Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0011399

Physical Location & Seq

Genomic Coordinates Reverse (-)

26474565 .. 26477415

Gene Structure 2851 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g36050.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGGCTTCCCTCAACGAAGAAACCGCCAAGAAAGTTCTTCGCCAGGTTGAGTTCTACTTCAGCGATAGCAATCTCCCCAGAGACGAGTTTCTGAAGAAATCGATAAGCGAAAGCGAGGACGGGATGATCAGCTTGGCGTTGATATGCTCGTTCAGTCGGATGAGAGGTCATCTTGGTTTGGGGGATTTGAAGGCCGACGCTATTCCTGAAGATAGCGTTAAAGCTGTTGCTGAGACTCTGAGGAAATCCACCACTCTCAAGATTTCCGAAGACGGGGAAAAGGTTGGTAGGGCTACCGAAATCCTGAAGCCCGAGGAGGTTATCGAGCAAGTAGATATTAGGACAGTAGCCACTGCACCGCTTGAGTTTGATGTGAAGCTTGAGGATGTTGAAACATTTTTCGGACAATTCGGCAAGGTTAACAGCGTGAGGCTGCCTCGTCATGTTGCAGATAAAAAGTTGTTCTGTGGGACTGCTTTGGTTGAGTTTTCAACAGAGGAAGATGCCAATAAGATTCTCACCGAAACTTTGAACTATGGAGGTGTTCAGTTGGAACTAAAACCAAAGAAGGAATTTGACACTGAAAGAGCAAAAGAGACAGAAGAATATGAGAAGACTCGACCACTCACAAATTCAAATCGCAAGAATAACGCAAAGCCAGAGGAAGACTACCCTAAAGGCTTGATTGTTGCATTTACGTTAAAGAGCTCATCAGATAAAGATTCTGCTGAGAAAAACGGTACTCCTGAAGAAACAAAAAAGGAGGCAGGAGATGTTAACGCGGAGGATGGTGAGAAGGATAATAAGGAAAATGTTGATGAGAAAAATAGTTTGGATGGTGAAGAGAAGAAAACTGAAGATGGGGAAAAGCCTTCTGAAGGAGTAAAGGAGGGAGAGAAGGAAGAAAAACTTAATGCTGTAGAAACTTACAAAGATAACATGGATGTTGTTATGCGTGAGGATTTGAAGATCCTATTCGGAAAATTTGGCACTGTAAAGTACATTGACTTCAAGATTGGAGAAGTATCAGGATTCGTTCGGTTTGAAGAACCCGAAGCAGCTCATAAAGCACGTGCTGCTGCAGTGCTTACTGAGCTAGGAGGTCTTGTTGTGAAAAATTTCATTGCTACTTTGGAACCAGTCAGTGGTGAGGCTGAGAAGGAGTACTGGAAGAATTTCCGCGGTAGTCAAGAGAAGTTCCGCGAAAGCAAGGGTGGCAATCGTGGAAGGGGTGGCAAATACCATAGGGGTGGTCACAAACACGGCCGTTCAAGGGATGACAACAATGGAGGTCGCCCAAACAAACACAGGAAGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000049 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0030312 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071944 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko05322 map05322

Pfam Domains

Protein Families

La RRM_1 RRM_3

Protein Analysis

440

Amino Acids

49.19

Weight (kDa)

5.44

Isoelectric Point (pI)

