pycom08g09840

La protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0011399
Physical Location & Seq
Reverse (-)
8170563 .. 8173191
2629 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g09840.6

Sequence Viewer

Length: 1380 bp
ATGGCGACGCCTTCTTTGGACGAAGAAACCTCGAAGAAAGTGATCCGCCAGGTCGAGTTTTACTTCAGCGACAGCAACCTTCCGAGGGACGATTTTCTCAGTAAAACGATTAGTGAAGGCGAAGACGGACTGGTTAGCTTGGCTCTGATATGCTCGTTTAGTCGGATGAGAAATCATCTAAGTTTGGGGGATGTGAAGCCGGACAGTGTCCCCGAAGCTATCATAAAGGCCGTTGCCGAAACGCTTCGACTATCTGCCACTTTAAAACTTTCGGAAGACGGGACAAAGGTTGGTAGGGCTAATGAAATGCTGAAGCCGGAGGAGGTGATAGAGCAGGTTGACATAAGAACGGTAGCTGCTTCACCGTTTGCGTTTGATGTGAAGCTTGAAGATGTCGAAACTTTTTTTAGGCAATTTGCCAAGCTTAACAGCGTGAGGCTGCCTCGCCATGTTGCCGACAAAAAGCTACTCTGTGGCACTGCTTTGGTTGAGTTTTCAACTGAGGAAGAAGCCAATAAGATTTTGGAGCAACCTTTGGAATGTGCAGGTGTTAAGTTAGAACTGAAGCCGAAGAGGGATTTTGATGCCGATAGAGAAAGAGAGGTAAAGGAATATGAGGCTCGACCTGTTACAAGTACGAAGGGCAAGAATAACCCGAAAGCTGAAGCTGACTACCCTAAAGGCTTGATTGTTGCATTCACGTTAAAGAGCTTGTCCGGCAAAGGTCCTGCAGTGGTTAGTGGTGCGCCGGACAATGCTAATGGTAGTACAAATGGTACTAGTGAAGAAACAGAAAATAAGGTGTCAGAAGATGTTAAAGTAGCTAATGAAGATGTAGAAGTTTCTGGAGAGGATGCTAAGGATAAGGAAAATTCTGATGAGAAAAATAGTTTGGATGACGTGAAGGAAACTGGAGATGGGGAAAAGTCTTCAGAAGGTTCCGTTCCAAAGGGTGGAGAGAAGGAAGAAAGATTGAATGCTGCCGCATACAAAGATAACATGGATGTCGTTTTGCGTGAGGATTTGAAGGCTGTCTTTGAAAAGTTTGGCACCGTAAAGTACATTGATTTCAAGATCGATCAAGAATCAGGATACATTCGGTTTGAAGAACCTGAAGCAGCTCAGAAAGCACGTGCAGCTGCAGTCTTTACCGAGCAAGGAGGTCTGGCTGTGAAGAATTTCATCGCTACTTTGGAACCAGTCAGTGGTGAGGCGGAAAAGGAGTACTGGAGCCTTTTCCGTGGCAACCAAGAAAAATTCCGCGATAGTAAGAACCACCGTGGAGGAAGGGGAGGCAAGCACCATCGAGGTGGGTGGAAAGGCCGCTCAAGAGACAATGATAAATCCGGTGGTCGCCCCAATAAAGTCCGCAAATTTTGA

Protein Analysis

460

Amino Acids

50.74

Weight (kDa)

5.32

Isoelectric Point (pI)

