Rw6G039760

La protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0011399
Physical Location & Seq
Forward (+)
63676840 .. 63679320
2481 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G039760.1

Sequence Viewer

Length: 1251 bp
ATGGCTTCCCTCAGCGAAGAAACCGCGAAGAAAGTTCTTCGACAGGTTGAGTTCTACTTCAGCGATAGCAATCTTCCTAGAGACGATTTTCTGAAGAAGTCGATAAGCGAAAGCGAGGATGGGATGATTAGCTTGGCTTTGATATGCTCGTTTAGCGACGCTATCCCTGAAGATAGCGTTAAAGCTGTTGCTGAAACTCTTAGAAAATCTACCACTCTCAAGATTTCCGAAGACGGGCAAAAGGTTGGTAGGGCTACAGAAATCTTGAAGCCGGAGGAGGTTATTGAGCAAGTAGACATTAGAACAGTAGCTGCTGCACCGCTTGAGTTTGATGTGAAGCTTGAGGATGTTGAAACCTTTTTCGGACAATTTGGCAAGGTTAACAGCGTGAGGCTGCCTCGTCATGTTGCAGATAAAAAGTTGTTCTGTGGGACTGCTTTGGTTGAGTTTTCAACAGAGGAAGACGCCAATAAGATTCTGAAGGAAACTCTGAACTATGGAGGTGTTCAGCTAGAACTAAAACCAAAGAAGGAATTTGACACTGAAAGAGCAAAAGAGACGGAGGAATATGAGAAGACTCGACCCCTCACAAATTCAAATCGCAAGAATAACGCAAAACCAGAGGCAGACTACCCTAAAGGCTTGATTGTTGCATTTAAGCTAAAGAGCTCATCAGATAAAGATTCTGCTGAGCATAACGGTACTCCTGAAGATACAAAAAAGGTGGCAGGAGATGTTAACACGGAGGATGCTGAGAAGGACAATAAGGAAAATGTTGATGAGAAAAATAATGGGGAAAAGCCTTCTGAAGAAGGAAAGGGTGGAGAGAAGGAAGAAAGACTTAATGCTGTAGAAACTTACAAAGATAACATGGACGTTGTTATGCGTGAGGATTTGAAGACCCTCTTTGGGAAGTTTGGCACCGTAAAGTACATTGACTTCAAGATTGGAGAAGAATCGGGATTCGTTCGGTTTGAAGAACCTGAAGCAGCTCACAAAGCACGTGCCGCTGCAGTCCTTACCGAGCTAGGAGGTCTTGTTGTGAAAAATTTCATTGCTACTCTGGAACCAGTTAGTGGTGAGGCCGAGAAAGAGTACTGGAAGAATTTTCGCGGTAGTCAAGAAAAATTCCGCGAAAGCAAGGGTGGCCATCGTGGAAGGGGAGGCAAACACCATAGGGGTGGTTACAAACATGGCCGTTCAAGGGATGATAATGATGGAGGTCGCCCAAACAAACACCGGAAGTTTTGA

Protein Analysis

416

Amino Acids

46.62

Weight (kDa)

5.67

Isoelectric Point (pI)