34.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
La	PF05383	13 - 56	1.4e-18	La domain
RRM_1	PF00076	121 - 174	4.9e-09	RNA recognition motif
RRM_3	PF08777	317 - 410	5.8e-20	RNA binding motif
RRM_1	PF00076	319 - 368	1e-05	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011399)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32720 AT4G32720
fragaria_vesca	FvH4_2g36050 FvH4_2g36050
malus_domestica	MD08G1117800.v1.1 MD15G1097300.v1.1
prunus_persica	Prupe.1G452100_v2.0.a1
pyrus_communis	pycom08g09840 pycom15g08920
rosa_chinensis	RchiOBHm_Chr6g0305801
rosa_laevigata	RLG00000010857
rosa_multiflora	Rmu_sc0001809.1_g000040 Rmu_sc0041759.1_g000001
rosa_roxburghii	Rroxscaffold_7G00162320
rosa_rugosa	Rorug06G0344000
rosa_samantha	Rh6AG455700 Rh6BG445400 Rh6CG469700 Rh6DG456400
rosa_wichuraiana	Rw6G039760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1145
AccII	CGCG	3 cut(s)	782, 1182, 1203
AciI	CCGC	6 cut(s)	24, 359, 782, 1180, 1182, 1201
AclWI	GGATC	1 cut(s)	964
AcoI	YGGCCR	1 cut(s)	1264
AcsI	RAATTY	5 cut(s)	572, 631, 983, 1117, 1174
AcuI	CTGAAG	7 cut(s)	43, 113, 228, 326, 768, 876, 897
AcvI	CACGTG	1 cut(s)	1073
AfaI	GTAC	3 cut(s)	742, 1001, 1166
AfiI	CCNNNNNNNGG	4 cut(s)	273, 878, 1145, 1273
AgsI	TTSAA	9 cut(s)	190, 392, 492, 532, 636, 967, 1012, 1046, 1272
AjnI	CCWGG	1 cut(s)	42
AjuI	GAANNNNNNNTTGG	2 cut(s)	815, 847
AluBI	AGCT	6 cut(s)	132, 224, 379, 708, 1061, 1096
AluI	AGCT	6 cut(s)	132, 224, 379, 708, 1061, 1096
Alw21I	GWGCWC	1 cut(s)	710
Alw26I	GTCTC	3 cut(s)	75, 227, 590
AlwI	GGATC	1 cut(s)	964
Ama87I	CYCGRG	1 cut(s)	311
AoxI	GGCC	2 cut(s)	192, 1264
ApeKI	GCWGC	4 cut(s)	433, 1058, 1076, 1079
ApoI	RAATTY	5 cut(s)	572, 631, 983, 1117, 1174
Asp700I	GAANNNNTTC	2 cut(s)	1118, 1175
AsuHPI	GGTGA	4 cut(s)	511, 803, 851, 1160
AvaI	CYCGRG	1 cut(s)	311
BanII	GRGCYC	1 cut(s)	710
BarI	GAAGNNNNNNTAC	2 cut(s)	992, 1024
BbrPI	CACGTG	1 cut(s)	1073
BbsI	GAAGAC	3 cut(s)	276, 620, 672
Bbv12I	GWGCWC	1 cut(s)	710
BbvI	GCAGC	4 cut(s)	420, 1063, 1066, 1070
BccI	CCATC	3 cut(s)	782, 830, 854
BceAI	ACGGC	2 cut(s)	1251, 1279
BciT130I	CCWGG	1 cut(s)	44
BclI	TGATCA	1 cut(s)	126
BcoDI	GTCTC	3 cut(s)	75, 227, 590
BfaI	CTAG	1 cut(s)	1097
BfmI	CTRYAG	2 cut(s)	918, 1080
BisI	GCNGC	4 cut(s)	434, 1059, 1077, 1080
BlsI	GCNGC	4 cut(s)	435, 1060, 1078, 1081
BmcAI	AGTACT	1 cut(s)	1166
Bme1390I	CCNGG	1 cut(s)	44
BmeT110I	CYCGRG	1 cut(s)	311
BmiI	GGNNCC	1 cut(s)	1137
BmrFI	CCNGG	1 cut(s)	44
BmsI	GCATC	1 cut(s)	493
BpiI	GAAGAC	3 cut(s)	276, 620, 672
BplI	GAGNNNNNCTC	2 cut(s)	421, 453
BpuEI	CTTGAG	3 cut(s)	242, 383, 401
