Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001809.1

Orthogroup ID

OG0011399

Physical Location & Seq

Genomic Coordinates Forward (+)

200369 .. 202852

Gene Structure 2484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001809.1_g000040.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

atggcttccctcagcgaagaaaccgcgaagaaagttcttcgacaggttgagttctacttcagcgatagcaatcttccgagagacgattttctgaagaagtcgataagcgaaagcgaggatgggatgattagcttggctttgatatgctcgtttagtcggatgagaggtcatctcagtttgggggatttgaaggcggacgctatccctgaagatagcgttaaagctgttgctgaaaatcttagaaaatctaccactctcaagatttccgaagacgggcaaaaggttggtagggctacagaaatcttgaagccggaggaggttattgagcaagtagacattagaacagtagctgctgcaccgcttgagtttgatgtgaagcttgaggatgttgaaacctttttcggacaatttggcaaggttaacagcgtgaggctgcctcgtcatgttgcagataaaaagttgttctgtgggactgctttggttgagttttcaacagaggaagacgccaataagattctgaaggaaactctgaactatggaggtgttcagctagaactaaaaccaaagaaggaatttgacactgaaagagcaaaagagacggaggaatatgagaagactcgacccctcacaaattcaaatcgcaagaataacgcaaaaccagaggcagactaccctaaaggcttgattgttgcgtttaagctaaagagctcatcagataaagattctgctgagcataacggtactcctgaagatacaaaaaaggtggcaggagatgttaacacggaggatgctgagaaggacaataaggaaaatgttgatgagaaaaatagtttggatggtgaagaaaagaaaactgaagatggggaaaagccttctgaagaaggaaagggtggagagaaggaagaaagacttaatgctgtagaaacttacaaagataacatggacgttgttatgcgtgaggatttgaagaccctctttgggaagtttggcaccgtaaagtacattgacttcaagattggagaagaatcgggattcgttcggtttgaagaacctgaagcagctcacaaagcacgtgccgctgcagtccttaccgagctaggaggtcttgttgtgaaaaatttcattgctactctggaaccagttagtggcgaggccgagaaagagtactggaagaattttcgcggtagtcaagaaaaattccgtgaaagcaagggtggccatcgtggaaggggaggcaaacaccataggggtggttacaaacatggccgttcaagggatgataatgatggaggtcgcccaaacaaacaccggaagttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000049 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0030312 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071944 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko05322 map05322

Pfam Domains

Protein Families

La RRM_1 RRM_3

Protein Analysis

439

Amino Acids

49.19

Weight (kDa)

5.66

Isoelectric Point (pI)

