Rh6DG456400

La protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0011399
Physical Location & Seq
Forward (+)
62708160 .. 62710646
2487 bp
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UTR
Exon/CDS
Intron
Rh6DG456400.1

Sequence Viewer

Length: 1323 bp
ATGGCTTCCCTCAGCGAAGAAACCGCGAAGAAAGTTCTTCGACAGGTTGAGTTCTACTTCAGCGATAGCAATCTTCCTAGAGACGATTTTCTGAAGAAATCGATAAGCGAAAGCGAGGATGGGATGATTAGCTTGGCTTTGATATGCTCGTTTAGTCGGATGAGAGGTCATCTCAGTTTGGGGGATTTGAAGGCCGACGCTATCCCTGAAGATAGCGTTAAGGCTGTTGCTGAAACTCTTAGAAAATCTACCACTCTCAAGATTTCCGAAGACGGGCAAAAGGTTGGTAGGGCTACAGAAATCTTGAAGCCGGAGGAGGTTATTGAGCAAGTAGACATTAGAACAGTAGCTGCTGCACCGCTTGAGTTTGATGTGAAGCTTGAGGATGTTGAAACCTTTTTCGGACAATTTGGCAAGGTTAACAGCGTGAGGCTGCCTCGTCATGTTGCAGATAAAAAGTTGTTCTGTGGGACTGCTTTGGTCGAGTTTTCAACAGAGGAAGACGCCAATAAGATTCTGAAGGAAACTCTGAACTATGAAGGTGTTCAGCTAGAACTGAAACCAAAGAAGGAATTTGACACTGAAAGAGCAAAAGAGACGGAGGAATATGAGAAGACTCCTCGACCCCTCACAAATTCAAATCGCAAGAATAACGCAAAACCAGAGGCAGACTACCCTAAAGGCTTGATTGTTGCCTTTAAGCTAAGGAGCTCATCAGAGAAAGATTCTGCTGAGCATAACGGTACTCCTGAAGATACAAAAAAGGTGGCAGGAGATGTTAACACGGAGGATGCTGAGAAGGATAATAAGGAAAATGTTGATGAGAAAAATAGTTTGGATGGTGAAGAAAAGAAAACTGAAGATGGGGAAAAGCCTTCTGAAGAAGGAAAGGGTGGAGAGAAGGAAGAAAGACTTAATGCTGTAGAAACTTACAAAGATAACATGGACGTTGTTATGCGTGAGGATTTGAAGACCCTCTTTGGGAAGTTTGGCACCGTAAAGTACATTGACTTCAAGATTGGAGAAGAATCGGGATTCGTTCGGTTTGAAGAACCTGAAGCAGCTCACAAAGCACGTGCCGCTGCAGTCCTTACCGAGCTTGGAGGTCTTGTTGTGAAAAATTTCATTGCTACTCTGGAACCAGTTAGTGGCGAGGCCGAGAAGGAGTACTGGAAGAATTTTCGCGGTAGTCAAGAAAAATTCCGCGAAAGCAAGGGCGGCCATCGTGGAAGGGGAGGCAAACACCATAGGGGTGGTTACAAACATGGCCGTTCAAGGGATGATAATGATGGAGGTCGCCCAAACAAACACCGGAAGTTTTGA

Protein Analysis

440

Amino Acids

49.39

Weight (kDa)

5.6

Isoelectric Point (pI)