Bsa29I	ATCGAT	1 cut(s)	101
BsaAI	YACGTR	1 cut(s)	1073
BsaBI	GATNNNNATC	1 cut(s)	69
BsaJI	CCNNGG	2 cut(s)	312, 1180
BsaXI	ACNNNNNCTCC	2 cut(s)	1092, 1122
Bsc4I	CCNNNNNNNGG	4 cut(s)	273, 878, 1145, 1273
Bse1I	ACTGG	2 cut(s)	1139, 1172
Bse3DI	GCAATG	1 cut(s)	1122
Bse8I	GATNNNNATC	1 cut(s)	69
BseBI	CCWGG	1 cut(s)	44
BseCI	ATCGAT	1 cut(s)	101
BseDI	CCNNGG	2 cut(s)	312, 1180
BseGI	GGATG	7 cut(s)	129, 165, 391, 793, 841, 949, 1282
BseJI	GATNNNNATC	1 cut(s)	69
BseLI	CCNNNNNNNGG	4 cut(s)	273, 878, 1145, 1273
BseMI	GCAATG	1 cut(s)	1122
BseMII	CTCAG	5 cut(s)	222, 230, 720, 1083, 1146
BseNI	ACTGG	2 cut(s)	1139, 1172
BseRI	GAGGAG	1 cut(s)	329
BseX3I	CGGCCG	1 cut(s)	1264
BseXI	GCAGC	4 cut(s)	420, 1063, 1066, 1070
BsgI	GTGCAG	1 cut(s)	339
Bsh1236I	CGCG	3 cut(s)	782, 1182, 1203
Bsh1285I	CGRYCG	1 cut(s)	1267
BshFI	GGCC	2 cut(s)	194, 1266
BshVI	ATCGAT	1 cut(s)	101
BsiEI	CGRYCG	1 cut(s)	1267
BsiHKAI	GWGCWC	1 cut(s)	710
BsiHKCI	CYCGRG	1 cut(s)	311
BslFI	GGGAC	1 cut(s)	484
BslI	CCNNNNNNNGG	4 cut(s)	273, 878, 1145, 1273
BsmAI	GTCTC	3 cut(s)	75, 227, 590
BsmBI	CGTCTC	1 cut(s)	75
BsmFI	GGGAC	1 cut(s)	484
BsnI	GGCC	2 cut(s)	194, 1266
BsoBI	CYCGRG	1 cut(s)	311
Bsp1286I	GDGCHC	1 cut(s)	710
Bsp143I	GATC	2 cut(s)	126, 969
BspACI	CCGC	6 cut(s)	24, 359, 782, 1180, 1182, 1201
BspANI	GGCC	2 cut(s)	194, 1266
BspCNI	CTCAG	5 cut(s)	223, 231, 721, 1084, 1147
BspDI	ATCGAT	1 cut(s)	101
BspFNI	CGCG	3 cut(s)	782, 1182, 1203
BspLI	GGNNCC	1 cut(s)	1137
BspMAI	CTGCAG	1 cut(s)	1084
BspPI	GGATC	1 cut(s)	964
BsrDI	GCAATG	1 cut(s)	1122
BsrI	ACTGG	2 cut(s)	1139, 1172
BssECI	CCNNGG	2 cut(s)	312, 1180
BssMI	GATC	2 cut(s)	126, 969
Bst2UI	CCWGG	1 cut(s)	44
Bst4CI	ACNGT	3 cut(s)	346, 740, 994
Bst6I	CTCTTC	1 cut(s)	837
BstAPI	GCANNNNNTGC	1 cut(s)	1076
BstBAI	YACGTR	1 cut(s)	1073
BstDEI	CTNAG	5 cut(s)	231, 239, 729, 1092, 1155
BstDSI	CCRYGG	1 cut(s)	1180
BstENI	CCTNNNNNAGG	1 cut(s)	876
BstF5I	GGATG	7 cut(s)	129, 165, 391, 793, 841, 949, 1282
BstFNI	CGCG	3 cut(s)	782, 1182, 1203
BstKTI	GATC	2 cut(s)	129, 972
BstMAI	GTCTC	3 cut(s)	75, 227, 590
BstMBI	GATC	2 cut(s)	126, 969
BstMCI	CGRYCG	1 cut(s)	1267
BstMWI	GCNNNNNNNGC	4 cut(s)	1067, 1076, 1093, 1215
BstNI	CCWGG	1 cut(s)	44
BstSCI	CCNGG	1 cut(s)	42
BstSFI	CTRYAG	2 cut(s)	918, 1080
BstUI	CGCG	3 cut(s)	782, 1182, 1203
BstV1I	GCAGC	4 cut(s)	420, 1063, 1066, 1070
BstV2I	GAAGAC	3 cut(s)	276, 620, 672
BstX2I	RGATCY	1 cut(s)	969
BstXI	CCANNNNNNTGG	1 cut(s)	1250
BstYI	RGATCY	1 cut(s)	969
BstZI	CGGCCG	1 cut(s)	1264
Bsu15I	ATCGAT	1 cut(s)	101
BsuRI	GGCC	2 cut(s)	194, 1266
BsuTUI	ATCGAT	1 cut(s)	101