31.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011399)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32720 AT4G32720
fragaria_vesca FvH4_2g36050 FvH4_2g36050
malus_domestica MD08G1117800.v1.1 MD15G1097300.v1.1
prunus_persica Prupe.1G452100_v2.0.a1
pyrus_communis pycom08g09840 pycom15g08920
rosa_chinensis RchiOBHm_Chr6g0305801
rosa_laevigata RLG00000010857
rosa_multiflora Rmu_sc0001809.1_g000040 Rmu_sc0041759.1_g000001
rosa_roxburghii Rroxscaffold_7G00162320
rosa_rugosa Rorug06G0344000
rosa_samantha Rh6AG455700 Rh6BG445400 Rh6CG469700 Rh6DG456400
rosa_wichuraiana Rw6G039760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 536
Acc36I ACCTGC 2 cut(s) 325, 536
AccB1I GGYRCC 1 cut(s) 1049
AccB7I CCANNNNNTGG 2 cut(s) 953, 1205
AccBSI CCGCTC 1 cut(s) 1326
AccII CGCG 1 cut(s) 1263
AciI CCGC 6 cut(s) 46, 984, 1214, 1261, 1324, 1369
AclWI GGATC 1 cut(s) 37
AcsI RAATTY 4 cut(s) 871, 1177, 1256, 1373
AcuI CTGAAG 6 cut(s) 49, 332, 584, 684, 915, 1134
AcvI CACGTG 1 cut(s) 1133
AcyI GRCGYC 1 cut(s) 8
AfaI GTAC 5 cut(s) 637, 769, 778, 1061, 1226
AfiI CCNNNNNNNGG 3 cut(s) 85, 953, 1205
AgsI TTSAA 7 cut(s) 389, 498, 976, 1027, 1040, 1072, 1106
AhlI ACTAGT 1 cut(s) 779
AjiI CACGTC 1 cut(s) 901
AjnI CCWGG 1 cut(s) 48
AjuI GAANNNNNNNTTGG 2 cut(s) 875, 907
Alw26I GTCTC 1 cut(s) 1326
AlwI GGATC 1 cut(s) 37
AoxI GGCC 2 cut(s) 228, 1321
ApeKI GCWGC 6 cut(s) 356, 439, 980, 1118, 1136, 1139
ApoI RAATTY 4 cut(s) 871, 1177, 1256, 1373
ArsI GACNNNNNNTTYG 1 cut(s) 30
Asp700I GAANNNNTTC 2 cut(s) 243, 1178
AspLEI GCGC 1 cut(s) 748
AspS9I GGNCC 1 cut(s) 725
AsuHPI GGTGA 3 cut(s) 337, 354, 1220
AvaII GGWCC 1 cut(s) 725
BanI GGYRCC 1 cut(s) 1049
BbrPI CACGTG 1 cut(s) 1133
BbsI GAAGAC 3 cut(s) 129, 282, 921
BbvI GCAGC 6 cut(s) 343, 426, 967, 1126, 1130, 1148
BccI CCATC 2 cut(s) 911, 1311
BceAI ACGGC 1 cut(s) 215
BciT130I CCWGG 1 cut(s) 50
BciVI GTATCC 1 cut(s) 1085
BcoDI GTCTC 1 cut(s) 1326
BcuI ACTAGT 1 cut(s) 779
BfaI CTAG 1 cut(s) 780
BfmI CTRYAG 2 cut(s) 729, 1140
BfuAI ACCTGC 2 cut(s) 325, 536
BfuI GTATCC 1 cut(s) 1085
BisI GCNGC 8 cut(s) 357, 440, 981, 984, 1119, 1137, 1140, 1324
BlsI GCNGC 8 cut(s) 358, 441, 982, 985, 1120, 1138, 1141, 1325
BmcAI AGTACT 1 cut(s) 1226
Bme1390I CCNGG 1 cut(s) 50
Bme18I GGWCC 1 cut(s) 725
BmgBI CACGTC 1 cut(s) 901
BmgT120I GGNCC 1 cut(s) 725
BmiI GGNNCC 4 cut(s) 940, 1051, 1197, 1232
BmrFI CCNGG 1 cut(s) 50
BmsI GCATC 2 cut(s) 574, 844
BpiI GAAGAC 3 cut(s) 129, 282, 921
BplI GAGNNNNNCTC 2 cut(s) 427, 459
BpmI CTGGAG 3 cut(s) 867, 933, 1249
Bpu10I CCTNAGC 1 cut(s) 858
BpuEI CTTGAG 1 cut(s) 1312
Bsa29I ATCGAT 1 cut(s) 1077
