Rh6AG455700

La protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0011399
Physical Location & Seq
Forward (+)
64031879 .. 64034649
2771 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG455700.1

Sequence Viewer

Length: 1320 bp
ATGGCTTCCCTCAGCGAAGAAACCGCGAAGAAAGTTCTTCGACAGGTTGAGTTCTACTTCAGCGATAGCAATCTTCCTAGAGACGATTTTCTGAAGAAGTCGATAAGCGAAAGCGAGGATGGGATGATTAGCTTGGCTTTGATATGCTCGTTTAGTCGGATGAGAGGTCATCTCAGTTTGGGGGATTTGAAGGCCGACGCTATCCCTGAAGATAGCGTTAAAGCTGTTGCTGAAACTCTTAGAAAATCTACCACTCTCAAGATTTCCGAAGACGGGCAAAAGGTTGGTAGGGCTACAGAAATCTTGAAGCCCGAGGAGGTTATTGAGCAAGTAGACATTAGAACAGTAGCTGCTGCACCGCTTGAGTTTGATGTGAAGCTCGAGGATGTTGAAACCTTTTTCGGACAATTTGGCAAGGTTAACAGCGTGAGGCTGCCTCGTCATGTTGCAGATAAAAAGTTGTTCTGTGGGACTGCTTTGGTTGAGTTTTCAACAGAGGAAGACGCCAATAAGATTCTGAAGGAAACTCTGAACTATGGAGGTGTTCAGCTAGAACTAAAACCAAAGAAGGAATTTGACACTGAAAGAGCAAAAGAGACGGAGGAATATGAGAAGACTCGACCCCTCACAAATTCAAATCGCAAGAATAATGCAAAACCAGAGGCAGACTACCCTAAAGGCTTGATTGTTGCGTTTAAGCTAAAGAGCTCATCAGATAAAGATTCTGCTGAGCATAACGGTACTCCTGAAGATACAAAAAAGGTGGCTGGAGATGTTAACACGGAGGATGCTGAGAAGGACAATAAGGAAAATGTTGATGAGAAAAATAGTTTGGATGGTGAAGAAAAGAAAACTGAAGATGGGGAAAAGCCTTCTGAAGAAGGAAAGGGTGGAGAGAAGGAAGAAAGACTTAATGCTGTAGAAACTTACAAAGATAACATGGACGTTGTTATGCGTGAGGATTTGAAGACCCTCTTTGGGAAGTTTGGCACCGTAAAGTACATTGACTTCAAGATTGGAGAAGAATCGGGATTCGTTCGGTTTGAAGAACCTGAAGCAGCTCACAAAGCACGTGCCGCTGCAGTCCTTACCGAGCTAGGAGGTCTCGTTGTGAAAAATTTCATTGCTACTCTGGAACCTGTTAGTGGCGAGGCCGAGAAAGAGTACTGGAAGAATTTTCGCGGCAGTCAAGAAAAATTCCGCGAAAGCAAGGGCGGCCATCGTGGAAGGGGAGGCAAACACCATAGGGGTGGTTACAAACATGGCCGTTCAAGGGATGATAATAATGGAGGTCGCCCAAACAAACACCGGAAGTTTTGA

Protein Analysis

439

Amino Acids

49.18

Weight (kDa)

5.74

Isoelectric Point (pI)