BtgI	CCRYGG	1 cut(s)	1180
BtsCI	GGATG	7 cut(s)	129, 165, 391, 793, 841, 949, 1282
BtsI	GCAGTG	2 cut(s)	351, 1089
BtsIMutI	CAGTG	5 cut(s)	351, 579, 990, 1089, 1150
Cfr42I	CCGCGG	1 cut(s)	1183
ClaI	ATCGAT	1 cut(s)	101
CseI	GACGC	1 cut(s)	206
Csp6I	GTAC	3 cut(s)	741, 1000, 1165
CviAII	CATG	2 cut(s)	443, 940
CviQI	GTAC	3 cut(s)	741, 1000, 1165
DdeI	CTNAG	5 cut(s)	231, 239, 729, 1092, 1155
DpnI	GATC	2 cut(s)	128, 971
DpnII	GATC	2 cut(s)	126, 969
EaeI	YGGCCR	1 cut(s)	1264
EagI	CGGCCG	1 cut(s)	1264
Eam1104I	CTCTTC	1 cut(s)	837
EarI	CTCTTC	1 cut(s)	837
Ecl136II	GAGCTC	1 cut(s)	708
EclXI	CGGCCG	1 cut(s)	1264
Eco24I	GRGCYC	1 cut(s)	710
Eco52I	CGGCCG	1 cut(s)	1264
Eco53kI	GAGCTC	1 cut(s)	708
Eco57I	CTGAAG	7 cut(s)	43, 113, 228, 326, 768, 876, 897
Eco72I	CACGTG	1 cut(s)	1073
Eco88I	CYCGRG	1 cut(s)	311
EcoICRI	GAGCTC	1 cut(s)	708
EcoNI	CCTNNNNNAGG	1 cut(s)	876
EcoRII	CCWGG	1 cut(s)	42
EcoT38I	GRGCYC	1 cut(s)	710
Esp3I	CGTCTC	1 cut(s)	75
FaeI	CATG	2 cut(s)	446, 943
FaiI	YATR	8 cut(s)	145, 444, 537, 609, 941, 953, 1065, 1245
FalI	AAGNNNNNCTT	2 cut(s)	894, 926
FaqI	GGGAC	1 cut(s)	484
FatI	CATG	2 cut(s)	442, 939
FbaI	TGATCA	1 cut(s)	126
Fnu4HI	GCNGC	4 cut(s)	434, 1059, 1077, 1080
FokI	GGATG	7 cut(s)	136, 172, 398, 800, 848, 956, 1289
FriOI	GRGCYC	1 cut(s)	710
Fsp4HI	GCNGC	4 cut(s)	434, 1059, 1077, 1080
FspBI	CTAG	1 cut(s)	1097
GluI	GCNGC	4 cut(s)	434, 1059, 1077, 1080
HaeIII	GGCC	2 cut(s)	194, 1266
HgaI	GACGC	1 cut(s)	206
Hin1II	CATG	2 cut(s)	446, 943
HincII	GTYRAC	2 cut(s)	421, 778
HindII	GTYRAC	2 cut(s)	421, 778
HindIII	AAGCTT	1 cut(s)	377
HinfI	GANTC	5 cut(s)	235, 514, 616, 722, 1032
HpaI	GTTAAC	2 cut(s)	421, 778
HphI	GGTGA	4 cut(s)	511, 803, 851, 1160
Hpy166II	GTNNAC	2 cut(s)	421, 778
Hpy188I	TCNGA	8 cut(s)	93, 159, 240, 268, 404, 715, 877, 980
Hpy188III	TCNNGA	7 cut(s)	206, 259, 304, 746, 1012, 1029, 1190
Hpy8I	GTNNAC	2 cut(s)	421, 778
Hpy99I	CGWCG	1 cut(s)	200
HpyAV	CCTTC	8 cut(s)	184, 562, 790, 872, 882, 892, 1153, 1221
HpyCH4III	ACNGT	3 cut(s)	346, 740, 994
HpyCH4IV	ACGT	2 cut(s)	698, 1072
HpyCH4V	TGCA	4 cut(s)	356, 449, 692, 1082
HpyF10VI	GCNNNNNNNGC	4 cut(s)	1067, 1076, 1093, 1215
HpyF3I	CTNAG	5 cut(s)	231, 239, 729, 1092, 1155
HpySE526I	ACGT	2 cut(s)	698, 1072
Hsp92II	CATG	2 cut(s)	446, 943
Ksp22I	TGATCA	1 cut(s)	126
KspAI	GTTAAC	2 cut(s)	421, 778
KspI	CCGCGG	1 cut(s)	1183
Kzo9I	GATC	2 cut(s)	126, 969
Lsp1109I	GCAGC	4 cut(s)	420, 1063, 1066, 1070
LweI	GCATC	1 cut(s)	493
MaeI	CTAG	1 cut(s)	1097
MaeII	ACGT	2 cut(s)	698, 1072
MaeIII	GTNAC	1 cut(s)	1253
MalI	GATC	2 cut(s)	128, 971
MboI	GATC	2 cut(s)	126, 969