BsaAI YACGTR 1 cut(s) 1133
BsaHI GRCGYC 1 cut(s) 8
BsaJI CCNNGG 3 cut(s) 83, 1240, 1279
BsaWI WCCGGW 1 cut(s) 1346
Bsc4I CCNNNNNNNGG 3 cut(s) 85, 953, 1205
Bse1I ACTGG 4 cut(s) 135, 916, 1199, 1232
BseBI CCWGG 1 cut(s) 50
BseCI ATCGAT 1 cut(s) 1077
BseDI CCNNGG 3 cut(s) 83, 1240, 1279
BseGI GGATG 5 cut(s) 171, 196, 859, 901, 1009
BseLI CCNNNNNNNGG 3 cut(s) 85, 953, 1205
BseMII CTCAG 3 cut(s) 112, 492, 1136
BseNI ACTGG 4 cut(s) 135, 916, 1199, 1232
BseRI GAGGAG 1 cut(s) 335
BseXI GCAGC 6 cut(s) 343, 426, 967, 1126, 1130, 1148
BsgI GTGCAG 2 cut(s) 564, 1155
Bsh1236I CGCG 1 cut(s) 1263
BshFI GGCC 2 cut(s) 230, 1323
BshNI GGYRCC 1 cut(s) 1049
BshVI ATCGAT 1 cut(s) 1077
BsiSI CCGG 5 cut(s) 200, 317, 717, 749, 1347
BslFI GGGAC 3 cut(s) 101, 194, 295
BslI CCNNNNNNNGG 3 cut(s) 85, 953, 1205
BsmAI GTCTC 1 cut(s) 1326
BsmFI GGGAC 3 cut(s) 101, 194, 295
BsmI GAATGC 2 cut(s) 695, 982
BsnI GGCC 2 cut(s) 230, 1323
Bsp143I GATC 3 cut(s) 42, 1074, 1078
BspACI CCGC 6 cut(s) 46, 984, 1214, 1261, 1324, 1369
BspANI GGCC 2 cut(s) 230, 1323
BspCNI CTCAG 3 cut(s) 111, 493, 1135
BspDI ATCGAT 1 cut(s) 1077
BspFNI CGCG 1 cut(s) 1263
BspLI GGNNCC 4 cut(s) 940, 1051, 1197, 1232
BspMAI CTGCAG 2 cut(s) 733, 1144
BspMI ACCTGC 2 cut(s) 325, 536
BspPI GGATC 1 cut(s) 37
BspT107I GGYRCC 1 cut(s) 1049
BsrBI CCGCTC 1 cut(s) 1326
BsrI ACTGG 4 cut(s) 135, 916, 1199, 1232
BssECI CCNNGG 3 cut(s) 83, 1240, 1279
BssMI GATC 3 cut(s) 42, 1074, 1078
BssNI GRCGYC 1 cut(s) 8
Bst2UI CCWGG 1 cut(s) 50
Bst4CI ACNGT 5 cut(s) 206, 352, 366, 1054, 1280
Bst6I CTCTTC 1 cut(s) 566
BstACI GRCGYC 1 cut(s) 8
BstBAI YACGTR 1 cut(s) 1133
BstC8I GCNNGC 1 cut(s) 1298
BstDEI CTNAG 5 cut(s) 98, 179, 501, 858, 1122
BstDSI CCRYGG 2 cut(s) 1240, 1279
BstF5I GGATG 5 cut(s) 171, 196, 859, 901, 1009
BstFNI CGCG 1 cut(s) 1263
BstHHI GCGC 1 cut(s) 748
BstKTI GATC 3 cut(s) 45, 1077, 1081
BstMAI GTCTC 1 cut(s) 1326
BstMBI GATC 3 cut(s) 42, 1074, 1078
BstMWI GCNNNNNNNGC 3 cut(s) 717, 1127, 1136
BstNI CCWGG 1 cut(s) 50
BstSCI CCNGG 1 cut(s) 48
BstSFI CTRYAG 2 cut(s) 729, 1140
BstUI CGCG 1 cut(s) 1263
BstV1I GCAGC 6 cut(s) 343, 426, 967, 1126, 1130, 1148
BstV2I GAAGAC 3 cut(s) 129, 282, 921
BstXI CCANNNNNNTGG 1 cut(s) 1310
Bsu15I ATCGAT 1 cut(s) 1077
BsuI GTATCC 1 cut(s) 1085
BsuRI GGCC 2 cut(s) 230, 1323
BsuTUI ATCGAT 1 cut(s) 1077
BtgI CCRYGG 2 cut(s) 1240, 1279
BtgZI GCGATG 1 cut(s) 1168
BtrI CACGTC 1 cut(s) 901
BtsCI GGATG 5 cut(s) 171, 196, 859, 901, 1009
BtsI GCAGTG 2 cut(s) 477, 738
BtsIMutI CAGTG 4 cut(s) 211, 477, 738, 1210
BveI ACCTGC 2 cut(s) 325, 536
Cac8I GCNNGC 1 cut(s) 1298
CfoI GCGC 1 cut(s) 748
