut(s) 393, 946
MaeIII GTNAC 2 cut(s) 109, 360
MalI GATC 7 cut(s) 640, 666, 713, 954, 1012, 1182, 1252
MboI GATC 7 cut(s) 638, 664, 711, 952, 1010, 1180, 1250
MflI RGATCY 3 cut(s) 638, 952, 1010
MhlI GDGCHC 1 cut(s) 910
MluCI AATT 7 cut(s) 305, 532, 611, 619, 676, 974, 1108
MlyI GAGTC 2 cut(s) 467, 1156
MmeI TCCRAC 1 cut(s) 537
MroXI GAANNNNTTC 1 cut(s) 253
MseI TTAA 4 cut(s) 339, 381, 426, 957
MspA1I CMGCKG 1 cut(s) 740
MspCI CTTAAG 1 cut(s) 956
MspI CCGG 1 cut(s) 1262
MspR9I CCNGG 2 cut(s) 50, 1263
MvaI CCWGG 1 cut(s) 50
MwoI GCNNNNNNNGC 4 cut(s) 126, 869, 1067, 1079
NciI CCSGG 1 cut(s) 1263
NdeII GATC 7 cut(s) 638, 664, 711, 952, 1010, 1180, 1250
NlaIII CATG 2 cut(s) 452, 1302
NlaIV GGNNCC 2 cut(s) 751, 777
NmeAIII GCCGAG 1 cut(s) 889
NmuCI GTSAC 1 cut(s) 360
NspV TTCGAA 1 cut(s) 247
PdmI GAANNNNTTC 1 cut(s) 253
PfeI GAWTC 5 cut(s) 7, 191, 398, 1233, 1256
PkrI GCNGC 3 cut(s) 358, 1069, 1072
PleI GAGTC 2 cut(s) 466, 1156
PpsI GAGTC 2 cut(s) 466, 1156
Ppu21I YACGTR 1 cut(s) 947
Psp6I CCWGG 1 cut(s) 48
PspGI CCWGG 1 cut(s) 48
PspN4I GGNNCC 2 cut(s) 751, 777
PstNI CAGNNNCTG 1 cut(s) 356
PsuI RGATCY 3 cut(s) 638, 952, 1010
PvuII CAGCTG 1 cut(s) 740
RsaI GTAC 2 cut(s) 301, 751
RsaNI GTAC 2 cut(s) 300, 750
SaqAI TTAA 4 cut(s) 339, 381, 426, 957
SatI GCNGC 3 cut(s) 357, 1068, 1071
Sau3AI GATC 7 cut(s) 638, 664, 711, 952, 1010, 1180, 1250
ScaI AGTACT 1 cut(s) 301
SchI GAGTC 2 cut(s) 467, 1156
ScrFI CCNGG 2 cut(s) 50, 1263
SduI GDGCHC 1 cut(s) 910
SfaNI GCATC 4 cut(s) 429, 499, 820, 1058
SfcI CTRYAG 1 cut(s) 498
SfuI TTCGAA 1 cut(s) 247
SmlI CTYRAG 4 cut(s) 98, 263, 728, 956
SmoI CTYRAG 4 cut(s) 98, 263, 728, 956
Sse9I AATT 7 cut(s) 305, 532, 611, 619, 676, 974, 1108
SspMI CTAG 4 cut(s) 345, 911, 1097, 1124
StyD4I CCNGG 2 cut(s) 48, 1261
StyI CCWWGG 2 cut(s) 483, 702
TaaI ACNGT 3 cut(s) 40, 109, 352
TaiI ACGT 2 cut(s) 396, 949
TaqI TCGA 3 cut(s) 5, 247, 461
TasI AATT 7 cut(s) 305, 532, 611, 619, 676, 974, 1108
TatI WGTACW 1 cut(s) 299
TfiI GAWTC 5 cut(s) 7, 191, 398, 1233, 1256
Tru1I TTAA 4 cut(s) 339, 381, 426, 957
Tru9I TTAA 4 cut(s) 339, 381, 426, 957
TscAI CASTG 2 cut(s) 73, 853
TseFI GTSAC 1 cut(s) 360
TseI GCWGC 3 cut(s) 356, 1067, 1070
Tsp45I GTSAC 1 cut(s) 360
TspDTI ATGAA 7 cut(s) 539, 603, 618, 708, 894, 1053, 1101
TspGWI ACGGA 1 cut(s) 770
TspRI CASTG 2 cut(s) 73, 853
Vha464I CTTAAG 1 cut(s) 956
XapI RAATTY 4 cut(s) 532, 611, 974, 1108
XmnI GAANNNNTTC 1 cut(s) 253
XspI CTAG 4 cut(s) 345, 911, 1097, 1124
ZrmI AGTACT 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.