35.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
La PF05383 13 - 57 9.8e-19 La domain
RRM_1 PF00076 121 - 175 1.9e-09 RNA recognition motif
RRM_3 PF08777 318 - 410 9e-21 RNA binding motif
RRM_1 PF00076 320 - 369 7.4e-07 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011399)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32720 AT4G32720
fragaria_vesca FvH4_2g36050 FvH4_2g36050
malus_domestica MD08G1117800.v1.1 MD15G1097300.v1.1
prunus_persica Prupe.1G452100_v2.0.a1
pyrus_communis pycom08g09840 pycom15g08920
rosa_chinensis RchiOBHm_Chr6g0305801
rosa_laevigata RLG00000010857
rosa_multiflora Rmu_sc0001809.1_g000040 Rmu_sc0041759.1_g000001
rosa_roxburghii Rroxscaffold_7G00162320
rosa_rugosa Rorug06G0344000
rosa_samantha Rh6AG455700 Rh6BG445400 Rh6CG469700 Rh6DG456400
rosa_wichuraiana Rw6G039760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 992
AccB7I CCANNNNNTGG 1 cut(s) 1148
AccI GTMKAC 1 cut(s) 333
AccII CGCG 3 cut(s) 26, 1185, 1206
AciI CCGC 6 cut(s) 24, 359, 1080, 1185, 1204, 1218
AcoI YGGCCR 2 cut(s) 1219, 1267
AcsI RAATTY 5 cut(s) 572, 634, 1120, 1177, 1199
AcuI CTGAAG 8 cut(s) 43, 113, 228, 539, 771, 879, 900, 1077
AcvI CACGTG 1 cut(s) 1076
AcyI GRCGYC 1 cut(s) 504
AfaI GTAC 3 cut(s) 745, 1004, 1169
AfiI CCNNNNNNNGG 4 cut(s) 273, 981, 1148, 1276
AgsI TTSAA 9 cut(s) 190, 307, 392, 492, 639, 970, 1015, 1049, 1275
AjuI GAANNNNNNNTTGG 2 cut(s) 818, 850
AluBI AGCT 8 cut(s) 132, 350, 379, 550, 703, 711, 1064, 1099
AluI AGCT 8 cut(s) 132, 350, 379, 550, 703, 711, 1064, 1099
Alw21I GWGCWC 1 cut(s) 713
Alw26I GTCTC 2 cut(s) 75, 590
AlwNI CAGNNNCTG 1 cut(s) 350
AoxI GGCC 4 cut(s) 192, 1155, 1219, 1267
ApeKI GCWGC 5 cut(s) 350, 353, 433, 1061, 1082
ApoI RAATTY 5 cut(s) 572, 634, 1120, 1177, 1199
Asp700I GAANNNNTTC 2 cut(s) 543, 1121
AsuHPI GGTGA 1 cut(s) 854
BanI GGYRCC 1 cut(s) 992
BanII GRGCYC 1 cut(s) 713
BarI GAAGNNNNNNTAC 2 cut(s) 995, 1027
BbrPI CACGTG 1 cut(s) 1076
BbsI GAAGAC 4 cut(s) 276, 507, 620, 977
Bbv12I GWGCWC 1 cut(s) 713
BbvCI CCTCAGC 1 cut(s) 11
BbvI GCAGC 5 cut(s) 337, 340, 420, 1069, 1073
BccI CCATC 5 cut(s) 113, 833, 857, 1230, 1283
BceAI ACGGC 1 cut(s) 1254
BcoDI GTCTC 2 cut(s) 75, 590
BfaI CTAG 2 cut(s) 78, 551
BfmI CTRYAG 3 cut(s) 294, 921, 1083
BisI GCNGC 7 cut(s) 351, 354, 434, 1062, 1080, 1083, 1219
BlpI GCTNAGC 1 cut(s) 732