Cfr13I GGNCC 1 cut(s) 725
ClaI ATCGAT 1 cut(s) 1077
CseI GACGC 1 cut(s) 16
Csp6I GTAC 5 cut(s) 636, 768, 777, 1060, 1225
CviAII CATG 2 cut(s) 449, 1000
CviQI GTAC 5 cut(s) 636, 768, 777, 1060, 1225
DdeI CTNAG 5 cut(s) 98, 179, 501, 858, 1122
DpnI GATC 3 cut(s) 44, 1076, 1080
DpnII GATC 3 cut(s) 42, 1074, 1078
DraI TTTAAA 1 cut(s) 264
Eam1104I CTCTTC 1 cut(s) 566
EarI CTCTTC 1 cut(s) 566
EciI GGCGGA 2 cut(s) 35, 1229
Eco47I GGWCC 1 cut(s) 725
Eco57I CTGAAG 6 cut(s) 49, 332, 584, 684, 915, 1134
Eco72I CACGTG 1 cut(s) 1133
EcoO109I RGGNCCY 1 cut(s) 725
EcoRII CCWGG 1 cut(s) 48
FaeI CATG 2 cut(s) 452, 1003
FaiI YATR 7 cut(s) 151, 224, 344, 450, 615, 988, 1001
FalI AAGNNNNNCTT 2 cut(s) 1019, 1051
FaqI GGGAC 3 cut(s) 101, 194, 295
FatI CATG 2 cut(s) 448, 999
Fnu4HI GCNGC 8 cut(s) 357, 440, 981, 984, 1119, 1137, 1140, 1324
FokI GGATG 5 cut(s) 178, 203, 866, 908, 1016
Fsp4HI GCNGC 8 cut(s) 357, 440, 981, 984, 1119, 1137, 1140, 1324
FspBI CTAG 1 cut(s) 780
GlaI GCGC 1 cut(s) 747
GluI GCNGC 8 cut(s) 357, 440, 981, 984, 1119, 1137, 1140, 1324
GsuI CTGGAG 3 cut(s) 867, 933, 1249
HaeIII GGCC 2 cut(s) 230, 1323
HapII CCGG 5 cut(s) 200, 317, 717, 749, 1347
HgaI GACGC 1 cut(s) 16
HhaI GCGC 1 cut(s) 748
Hin1I GRCGYC 1 cut(s) 8
Hin1II CATG 2 cut(s) 452, 1003
Hin6I GCGC 1 cut(s) 746
HinP1I GCGC 1 cut(s) 746
HincII GTYRAC 1 cut(s) 340
HindII GTYRAC 1 cut(s) 340
HindIII AAGCTT 2 cut(s) 383, 422
HinfI GANTC 1 cut(s) 1085
HpaII CCGG 5 cut(s) 200, 317, 717, 749, 1347
HphI GGTGA 3 cut(s) 337, 354, 1220
Hpy166II GTNNAC 1 cut(s) 340
Hpy188I TCNGA 8 cut(s) 84, 147, 165, 274, 808, 877, 934, 1125
Hpy188III TCNNGA 5 cut(s) 846, 1072, 1082, 1089, 1329
Hpy8I GTNNAC 1 cut(s) 340
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 9 cut(s) 21, 89, 110, 634, 898, 929, 955, 1021, 1281
HpyCH4III ACNGT 5 cut(s) 206, 352, 366, 1054, 1280
HpyCH4IV ACGT 3 cut(s) 701, 900, 1132
HpyCH4V TGCA 5 cut(s) 545, 695, 731, 1136, 1142
HpyF10VI GCNNNNNNNGC 3 cut(s) 717, 1127, 1136
HpyF3I CTNAG 5 cut(s) 98, 179, 501, 858, 1122
HpySE526I ACGT 3 cut(s) 701, 900, 1132
Hsp92I GRCGYC 1 cut(s) 8
Hsp92II CATG 2 cut(s) 452, 1003
HspAI GCGC 1 cut(s) 746
Kzo9I GATC 3 cut(s) 42, 1074, 1078
LmnI GCTCC 2 cut(s) 526, 1230
Lsp1109I GCAGC 6 cut(s) 343, 426, 967, 1126, 1130, 1148
LweI GCATC 2 cut(s) 574, 844
MaeI CTAG 1 cut(s) 780
MaeII ACGT 3 cut(s) 701, 900, 1132
MaeIII GTNAC 1 cut(s) 628
MalI GATC 3 cut(s) 44, 1076, 1080
MbiI CCGCTC 1 cut(s) 1326
MboI GATC 3 cut(s) 42, 1074, 1078
MluCI AATT 5 cut(s) 413, 871, 1177, 1256, 1373
MmeI TCCRAC 1 cut(s) 143
MroXI GAANNNNTTC 2 cut(s) 243, 1178