MflI	RGATCY	1 cut(s)	969
MhlI	GDGCHC	1 cut(s)	710
MluCI	AATT	6 cut(s)	407, 572, 631, 983, 1117, 1174
MlyI	GAGTC	2 cut(s)	229, 610
MmeI	TCCRAC	2 cut(s)	137, 531
MroXI	GAANNNNTTC	2 cut(s)	1118, 1175
MseI	TTAA	5 cut(s)	219, 420, 701, 777, 912
MslI	CAYNNNNRTG	1 cut(s)	1248
MspA1I	CMGCKG	1 cut(s)	1182
MspR9I	CCNGG	1 cut(s)	44
MvaI	CCWGG	1 cut(s)	44
MvnI	CGCG	3 cut(s)	782, 1182, 1203
MwoI	GCNNNNNNNGC	4 cut(s)	1067, 1076, 1093, 1215
NdeII	GATC	2 cut(s)	126, 969
NlaIII	CATG	2 cut(s)	446, 943
NlaIV	GGNNCC	1 cut(s)	1137
NmuCI	GTSAC	1 cut(s)	1253
PdmI	GAANNNNTTC	2 cut(s)	1118, 1175
PfeI	GAWTC	3 cut(s)	514, 722, 1032
PflMI	CCANNNNNTGG	1 cut(s)	1145
PkrI	GCNGC	4 cut(s)	435, 1060, 1078, 1081
PleI	GAGTC	2 cut(s)	229, 610
PmaCI	CACGTG	1 cut(s)	1073
PmlI	CACGTG	1 cut(s)	1073
PpsI	GAGTC	2 cut(s)	229, 610
Ppu21I	YACGTR	1 cut(s)	1073
Psp124BI	GAGCTC	1 cut(s)	710
Psp6I	CCWGG	1 cut(s)	42
PspCI	CACGTG	1 cut(s)	1073
PspGI	CCWGG	1 cut(s)	42
PspN4I	GGNNCC	1 cut(s)	1137
PstI	CTGCAG	1 cut(s)	1084
PsuI	RGATCY	1 cut(s)	969
RsaI	GTAC	3 cut(s)	742, 1001, 1166
RsaNI	GTAC	3 cut(s)	741, 1000, 1165
RseI	CAYNNNNRTG	1 cut(s)	1248
SacI	GAGCTC	1 cut(s)	710
SacII	CCGCGG	1 cut(s)	1183
SaqAI	TTAA	5 cut(s)	219, 420, 701, 777, 912
SatI	GCNGC	4 cut(s)	434, 1059, 1077, 1080
Sau3AI	GATC	2 cut(s)	126, 969
ScaI	AGTACT	1 cut(s)	1166
SchI	GAGTC	2 cut(s)	229, 610
ScrFI	CCNGG	1 cut(s)	44
SduI	GDGCHC	1 cut(s)	710
SfaNI	GCATC	1 cut(s)	493
SfcI	CTRYAG	2 cut(s)	918, 1080
Sfr303I	CCGCGG	1 cut(s)	1183
SgrBI	CCGCGG	1 cut(s)	1183
SmiMI	CAYNNNNRTG	1 cut(s)	1248
SmlI	CTYRAG	3 cut(s)	257, 362, 380
SmoI	CTYRAG	3 cut(s)	257, 362, 380
Sse9I	AATT	6 cut(s)	407, 572, 631, 983, 1117, 1174
SsiI	CCGC	6 cut(s)	24, 359, 782, 1180, 1182, 1201
SspMI	CTAG	1 cut(s)	1097
SstI	GAGCTC	1 cut(s)	710
StyD4I	CCNGG	1 cut(s)	42
TaaI	ACNGT	3 cut(s)	346, 740, 994
TaiI	ACGT	2 cut(s)	701, 1075
TaqI	TCGA	3 cut(s)	101, 324, 619
TasI	AATT	6 cut(s)	407, 572, 631, 983, 1117, 1174
TatI	WGTACW	2 cut(s)	999, 1164
TfiI	GAWTC	3 cut(s)	514, 722, 1032
Tru1I	TTAA	5 cut(s)	219, 420, 701, 777, 912
Tru9I	TTAA	5 cut(s)	219, 420, 701, 777, 912
TscAI	CASTG	5 cut(s)	358, 586, 997, 1089, 1150
TseFI	GTSAC	1 cut(s)	1253
TseI	GCWGC	4 cut(s)	433, 1058, 1076, 1079
Tsp45I	GTSAC	1 cut(s)	1253
TspDTI	ATGAA	1 cut(s)	1111
TspRI	CASTG	5 cut(s)	358, 586, 997, 1089, 1150
Van91I	CCANNNNNTGG	1 cut(s)	1145
XagI	CCTNNNNNAGG	1 cut(s)	876
XapI	RAATTY	5 cut(s)	572, 631, 983, 1117, 1174
XmnI	GAANNNNTTC	2 cut(s)	1118, 1175
XspI	CTAG	1 cut(s)	1097
ZrmI	AGTACT	1 cut(s)	1166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.