33.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011399)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32720 AT4G32720
fragaria_vesca	FvH4_2g36050 FvH4_2g36050
malus_domestica	MD08G1117800.v1.1 MD15G1097300.v1.1
prunus_persica	Prupe.1G452100_v2.0.a1
pyrus_communis	pycom08g09840 pycom15g08920
rosa_chinensis	RchiOBHm_Chr6g0305801
rosa_laevigata	RLG00000010857
rosa_multiflora	Rmu_sc0001809.1_g000040 Rmu_sc0041759.1_g000001
rosa_roxburghii	Rroxscaffold_7G00162320
rosa_rugosa	Rorug06G0344000
rosa_samantha	Rh6AG455700 Rh6BG445400 Rh6CG469700 Rh6DG456400
rosa_wichuraiana	Rw6G039760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	989
AccB7I	CCANNNNNTGG	1 cut(s)	1145
AccI	GTMKAC	1 cut(s)	333
AccII	CGCG	2 cut(s)	26, 1182
AciI	CCGC	5 cut(s)	24, 194, 359, 1077, 1182
AcoI	YGGCCR	2 cut(s)	1216, 1264
AcsI	RAATTY	5 cut(s)	572, 631, 1117, 1174, 1196
AcuI	CTGAAG	8 cut(s)	43, 113, 228, 539, 768, 876, 897, 1074
AcvI	CACGTG	1 cut(s)	1073
AcyI	GRCGYC	1 cut(s)	504
AfaI	GTAC	3 cut(s)	742, 1001, 1166
AfiI	CCNNNNNNNGG	4 cut(s)	273, 978, 1145, 1273
AgsI	TTSAA	9 cut(s)	190, 307, 392, 492, 636, 967, 1012, 1046, 1272
AjuI	GAANNNNNNNTTGG	2 cut(s)	815, 847
AluBI	AGCT	9 cut(s)	132, 224, 350, 379, 550, 700, 708, 1061, 1096
AluI	AGCT	9 cut(s)	132, 224, 350, 379, 550, 700, 708, 1061, 1096
Alw21I	GWGCWC	1 cut(s)	710
Alw26I	GTCTC	2 cut(s)	75, 590
AlwNI	CAGNNNCTG	1 cut(s)	350
AoxI	GGCC	3 cut(s)	1152, 1216, 1264
ApeKI	GCWGC	5 cut(s)	350, 353, 433, 1058, 1079
ApoI	RAATTY	5 cut(s)	572, 631, 1117, 1174, 1196
Asp700I	GAANNNNTTC	1 cut(s)	1118
AsuHPI	GGTGA	1 cut(s)	851
BalI	TGGCCA	1 cut(s)	1218
BanI	GGYRCC	1 cut(s)	989
BanII	GRGCYC	1 cut(s)	710
BarI	GAAGNNNNNNTAC	2 cut(s)	992, 1024
BbrPI	CACGTG	1 cut(s)	1073
BbsI	GAAGAC	4 cut(s)	276, 507, 620, 974
Bbv12I	GWGCWC	1 cut(s)	710
BbvCI	CCTCAGC	1 cut(s)	11
BbvI	GCAGC	5 cut(s)	337, 340, 420, 1066, 1070
BccI	CCATC	5 cut(s)	113, 830, 854, 1227, 1280
BceAI	ACGGC	1 cut(s)	1251
BcoDI	GTCTC	2 cut(s)	75, 590
BfaI	CTAG	2 cut(s)	551, 1097
BfmI	CTRYAG	3 cut(s)	294, 918, 1080
BisI	GCNGC	6 cut(s)	351, 354, 434, 1059, 1077, 1080
BlpI	GCTNAGC	1 cut(s)	729
BlsI	GCNGC	6 cut(s)	352, 355, 435, 1060, 1078, 1081
BmcAI	AGTACT	1 cut(s)	1166
BmiI	GGNNCC	2 cut(s)	991, 1137
BmsI	GCATC	1 cut(s)	778