BlsI GCNGC 7 cut(s) 352, 355, 435, 1063, 1081, 1084, 1220
BmcAI AGTACT 1 cut(s) 1169
BmiI GGNNCC 2 cut(s) 994, 1140
BmsI GCATC 1 cut(s) 781
BpiI GAAGAC 4 cut(s) 276, 507, 620, 977
BplI GAGNNNNNCTC 4 cut(s) 156, 188, 421, 453
Bpu10I CCTNAGC 2 cut(s) 11, 704
Bpu1102I GCTNAGC 1 cut(s) 732
BpuEI CTTGAG 3 cut(s) 242, 383, 401
Bsa29I ATCGAT 1 cut(s) 101
BsaAI YACGTR 1 cut(s) 1076
BsaBI GATNNNNATC 1 cut(s) 69
BsaHI GRCGYC 1 cut(s) 504
BsaWI WCCGGW 1 cut(s) 1311
BsaXI ACNNNNNCTCC 2 cut(s) 1095, 1125
Bsc4I CCNNNNNNNGG 4 cut(s) 273, 981, 1148, 1276
Bse1I ACTGG 2 cut(s) 1142, 1175
Bse3DI GCAATG 1 cut(s) 1125
Bse8I GATNNNNATC 1 cut(s) 69
BseCI ATCGAT 1 cut(s) 101
BseGI GGATG 7 cut(s) 124, 129, 165, 391, 796, 844, 1285
BseJI GATNNNNATC 1 cut(s) 69
BseLI CCNNNNNNNGG 4 cut(s) 273, 981, 1148, 1276
BseMI GCAATG 1 cut(s) 1125
BseMII CTCAG 4 cut(s) 25, 187, 723, 786
BseNI ACTGG 2 cut(s) 1142, 1175
BseRI GAGGAG 2 cut(s) 329, 609
BseXI GCAGC 5 cut(s) 337, 340, 420, 1069, 1073
BsgI GTGCAG 1 cut(s) 339
Bsh1236I CGCG 3 cut(s) 26, 1185, 1206
BshFI GGCC 4 cut(s) 194, 1157, 1221, 1269
BshNI GGYRCC 1 cut(s) 992
BshVI ATCGAT 1 cut(s) 101
BsiHKAI GWGCWC 1 cut(s) 713
BsiSI CCGG 2 cut(s) 311, 1312
BslFI GGGAC 1 cut(s) 484
BslI CCNNNNNNNGG 4 cut(s) 273, 981, 1148, 1276
BsmAI GTCTC 2 cut(s) 75, 590
BsmBI CGTCTC 2 cut(s) 75, 590
BsmFI GGGAC 1 cut(s) 484
BsnI GGCC 4 cut(s) 194, 1157, 1221, 1269
Bsp1286I GDGCHC 1 cut(s) 713
Bsp1720I GCTNAGC 1 cut(s) 732
BspACI CCGC 6 cut(s) 24, 359, 1080, 1185, 1204, 1218
BspANI GGCC 4 cut(s) 194, 1157, 1221, 1269
BspCNI CTCAG 4 cut(s) 24, 186, 724, 787
BspDI ATCGAT 1 cut(s) 101
BspFNI CGCG 3 cut(s) 26, 1185, 1206
BspLI GGNNCC 2 cut(s) 994, 1140
BspMAI CTGCAG 1 cut(s) 1087
BspT107I GGYRCC 1 cut(s) 992
BsrDI GCAATG 1 cut(s) 1125
BsrI ACTGG 2 cut(s) 1142, 1175
BssNI GRCGYC 1 cut(s) 504
Bst4CI ACNGT 3 cut(s) 346, 743, 997
BstACI GRCGYC 1 cut(s) 504
BstBAI YACGTR 1 cut(s) 1076
BstDEI CTNAG 6 cut(s) 11, 173, 239, 704, 732, 795
BstF5I GGATG 7 cut(s) 124, 129, 165, 391, 796, 844, 1285
BstFNI CGCG 3 cut(s) 26, 1185, 1206
BstMAI GTCTC 2 cut(s) 75, 590
BstMWI GCNNNNNNNGC 3 cut(s) 1070, 1079, 1218
BstSFI CTRYAG 3 cut(s) 294, 921, 1083
BstUI CGCG 3 cut(s) 26, 1185, 1206
BstV1I GCAGC 5 cut(s) 337, 340, 420, 1069, 1073
BstV2I GAAGAC 4 cut(s) 276, 507, 620, 977
BstXI CCANNNNNNTGG 1 cut(s) 1253
Bsu15I ATCGAT 1 cut(s) 101