32.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
La PF05383 13 - 57 9.8e-19 La domain
RRM_1 PF00076 121 - 175 2.2e-09 RNA recognition motif
RRM_3 PF08777 317 - 409 9e-21 RNA binding motif
RRM_1 PF00076 319 - 368 7.4e-07 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011399)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32720 AT4G32720
fragaria_vesca FvH4_2g36050 FvH4_2g36050
malus_domestica MD08G1117800.v1.1 MD15G1097300.v1.1
prunus_persica Prupe.1G452100_v2.0.a1
pyrus_communis pycom08g09840 pycom15g08920
rosa_chinensis RchiOBHm_Chr6g0305801
rosa_laevigata RLG00000010857
rosa_multiflora Rmu_sc0001809.1_g000040 Rmu_sc0041759.1_g000001
rosa_roxburghii Rroxscaffold_7G00162320
rosa_rugosa Rorug06G0344000
rosa_samantha Rh6AG455700 Rh6BG445400 Rh6CG469700 Rh6DG456400
rosa_wichuraiana Rw6G039760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 989
AccI GTMKAC 1 cut(s) 333
AccII CGCG 3 cut(s) 26, 1182, 1203
AciI CCGC 6 cut(s) 24, 359, 1077, 1182, 1201, 1215
AcoI YGGCCR 2 cut(s) 1216, 1264
AcsI RAATTY 5 cut(s) 572, 631, 1117, 1174, 1196
AcuI CTGAAG 8 cut(s) 43, 113, 228, 539, 768, 876, 897, 1074
AcvI CACGTG 1 cut(s) 1073
AcyI GRCGYC 1 cut(s) 504
AfaI GTAC 3 cut(s) 742, 1001, 1166
AfiI CCNNNNNNNGG 4 cut(s) 273, 978, 1145, 1273
AgsI TTSAA 9 cut(s) 190, 307, 392, 492, 636, 967, 1012, 1046, 1272
AjuI GAANNNNNNNTTGG 2 cut(s) 815, 847
AluBI AGCT 9 cut(s) 132, 224, 350, 379, 550, 700, 708, 1061, 1096
AluI AGCT 9 cut(s) 132, 224, 350, 379, 550, 700, 708, 1061, 1096
Alw21I GWGCWC 1 cut(s) 710
Alw26I GTCTC 3 cut(s) 75, 590, 1109
AlwNI CAGNNNCTG 1 cut(s) 350
Ama87I CYCGRG 2 cut(s) 311, 380
AoxI GGCC 4 cut(s) 192, 1152, 1216, 1264
ApeKI GCWGC 5 cut(s) 350, 353, 433, 1058, 1079
ApoI RAATTY 5 cut(s) 572, 631, 1117, 1174, 1196
Asp700I GAANNNNTTC 1 cut(s) 1118
AsuHPI GGTGA 1 cut(s) 851
AvaI CYCGRG 2 cut(s) 311, 380
BanI GGYRCC 1 cut(s) 989
BanII GRGCYC 1 cut(s) 710
BarI GAAGNNNNNNTAC 2 cut(s) 992, 1024
BbrPI CACGTG 1 cut(s) 1073
BbsI GAAGAC 4 cut(s) 276, 507, 620, 974
Bbv12I GWGCWC 1 cut(s) 710
BbvCI CCTCAGC 1 cut(s) 11
BbvI GCAGC 5 cut(s) 337, 340, 420, 1066, 1070
BccI CCATC 4 cut(s) 113, 830, 854, 1227
BceAI ACGGC 1 cut(s) 1251
BcoDI GTCTC 3 cut(s) 75, 590, 1109
BfaI CTAG 3 cut(s) 78, 551, 1097
BfmI CTRYAG 3 cut(s) 294, 918, 1080
BisI GCNGC 8 cut(s) 351, 354, 434, 1059, 1077, 1080, 1183, 1216
BlpI GCTNAGC 1 cut(s) 729
BlsI GCNGC 8 cut(s) 352, 355, 435, 1060, 1078, 1081, 1184, 1217