MseI TTAA 5 cut(s) 263, 426, 552, 704, 816
MslI CAYNNNNRTG 1 cut(s) 1308
MspA1I CMGCKG 1 cut(s) 1139
MspI CCGG 5 cut(s) 200, 317, 717, 749, 1347
MspR9I CCNGG 1 cut(s) 50
Mva1269I GAATGC 2 cut(s) 695, 982
MvaI CCWGG 1 cut(s) 50
MvnI CGCG 1 cut(s) 1263
MwoI GCNNNNNNNGC 3 cut(s) 717, 1127, 1136
NdeII GATC 3 cut(s) 42, 1074, 1078
NlaIII CATG 2 cut(s) 452, 1003
NlaIV GGNNCC 4 cut(s) 940, 1051, 1197, 1232
PaqCI CACCTGC 1 cut(s) 536
PctI GAATGC 2 cut(s) 695, 982
PdmI GAANNNNTTC 2 cut(s) 243, 1178
PfeI GAWTC 1 cut(s) 1085
PflFI GACNNNGTC 1 cut(s) 206
PflMI CCANNNNNTGG 2 cut(s) 953, 1205
PkrI GCNGC 8 cut(s) 358, 441, 982, 985, 1120, 1138, 1141, 1325
PmaCI CACGTG 1 cut(s) 1133
PmlI CACGTG 1 cut(s) 1133
Ppu21I YACGTR 1 cut(s) 1133
PpuMI RGGWCCY 1 cut(s) 725
Psp5II RGGWCCY 1 cut(s) 725
Psp6I CCWGG 1 cut(s) 48
PspCI CACGTG 1 cut(s) 1133
PspGI CCWGG 1 cut(s) 48
PspN4I GGNNCC 4 cut(s) 940, 1051, 1197, 1232
PspPI GGNCC 1 cut(s) 725
PspPPI RGGWCCY 1 cut(s) 725
PstI CTGCAG 2 cut(s) 733, 1144
PsyI GACNNNGTC 1 cut(s) 206
PvuII CAGCTG 1 cut(s) 1139
RsaI GTAC 5 cut(s) 637, 769, 778, 1061, 1226
RsaNI GTAC 5 cut(s) 636, 768, 777, 1060, 1225
RseI CAYNNNNRTG 1 cut(s) 1308
SaqAI TTAA 5 cut(s) 263, 426, 552, 704, 816
SatI GCNGC 8 cut(s) 357, 440, 981, 984, 1119, 1137, 1140, 1324
Sau3AI GATC 3 cut(s) 42, 1074, 1078
Sau96I GGNCC 1 cut(s) 725
ScaI AGTACT 1 cut(s) 1226
ScrFI CCNGG 1 cut(s) 50
SfaNI GCATC 2 cut(s) 574, 844
SfcI CTRYAG 2 cut(s) 729, 1140
SinI GGWCC 1 cut(s) 725
SmiMI CAYNNNNRTG 1 cut(s) 1308
SmlI CTYRAG 1 cut(s) 1327
SmoI CTYRAG 1 cut(s) 1327
SpeI ACTAGT 1 cut(s) 779
Sse9I AATT 5 cut(s) 413, 871, 1177, 1256, 1373
SsiI CCGC 6 cut(s) 46, 984, 1214, 1261, 1324, 1369
SspMI CTAG 1 cut(s) 780
StyD4I CCNGG 1 cut(s) 48
TaaI ACNGT 5 cut(s) 206, 352, 366, 1054, 1280
TaiI ACGT 3 cut(s) 704, 903, 1135
TaqI TCGA 7 cut(s) 32, 54, 247, 396, 622, 1077, 1306
TasI AATT 5 cut(s) 413, 871, 1177, 1256, 1373
TatI WGTACW 3 cut(s) 767, 1059, 1224
TauI GCSGC 2 cut(s) 986, 1326
TfiI GAWTC 1 cut(s) 1085
Tru1I TTAA 5 cut(s) 263, 426, 552, 704, 816
Tru9I TTAA 5 cut(s) 263, 426, 552, 704, 816
TscAI CASTG 4 cut(s) 211, 484, 738, 1210
TseI GCWGC 6 cut(s) 356, 439, 980, 1118, 1136, 1139
TspDTI ATGAA 3 cut(s) 318, 843, 1171
TspGWI ACGGA 3 cut(s) 141, 931, 1229
TspRI CASTG 4 cut(s) 211, 484, 738, 1210
Tth111I GACNNNGTC 1 cut(s) 206
Van91I CCANNNNNTGG 2 cut(s) 953, 1205
VpaK11BI GGWCC 1 cut(s) 725
XapI RAATTY 4 cut(s) 871, 1177, 1256, 1373
XcmI CCANNNNNNNNNTGG 1 cut(s) 520
XmnI GAANNNNTTC 2 cut(s) 243, 1178
XspI CTAG 1 cut(s) 780
ZrmI AGTACT 1 cut(s) 1226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.