BsuRI GGCC 4 cut(s) 194, 1157, 1221, 1269
BsuTUI ATCGAT 1 cut(s) 101
BtsCI GGATG 7 cut(s) 124, 129, 165, 391, 796, 844, 1285
BtsIMutI CAGTG 1 cut(s) 579
CaiI CAGNNNCTG 1 cut(s) 350
ClaI ATCGAT 1 cut(s) 101
CseI GACGC 2 cut(s) 206, 512
Csp6I GTAC 3 cut(s) 744, 1003, 1168
CspCI CAANNNNNGTGG 2 cut(s) 747, 782
CviAII CATG 3 cut(s) 443, 943, 1265
CviQI GTAC 3 cut(s) 744, 1003, 1168
DdeI CTNAG 6 cut(s) 11, 173, 239, 704, 732, 795
EaeI YGGCCR 2 cut(s) 1219, 1267
Ecl136II GAGCTC 1 cut(s) 711
Eco24I GRGCYC 1 cut(s) 713
Eco53kI GAGCTC 1 cut(s) 711
Eco57I CTGAAG 8 cut(s) 43, 113, 228, 539, 771, 879, 900, 1077
Eco72I CACGTG 1 cut(s) 1076
EcoICRI GAGCTC 1 cut(s) 711
EcoT38I GRGCYC 1 cut(s) 713
Esp3I CGTCTC 2 cut(s) 75, 590
FaeI CATG 3 cut(s) 446, 946, 1268
FaiI YATR 9 cut(s) 145, 444, 537, 609, 738, 944, 956, 1248, 1266
FalI AAGNNNNNCTT 4 cut(s) 897, 929, 962, 994
FaqI GGGAC 1 cut(s) 484
FatI CATG 3 cut(s) 442, 942, 1264
FblI GTMKAC 1 cut(s) 333
Fnu4HI GCNGC 7 cut(s) 351, 354, 434, 1062, 1080, 1083, 1219
FokI GGATG 7 cut(s) 131, 136, 172, 398, 803, 851, 1292
FriOI GRGCYC 1 cut(s) 713
Fsp4HI GCNGC 7 cut(s) 351, 354, 434, 1062, 1080, 1083, 1219
FspBI CTAG 2 cut(s) 78, 551
GluI GCNGC 7 cut(s) 351, 354, 434, 1062, 1080, 1083, 1219
HaeIII GGCC 4 cut(s) 194, 1157, 1221, 1269
HapII CCGG 2 cut(s) 311, 1312
HgaI GACGC 2 cut(s) 206, 512
Hin1I GRCGYC 1 cut(s) 504
Hin1II CATG 3 cut(s) 446, 946, 1268
HincII GTYRAC 2 cut(s) 421, 781
HindII GTYRAC 2 cut(s) 421, 781
HindIII AAGCTT 1 cut(s) 377
HinfI GANTC 5 cut(s) 514, 616, 725, 1028, 1035
HpaI GTTAAC 2 cut(s) 421, 781
HpaII CCGG 2 cut(s) 311, 1312
HphI GGTGA 1 cut(s) 854
Hpy166II GTNNAC 3 cut(s) 334, 421, 781
Hpy188I TCNGA 8 cut(s) 93, 159, 268, 404, 519, 531, 718, 880
Hpy188III TCNNGA 7 cut(s) 259, 304, 749, 1015, 1032, 1136, 1193
Hpy8I GTNNAC 3 cut(s) 334, 421, 781
Hpy99I CGWCG 1 cut(s) 200
HpyCH4III ACNGT 3 cut(s) 346, 743, 997
HpyCH4IV ACGT 2 cut(s) 948, 1075
HpyCH4V TGCA 3 cut(s) 356, 449, 1085
HpyF10VI GCNNNNNNNGC 3 cut(s) 1070, 1079, 1218
HpyF3I CTNAG 6 cut(s) 11, 173, 239, 704, 732, 795
HpySE526I ACGT 2 cut(s) 948, 1075
Hsp92I GRCGYC 1 cut(s) 504
Hsp92II CATG 3 cut(s) 446, 946, 1268
KspAI GTTAAC 2 cut(s) 421, 781
LmnI GCTCC 1 cut(s) 708
Lsp1109I GCAGC 5 cut(s) 337, 340, 420, 1069, 1073
LweI GCATC 1 cut(s) 781
MaeI CTAG 2 cut(s) 78, 551