BmcAI AGTACT 1 cut(s) 1166
BmeT110I CYCGRG 2 cut(s) 311, 380
BmiI GGNNCC 2 cut(s) 991, 1137
BmsI GCATC 1 cut(s) 778
BpiI GAAGAC 4 cut(s) 276, 507, 620, 974
BplI GAGNNNNNCTC 4 cut(s) 156, 188, 421, 453
BpmI CTGGAG 1 cut(s) 789
Bpu10I CCTNAGC 1 cut(s) 11
Bpu1102I GCTNAGC 1 cut(s) 729
BpuEI CTTGAG 2 cut(s) 242, 383
BsaAI YACGTR 1 cut(s) 1073
BsaBI GATNNNNATC 1 cut(s) 69
BsaHI GRCGYC 1 cut(s) 504
BsaI GGTCTC 1 cut(s) 1109
BsaJI CCNNGG 1 cut(s) 312
BsaWI WCCGGW 1 cut(s) 1308
BsaXI ACNNNNNCTCC 2 cut(s) 1092, 1122
Bsc4I CCNNNNNNNGG 4 cut(s) 273, 978, 1145, 1273
Bse1I ACTGG 1 cut(s) 1172
Bse3DI GCAATG 1 cut(s) 1122
Bse8I GATNNNNATC 1 cut(s) 69
BseDI CCNNGG 1 cut(s) 312
BseGI GGATG 7 cut(s) 124, 129, 165, 391, 793, 841, 1282
BseJI GATNNNNATC 1 cut(s) 69
BseLI CCNNNNNNNGG 4 cut(s) 273, 978, 1145, 1273
BseMI GCAATG 1 cut(s) 1122
BseMII CTCAG 4 cut(s) 25, 187, 720, 783
BseNI ACTGG 1 cut(s) 1172
BseRI GAGGAG 1 cut(s) 329
BseXI GCAGC 5 cut(s) 337, 340, 420, 1066, 1070
BsgI GTGCAG 1 cut(s) 339
Bsh1236I CGCG 3 cut(s) 26, 1182, 1203
BshFI GGCC 4 cut(s) 194, 1154, 1218, 1266
BshNI GGYRCC 1 cut(s) 989
BsiHKAI GWGCWC 1 cut(s) 710
BsiHKCI CYCGRG 2 cut(s) 311, 380
BsiSI CCGG 1 cut(s) 1309
BslFI GGGAC 1 cut(s) 484
BslI CCNNNNNNNGG 4 cut(s) 273, 978, 1145, 1273
BsmAI GTCTC 3 cut(s) 75, 590, 1109
BsmBI CGTCTC 2 cut(s) 75, 590
BsmFI GGGAC 1 cut(s) 484
BsnI GGCC 4 cut(s) 194, 1154, 1218, 1266
Bso31I GGTCTC 1 cut(s) 1109
BsoBI CYCGRG 2 cut(s) 311, 380
Bsp1286I GDGCHC 1 cut(s) 710
Bsp1720I GCTNAGC 1 cut(s) 729
BspACI CCGC 6 cut(s) 24, 359, 1077, 1182, 1201, 1215
BspANI GGCC 4 cut(s) 194, 1154, 1218, 1266
BspCNI CTCAG 4 cut(s) 24, 186, 721, 784
BspFNI CGCG 3 cut(s) 26, 1182, 1203
BspLI GGNNCC 2 cut(s) 991, 1137
BspMAI CTGCAG 1 cut(s) 1084
BspT107I GGYRCC 1 cut(s) 989
BspTNI GGTCTC 1 cut(s) 1109
BsrDI GCAATG 1 cut(s) 1122
BsrI ACTGG 1 cut(s) 1172
BssECI CCNNGG 1 cut(s) 312
BssNI GRCGYC 1 cut(s) 504
Bst4CI ACNGT 3 cut(s) 346, 740, 994
BstACI GRCGYC 1 cut(s) 504
BstBAI YACGTR 1 cut(s) 1073
BstDEI CTNAG 5 cut(s) 11, 173, 239, 729, 792
BstF5I GGATG 7 cut(s) 124, 129, 165, 391, 793, 841, 1282
BstFNI CGCG 3 cut(s) 26, 1182, 1203
BstMAI GTCTC 3 cut(s) 75, 590, 1109
BstMWI GCNNNNNNNGC 3 cut(s) 1067, 1076, 1215
BstSFI CTRYAG 3 cut(s) 294, 918, 1080
BstUI CGCG 3 cut(s) 26, 1182, 1203
BstV1I GCAGC 5 cut(s) 337, 340, 420, 1066, 1070
BstV2I GAAGAC 4 cut(s) 276, 507, 620, 974
BstXI CCANNNNNNTGG 1 cut(s) 1250