BpiI	GAAGAC	4 cut(s)	276, 507, 620, 974
BplI	GAGNNNNNCTC	4 cut(s)	156, 188, 421, 453
Bpu10I	CCTNAGC	1 cut(s)	11
Bpu1102I	GCTNAGC	1 cut(s)	729
BpuEI	CTTGAG	3 cut(s)	242, 383, 401
BsaAI	YACGTR	1 cut(s)	1073
BsaBI	GATNNNNATC	1 cut(s)	69
BsaHI	GRCGYC	1 cut(s)	504
BsaWI	WCCGGW	1 cut(s)	1308
BsaXI	ACNNNNNCTCC	2 cut(s)	1092, 1122
Bsc4I	CCNNNNNNNGG	4 cut(s)	273, 978, 1145, 1273
Bse1I	ACTGG	2 cut(s)	1139, 1172
Bse3DI	GCAATG	1 cut(s)	1122
Bse8I	GATNNNNATC	1 cut(s)	69
BseGI	GGATG	7 cut(s)	124, 129, 165, 391, 793, 841, 1282
BseJI	GATNNNNATC	1 cut(s)	69
BseLI	CCNNNNNNNGG	4 cut(s)	273, 978, 1145, 1273
BseMI	GCAATG	1 cut(s)	1122
BseMII	CTCAG	4 cut(s)	25, 187, 720, 783
BseNI	ACTGG	2 cut(s)	1139, 1172
BseRI	GAGGAG	1 cut(s)	329
BseXI	GCAGC	5 cut(s)	337, 340, 420, 1066, 1070
BsgI	GTGCAG	1 cut(s)	339
Bsh1236I	CGCG	2 cut(s)	26, 1182
BshFI	GGCC	3 cut(s)	1154, 1218, 1266
BshNI	GGYRCC	1 cut(s)	989
BsiHKAI	GWGCWC	1 cut(s)	710
BsiSI	CCGG	2 cut(s)	311, 1309
BslFI	GGGAC	1 cut(s)	484
BslI	CCNNNNNNNGG	4 cut(s)	273, 978, 1145, 1273
BsmAI	GTCTC	2 cut(s)	75, 590
BsmBI	CGTCTC	2 cut(s)	75, 590
BsmFI	GGGAC	1 cut(s)	484
BsnI	GGCC	3 cut(s)	1154, 1218, 1266
Bsp1286I	GDGCHC	1 cut(s)	710
Bsp1720I	GCTNAGC	1 cut(s)	729
BspACI	CCGC	5 cut(s)	24, 194, 359, 1077, 1182
BspANI	GGCC	3 cut(s)	1154, 1218, 1266
BspCNI	CTCAG	4 cut(s)	24, 186, 721, 784
BspFNI	CGCG	2 cut(s)	26, 1182
BspLI	GGNNCC	2 cut(s)	991, 1137
BspMAI	CTGCAG	1 cut(s)	1084
BspT107I	GGYRCC	1 cut(s)	989
BsrDI	GCAATG	1 cut(s)	1122
BsrI	ACTGG	2 cut(s)	1139, 1172
BssNI	GRCGYC	1 cut(s)	504
Bst4CI	ACNGT	3 cut(s)	346, 740, 994
BstACI	GRCGYC	1 cut(s)	504
BstBAI	YACGTR	1 cut(s)	1073
BstDEI	CTNAG	5 cut(s)	11, 173, 239, 729, 792
BstF5I	GGATG	7 cut(s)	124, 129, 165, 391, 793, 841, 1282
BstFNI	CGCG	2 cut(s)	26, 1182
BstMAI	GTCTC	2 cut(s)	75, 590
BstMWI	GCNNNNNNNGC	3 cut(s)	1067, 1076, 1215
BstSFI	CTRYAG	3 cut(s)	294, 918, 1080
BstUI	CGCG	2 cut(s)	26, 1182
BstV1I	GCAGC	5 cut(s)	337, 340, 420, 1066, 1070
BstV2I	GAAGAC	4 cut(s)	276, 507, 620, 974
BstXI	CCANNNNNNTGG	1 cut(s)	1250
BsuRI	GGCC	3 cut(s)	1154, 1218, 1266
BtsCI	GGATG	7 cut(s)	124, 129, 165, 391, 793, 841, 1282
BtsIMutI	CAGTG	1 cut(s)	579
CaiI	CAGNNNCTG	1 cut(s)	350
CseI	GACGC	2 cut(s)	206, 512
Csp6I	GTAC	3 cut(s)	741, 1000, 1165
CspCI	CAANNNNNGTGG	2 cut(s)	744, 779