MaeII ACGT 2 cut(s) 948, 1075
MaeIII GTNAC 1 cut(s) 1256
MhlI GDGCHC 1 cut(s) 713
MluCI AATT 6 cut(s) 407, 572, 634, 1120, 1177, 1199
MlyI GAGTC 1 cut(s) 610
MmeI TCCRAC 1 cut(s) 137
MroXI GAANNNNTTC 2 cut(s) 543, 1121
MseI TTAA 5 cut(s) 219, 420, 699, 780, 915
MslI CAYNNNNRTG 1 cut(s) 1251
MspA1I CMGCKG 1 cut(s) 1082
MspI CCGG 2 cut(s) 311, 1312
MvnI CGCG 3 cut(s) 26, 1185, 1206
MwoI GCNNNNNNNGC 3 cut(s) 1070, 1079, 1218
NlaIII CATG 3 cut(s) 446, 946, 1268
NlaIV GGNNCC 2 cut(s) 994, 1140
NmeAIII GCCGAG 1 cut(s) 1183
PdmI GAANNNNTTC 2 cut(s) 543, 1121
PfeI GAWTC 4 cut(s) 514, 725, 1028, 1035
PflMI CCANNNNNTGG 1 cut(s) 1148
PkrI GCNGC 7 cut(s) 352, 355, 435, 1063, 1081, 1084, 1220
PleI GAGTC 1 cut(s) 610
PmaCI CACGTG 1 cut(s) 1076
PmlI CACGTG 1 cut(s) 1076
PpsI GAGTC 1 cut(s) 610
Ppu21I YACGTR 1 cut(s) 1076
Psp124BI GAGCTC 1 cut(s) 713
PspCI CACGTG 1 cut(s) 1076
PspN4I GGNNCC 2 cut(s) 994, 1140
PstI CTGCAG 1 cut(s) 1087
PstNI CAGNNNCTG 1 cut(s) 350
RsaI GTAC 3 cut(s) 745, 1004, 1169
RsaNI GTAC 3 cut(s) 744, 1003, 1168
RseI CAYNNNNRTG 1 cut(s) 1251
SacI GAGCTC 1 cut(s) 713
SaqAI TTAA 5 cut(s) 219, 420, 699, 780, 915
SatI GCNGC 7 cut(s) 351, 354, 434, 1062, 1080, 1083, 1219
ScaI AGTACT 1 cut(s) 1169
SchI GAGTC 1 cut(s) 610
SduI GDGCHC 1 cut(s) 713
SfaNI GCATC 1 cut(s) 781
SfcI CTRYAG 3 cut(s) 294, 921, 1083
SmiMI CAYNNNNRTG 1 cut(s) 1251
SmlI CTYRAG 3 cut(s) 257, 362, 380
SmoI CTYRAG 3 cut(s) 257, 362, 380
Sse9I AATT 6 cut(s) 407, 572, 634, 1120, 1177, 1199
SsiI CCGC 6 cut(s) 24, 359, 1080, 1185, 1204, 1218
SspMI CTAG 2 cut(s) 78, 551
SstI GAGCTC 1 cut(s) 713
TaaI ACNGT 3 cut(s) 346, 743, 997
TaiI ACGT 2 cut(s) 951, 1078
TaqI TCGA 4 cut(s) 40, 101, 483, 622
TasI AATT 6 cut(s) 407, 572, 634, 1120, 1177, 1199
TatI WGTACW 2 cut(s) 1002, 1167
TauI GCSGC 2 cut(s) 1082, 1221
TfiI GAWTC 4 cut(s) 514, 725, 1028, 1035
Tru1I TTAA 5 cut(s) 219, 420, 699, 780, 915
Tru9I TTAA 5 cut(s) 219, 420, 699, 780, 915
TscAI CASTG 1 cut(s) 586
TseI GCWGC 5 cut(s) 350, 353, 433, 1061, 1082
TspDTI ATGAA 2 cut(s) 552, 1114
TspGWI ACGGA 2 cut(s) 614, 800
TspRI CASTG 1 cut(s) 586
Van91I CCANNNNNTGG 1 cut(s) 1148
XapI RAATTY 5 cut(s) 572, 634, 1120, 1177, 1199
XmiI GTMKAC 1 cut(s) 333
XmnI GAANNNNTTC 2 cut(s) 543, 1121
XspI CTAG 2 cut(s) 78, 551
ZrmI AGTACT 1 cut(s) 1169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.