BsuRI GGCC 4 cut(s) 194, 1154, 1218, 1266
BtsCI GGATG 7 cut(s) 124, 129, 165, 391, 793, 841, 1282
BtsIMutI CAGTG 1 cut(s) 579
CaiI CAGNNNCTG 1 cut(s) 350
CseI GACGC 2 cut(s) 206, 512
Csp6I GTAC 3 cut(s) 741, 1000, 1165
CspCI CAANNNNNGTGG 2 cut(s) 744, 779
CviAII CATG 3 cut(s) 443, 940, 1262
CviQI GTAC 3 cut(s) 741, 1000, 1165
DdeI CTNAG 5 cut(s) 11, 173, 239, 729, 792
EaeI YGGCCR 2 cut(s) 1216, 1264
Ecl136II GAGCTC 1 cut(s) 708
Eco24I GRGCYC 1 cut(s) 710
Eco31I GGTCTC 1 cut(s) 1109
Eco53kI GAGCTC 1 cut(s) 708
Eco57I CTGAAG 8 cut(s) 43, 113, 228, 539, 768, 876, 897, 1074
Eco72I CACGTG 1 cut(s) 1073
Eco88I CYCGRG 2 cut(s) 311, 380
EcoICRI GAGCTC 1 cut(s) 708
EcoT38I GRGCYC 1 cut(s) 710
Esp3I CGTCTC 2 cut(s) 75, 590
FaeI CATG 3 cut(s) 446, 943, 1265
FaiI YATR 9 cut(s) 145, 444, 537, 609, 735, 941, 953, 1245, 1263
FalI AAGNNNNNCTT 4 cut(s) 894, 926, 959, 991
FaqI GGGAC 1 cut(s) 484
FatI CATG 3 cut(s) 442, 939, 1261
FblI GTMKAC 1 cut(s) 333
Fnu4HI GCNGC 8 cut(s) 351, 354, 434, 1059, 1077, 1080, 1183, 1216
FokI GGATG 7 cut(s) 131, 136, 172, 398, 800, 848, 1289
FriOI GRGCYC 1 cut(s) 710
Fsp4HI GCNGC 8 cut(s) 351, 354, 434, 1059, 1077, 1080, 1183, 1216
FspBI CTAG 3 cut(s) 78, 551, 1097
GluI GCNGC 8 cut(s) 351, 354, 434, 1059, 1077, 1080, 1183, 1216
GsuI CTGGAG 1 cut(s) 789
HaeIII GGCC 4 cut(s) 194, 1154, 1218, 1266
HapII CCGG 1 cut(s) 1309
HgaI GACGC 2 cut(s) 206, 512
Hin1I GRCGYC 1 cut(s) 504
Hin1II CATG 3 cut(s) 446, 943, 1265
HincII GTYRAC 2 cut(s) 421, 778
HindII GTYRAC 2 cut(s) 421, 778
HinfI GANTC 5 cut(s) 514, 616, 722, 1025, 1032
HpaI GTTAAC 2 cut(s) 421, 778
HpaII CCGG 1 cut(s) 1309
HphI GGTGA 1 cut(s) 851
Hpy166II GTNNAC 3 cut(s) 334, 421, 778
Hpy188I TCNGA 8 cut(s) 93, 159, 268, 404, 519, 531, 715, 877
Hpy188III TCNNGA 7 cut(s) 259, 304, 746, 1012, 1029, 1133, 1190
Hpy8I GTNNAC 3 cut(s) 334, 421, 778
Hpy99I CGWCG 1 cut(s) 200
HpyAV CCTTC 8 cut(s) 184, 514, 562, 790, 875, 882, 892, 1221
HpyCH4III ACNGT 3 cut(s) 346, 740, 994
HpyCH4IV ACGT 2 cut(s) 945, 1072
HpyCH4V TGCA 4 cut(s) 356, 449, 653, 1082
HpyF10VI GCNNNNNNNGC 3 cut(s) 1067, 1076, 1215
HpyF3I CTNAG 5 cut(s) 11, 173, 239, 729, 792
HpySE526I ACGT 2 cut(s) 945, 1072
Hsp92I GRCGYC 1 cut(s) 504
Hsp92II CATG 3 cut(s) 446, 943, 1265
KspAI GTTAAC 2 cut(s) 421, 778
LpnPI CCDG 9 cut(s) 29, 219, 672, 753, 759, 1065, 1118, 1152, 1153
Lsp1109I GCAGC 5 cut(s) 337, 340, 420, 1066, 1070
LweI GCATC 1 cut(s) 778
MaeI CTAG 3 cut(s) 78, 551, 1097