CviAII	CATG	3 cut(s)	443, 940, 1262
CviQI	GTAC	3 cut(s)	741, 1000, 1165
DdeI	CTNAG	5 cut(s)	11, 173, 239, 729, 792
EaeI	YGGCCR	2 cut(s)	1216, 1264
EciI	GGCGGA	1 cut(s)	209
Ecl136II	GAGCTC	1 cut(s)	708
Eco24I	GRGCYC	1 cut(s)	710
Eco53kI	GAGCTC	1 cut(s)	708
Eco57I	CTGAAG	8 cut(s)	43, 113, 228, 539, 768, 876, 897, 1074
Eco72I	CACGTG	1 cut(s)	1073
EcoICRI	GAGCTC	1 cut(s)	708
EcoT38I	GRGCYC	1 cut(s)	710
Esp3I	CGTCTC	2 cut(s)	75, 590
FaeI	CATG	3 cut(s)	446, 943, 1265
FaiI	YATR	9 cut(s)	145, 444, 537, 609, 735, 941, 953, 1245, 1263
FalI	AAGNNNNNCTT	4 cut(s)	894, 926, 959, 991
FaqI	GGGAC	1 cut(s)	484
FatI	CATG	3 cut(s)	442, 939, 1261
FblI	GTMKAC	1 cut(s)	333
Fnu4HI	GCNGC	6 cut(s)	351, 354, 434, 1059, 1077, 1080
FokI	GGATG	7 cut(s)	131, 136, 172, 398, 800, 848, 1289
FriOI	GRGCYC	1 cut(s)	710
Fsp4HI	GCNGC	6 cut(s)	351, 354, 434, 1059, 1077, 1080
FspBI	CTAG	2 cut(s)	551, 1097
GluI	GCNGC	6 cut(s)	351, 354, 434, 1059, 1077, 1080
HaeIII	GGCC	3 cut(s)	1154, 1218, 1266
HapII	CCGG	2 cut(s)	311, 1309
HgaI	GACGC	2 cut(s)	206, 512
Hin1I	GRCGYC	1 cut(s)	504
Hin1II	CATG	3 cut(s)	446, 943, 1265
HincII	GTYRAC	2 cut(s)	421, 778
HindII	GTYRAC	2 cut(s)	421, 778
HindIII	AAGCTT	1 cut(s)	377
HinfI	GANTC	5 cut(s)	514, 616, 722, 1025, 1032
HpaI	GTTAAC	2 cut(s)	421, 778
HpaII	CCGG	2 cut(s)	311, 1309
HphI	GGTGA	1 cut(s)	851
Hpy166II	GTNNAC	3 cut(s)	334, 421, 778
Hpy188I	TCNGA	9 cut(s)	78, 93, 159, 268, 404, 519, 531, 715, 877
Hpy188III	TCNNGA	7 cut(s)	259, 304, 746, 1012, 1029, 1133, 1190
Hpy8I	GTNNAC	3 cut(s)	334, 421, 778
HpyAV	CCTTC	8 cut(s)	184, 514, 562, 790, 875, 882, 892, 1221
HpyCH4III	ACNGT	3 cut(s)	346, 740, 994
HpyCH4IV	ACGT	2 cut(s)	945, 1072
HpyCH4V	TGCA	3 cut(s)	356, 449, 1082
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1067, 1076, 1215
HpyF3I	CTNAG	5 cut(s)	11, 173, 239, 729, 792
HpySE526I	ACGT	2 cut(s)	945, 1072
Hsp92I	GRCGYC	1 cut(s)	504
Hsp92II	CATG	3 cut(s)	446, 943, 1265
KspAI	GTTAAC	2 cut(s)	421, 778
Lsp1109I	GCAGC	5 cut(s)	337, 340, 420, 1066, 1070
LweI	GCATC	1 cut(s)	778
MaeI	CTAG	2 cut(s)	551, 1097
MaeII	ACGT	2 cut(s)	945, 1072
MaeIII	GTNAC	1 cut(s)	1253
MhlI	GDGCHC	1 cut(s)	710
MlsI	TGGCCA	1 cut(s)	1218
MluCI	AATT	6 cut(s)	407, 572, 631, 1117, 1174, 1196
MluNI	TGGCCA	1 cut(s)	1218