MaeII ACGT 2 cut(s) 945, 1072
MaeIII GTNAC 1 cut(s) 1253
MhlI GDGCHC 1 cut(s) 710
MluCI AATT 6 cut(s) 407, 572, 631, 1117, 1174, 1196
MlyI GAGTC 1 cut(s) 610
MmeI TCCRAC 1 cut(s) 137
MroXI GAANNNNTTC 1 cut(s) 1118
MseI TTAA 5 cut(s) 219, 420, 696, 777, 912
MslI CAYNNNNRTG 1 cut(s) 1248
MspA1I CMGCKG 1 cut(s) 1079
MspI CCGG 1 cut(s) 1309
MvnI CGCG 3 cut(s) 26, 1182, 1203
MwoI GCNNNNNNNGC 3 cut(s) 1067, 1076, 1215
NlaIII CATG 3 cut(s) 446, 943, 1265
NlaIV GGNNCC 2 cut(s) 991, 1137
NmeAIII GCCGAG 1 cut(s) 1180
PaeR7I CTCGAG 1 cut(s) 380
PdmI GAANNNNTTC 1 cut(s) 1118
PfeI GAWTC 4 cut(s) 514, 722, 1025, 1032
PkrI GCNGC 8 cut(s) 352, 355, 435, 1060, 1078, 1081, 1184, 1217
PleI GAGTC 1 cut(s) 610
PmaCI CACGTG 1 cut(s) 1073
PmlI CACGTG 1 cut(s) 1073
PpsI GAGTC 1 cut(s) 610
Ppu21I YACGTR 1 cut(s) 1073
Psp124BI GAGCTC 1 cut(s) 710
PspCI CACGTG 1 cut(s) 1073
PspN4I GGNNCC 2 cut(s) 991, 1137
PspXI VCTCGAGB 1 cut(s) 380
PstI CTGCAG 1 cut(s) 1084
PstNI CAGNNNCTG 1 cut(s) 350
RsaI GTAC 3 cut(s) 742, 1001, 1166
RsaNI GTAC 3 cut(s) 741, 1000, 1165
RseI CAYNNNNRTG 1 cut(s) 1248
SacI GAGCTC 1 cut(s) 710
SaqAI TTAA 5 cut(s) 219, 420, 696, 777, 912
SatI GCNGC 8 cut(s) 351, 354, 434, 1059, 1077, 1080, 1183, 1216
ScaI AGTACT 1 cut(s) 1166
SchI GAGTC 1 cut(s) 610
SduI GDGCHC 1 cut(s) 710
SfaNI GCATC 1 cut(s) 778
SfcI CTRYAG 3 cut(s) 294, 918, 1080
Sfr274I CTCGAG 1 cut(s) 380
SlaI CTCGAG 1 cut(s) 380
SmiMI CAYNNNNRTG 1 cut(s) 1248
SmlI CTYRAG 3 cut(s) 257, 362, 380
SmoI CTYRAG 3 cut(s) 257, 362, 380
Sse9I AATT 6 cut(s) 407, 572, 631, 1117, 1174, 1196
SsiI CCGC 6 cut(s) 24, 359, 1077, 1182, 1201, 1215
SspMI CTAG 3 cut(s) 78, 551, 1097
SstI GAGCTC 1 cut(s) 710
TaaI ACNGT 3 cut(s) 346, 740, 994
TaiI ACGT 2 cut(s) 948, 1075
TaqI TCGA 4 cut(s) 40, 101, 381, 619
TasI AATT 6 cut(s) 407, 572, 631, 1117, 1174, 1196
TatI WGTACW 2 cut(s) 999, 1164
TauI GCSGC 3 cut(s) 1079, 1185, 1218
TfiI GAWTC 4 cut(s) 514, 722, 1025, 1032
Tru1I TTAA 5 cut(s) 219, 420, 696, 777, 912
Tru9I TTAA 5 cut(s) 219, 420, 696, 777, 912
TscAI CASTG 1 cut(s) 586
TseI GCWGC 5 cut(s) 350, 353, 433, 1058, 1079
TspDTI ATGAA 1 cut(s) 1111
TspGWI ACGGA 2 cut(s) 614, 797
TspRI CASTG 1 cut(s) 586
XapI RAATTY 5 cut(s) 572, 631, 1117, 1174, 1196
XhoI CTCGAG 1 cut(s) 380
XmiI GTMKAC 1 cut(s) 333
XmnI GAANNNNTTC 1 cut(s) 1118
XspI CTAG 3 cut(s) 78, 551, 1097
ZrmI AGTACT 1 cut(s) 1166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.