MlyI	GAGTC	1 cut(s)	610
MmeI	TCCRAC	1 cut(s)	137
Mox20I	TGGCCA	1 cut(s)	1218
MroXI	GAANNNNTTC	1 cut(s)	1118
MscI	TGGCCA	1 cut(s)	1218
MseI	TTAA	5 cut(s)	219, 420, 696, 777, 912
MslI	CAYNNNNRTG	1 cut(s)	1248
Msp20I	TGGCCA	1 cut(s)	1218
MspA1I	CMGCKG	1 cut(s)	1079
MspI	CCGG	2 cut(s)	311, 1309
MvnI	CGCG	2 cut(s)	26, 1182
MwoI	GCNNNNNNNGC	3 cut(s)	1067, 1076, 1215
NlaIII	CATG	3 cut(s)	446, 943, 1265
NlaIV	GGNNCC	2 cut(s)	991, 1137
NmeAIII	GCCGAG	1 cut(s)	1180
PdmI	GAANNNNTTC	1 cut(s)	1118
PfeI	GAWTC	4 cut(s)	514, 722, 1025, 1032
PflMI	CCANNNNNTGG	1 cut(s)	1145
PkrI	GCNGC	6 cut(s)	352, 355, 435, 1060, 1078, 1081
PleI	GAGTC	1 cut(s)	610
PmaCI	CACGTG	1 cut(s)	1073
PmlI	CACGTG	1 cut(s)	1073
PpsI	GAGTC	1 cut(s)	610
Ppu21I	YACGTR	1 cut(s)	1073
Psp124BI	GAGCTC	1 cut(s)	710
PspCI	CACGTG	1 cut(s)	1073
PspN4I	GGNNCC	2 cut(s)	991, 1137
PstI	CTGCAG	1 cut(s)	1084
PstNI	CAGNNNCTG	1 cut(s)	350
RsaI	GTAC	3 cut(s)	742, 1001, 1166
RsaNI	GTAC	3 cut(s)	741, 1000, 1165
RseI	CAYNNNNRTG	1 cut(s)	1248
SacI	GAGCTC	1 cut(s)	710
SaqAI	TTAA	5 cut(s)	219, 420, 696, 777, 912
SatI	GCNGC	6 cut(s)	351, 354, 434, 1059, 1077, 1080
ScaI	AGTACT	1 cut(s)	1166
SchI	GAGTC	1 cut(s)	610
SduI	GDGCHC	1 cut(s)	710
SfaNI	GCATC	1 cut(s)	778
SfcI	CTRYAG	3 cut(s)	294, 918, 1080
SmiMI	CAYNNNNRTG	1 cut(s)	1248
SmlI	CTYRAG	3 cut(s)	257, 362, 380
SmoI	CTYRAG	3 cut(s)	257, 362, 380
Sse9I	AATT	6 cut(s)	407, 572, 631, 1117, 1174, 1196
SsiI	CCGC	5 cut(s)	24, 194, 359, 1077, 1182
SspMI	CTAG	2 cut(s)	551, 1097
SstI	GAGCTC	1 cut(s)	710
TaaI	ACNGT	3 cut(s)	346, 740, 994
TaiI	ACGT	2 cut(s)	948, 1075
TaqI	TCGA	3 cut(s)	40, 101, 619
TasI	AATT	6 cut(s)	407, 572, 631, 1117, 1174, 1196
TatI	WGTACW	2 cut(s)	999, 1164
TauI	GCSGC	1 cut(s)	1079
TfiI	GAWTC	4 cut(s)	514, 722, 1025, 1032
Tru1I	TTAA	5 cut(s)	219, 420, 696, 777, 912
Tru9I	TTAA	5 cut(s)	219, 420, 696, 777, 912
TscAI	CASTG	1 cut(s)	586
TseI	GCWGC	5 cut(s)	350, 353, 433, 1058, 1079
TspDTI	ATGAA	1 cut(s)	1111
TspGWI	ACGGA	3 cut(s)	614, 797, 1190
TspRI	CASTG	1 cut(s)	586
Van91I	CCANNNNNTGG	1 cut(s)	1145
XapI	RAATTY	5 cut(s)	572, 631, 1117, 1174, 1196
XmiI	GTMKAC	1 cut(s)	333
XmnI	GAANNNNTTC	1 cut(s)	1118
XspI	CTAG	2 cut(s)	551, 1097
ZrmI	AGTACT	1 cut(s)	1166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.