32.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
La PF05383 13 - 53 2.7e-16 La domain
RRM_1 PF00076 108 - 162 2e-09 RNA recognition motif
RRM_3 PF08777 294 - 386 7.9e-21 RNA binding motif
RRM_1 PF00076 296 - 345 6.9e-07 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011399)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32720 AT4G32720
fragaria_vesca FvH4_2g36050 FvH4_2g36050
malus_domestica MD08G1117800.v1.1 MD15G1097300.v1.1
prunus_persica Prupe.1G452100_v2.0.a1
pyrus_communis pycom08g09840 pycom15g08920
rosa_chinensis RchiOBHm_Chr6g0305801
rosa_laevigata RLG00000010857
rosa_multiflora Rmu_sc0001809.1_g000040 Rmu_sc0041759.1_g000001
rosa_roxburghii Rroxscaffold_7G00162320
rosa_rugosa Rorug06G0344000
rosa_samantha Rh6AG455700 Rh6BG445400 Rh6CG469700 Rh6DG456400
rosa_wichuraiana Rw6G039760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 920
AccB7I CCANNNNNTGG 1 cut(s) 1076
AccI GTMKAC 1 cut(s) 294
AccII CGCG 3 cut(s) 26, 1113, 1134
AciI CCGC 5 cut(s) 24, 320, 1008, 1113, 1132
AcoI YGGCCR 2 cut(s) 1147, 1195
AcsI RAATTY 5 cut(s) 533, 592, 1048, 1105, 1127
AcuI CTGAAG 7 cut(s) 43, 113, 189, 500, 729, 828, 1005
AcvI CACGTG 1 cut(s) 1004
AcyI GRCGYC 1 cut(s) 465
AfaI GTAC 3 cut(s) 703, 932, 1097
AfiI CCNNNNNNNGG 4 cut(s) 234, 909, 1076, 1204
AgsI TTSAA 8 cut(s) 268, 353, 453, 597, 898, 943, 977, 1203
AluBI AGCT 9 cut(s) 132, 185, 311, 340, 511, 661, 669, 992, 1027
AluI AGCT 9 cut(s) 132, 185, 311, 340, 511, 661, 669, 992, 1027
Alw21I GWGCWC 1 cut(s) 671
Alw26I GTCTC 2 cut(s) 75, 551
AlwNI CAGNNNCTG 1 cut(s) 311
AoxI GGCC 3 cut(s) 1083, 1147, 1195
ApeKI GCWGC 5 cut(s) 311, 314, 394, 989, 1010
ApoI RAATTY 5 cut(s) 533, 592, 1048, 1105, 1127
Asp700I GAANNNNTTC 1 cut(s) 1049
AsuHPI GGTGA 1 cut(s) 1091
BalI TGGCCA 1 cut(s) 1149
BanI GGYRCC 1 cut(s) 920
BanII GRGCYC 1 cut(s) 671
BarI GAAGNNNNNNTAC 2 cut(s) 923, 955
BbrPI CACGTG 1 cut(s) 1004
BbsI GAAGAC 4 cut(s) 237, 468, 581, 905
Bbv12I GWGCWC 1 cut(s) 671
BbvCI CCTCAGC 1 cut(s) 11
BbvI GCAGC 5 cut(s) 298, 301, 381, 997, 1001
BccI CCATC 3 cut(s) 113, 1158, 1211
BceAI ACGGC 1 cut(s) 1182
BcoDI GTCTC 2 cut(s) 75, 551
BfaI CTAG 3 cut(s) 78, 512, 1028
BfmI CTRYAG 3 cut(s) 255, 849, 1011
BisI GCNGC 6 cut(s) 312, 315, 395, 990, 1008, 1011
BlpI GCTNAGC 1 cut(s) 690
BlsI GCNGC 6 cut(s) 313, 316, 396, 991, 1009, 1012
BmcAI AGTACT 1 cut(s) 1097
BmiI GGNNCC 2 cut(s) 922, 1068
BmsI GCATC 1 cut(s) 739
BpiI GAAGAC 4 cut(s) 237, 468, 581, 905
BplI GAGNNNNNCTC 2 cut(s) 382, 414
Bpu10I CCTNAGC 1 cut(s) 11
Bpu1102I GCTNAGC 1 cut(s) 690
BpuEI CTTGAG 3 cut(s) 203, 344, 362
BsaAI YACGTR 1 cut(s) 1004
BsaBI GATNNNNATC 1 cut(s) 69
BsaHI GRCGYC 1 cut(s) 465
BsaWI WCCGGW 1 cut(s) 1239
BsaXI ACNNNNNCTCC 2 cut(s) 1023, 1053
Bsc4I CCNNNNNNNGG 4 cut(s) 234, 909, 1076, 1204
Bse1I ACTGG 2 cut(s) 1070, 1103
Bse3DI GCAATG 1 cut(s) 1053
Bse8I GATNNNNATC 1 cut(s) 69
BseGI GGATG 5 cut(s) 124, 129, 352, 754, 1213
BseJI GATNNNNATC 1 cut(s) 69
BseLI CCNNNNNNNGG 4 cut(s) 234, 909, 1076, 1204
BseMI GCAATG 1 cut(s) 1053
BseMII CTCAG 3 cut(s) 25, 681, 744
BseNI ACTGG 2 cut(s) 1070, 1103
BseRI GAGGAG 1 cut(s) 290
BseXI GCAGC 5 cut(s) 298, 301, 381, 997, 1001
BsgI GTGCAG 1 cut(s) 300
Bsh1236I CGCG 3 cut(s) 26, 1113, 1134
BshFI GGCC 3 cut(s) 1085, 1149, 1197
BshNI GGYRCC 1 cut(s) 920
BsiHKAI GWGCWC 1 cut(s) 671
BsiSI CCGG 2 cut(s) 272, 1240
BslFI GGGAC 1 cut(s) 445
BslI CCNNNNNNNGG 4 cut(s) 234, 909, 1076, 1204
BsmAI GTCTC 2 cut(s) 75, 551
BsmBI CGTCTC 2 cut(s) 75, 551
BsmFI GGGAC 1 cut(s) 445
BsnI GGCC 3 cut(s) 1085, 1149, 1197
Bsp1286I GDGCHC 1 cut(s) 671
Bsp1720I GCTNAGC 1 cut(s) 690
BspACI CCGC 5 cut(s) 24, 320, 1008, 1113, 1132
BspANI GGCC 3 cut(s) 1085, 1149, 1197
BspCNI CTCAG 3 cut(s) 24, 682, 745
BspFNI CGCG 3 cut(s) 26, 1113, 1134
BspLI GGNNCC 2 cut(s) 922, 1068
BspMAI CTGCAG 1 cut(s) 1015
BspT107I GGYRCC 1 cut(s) 920
BsrDI GCAATG 1 cut(s) 1053
BsrI ACTGG 2 cut(s) 1070, 1103
BssNI GRCGYC 1 cut(s) 465
Bst4CI ACNGT 3 cut(s) 307, 701, 925
BstACI GRCGYC 1 cut(s) 465
BstBAI YACGTR 1 cut(s) 1004
BstDEI CTNAG 4 cut(s) 11, 200, 690, 753
BstF5I GGATG 5 cut(s) 124, 129, 352, 754, 1213
BstFNI CGCG 3 cut(s) 26, 1113, 1134
BstMAI GTCTC 2 cut(s) 75, 551
BstMWI GCNNNNNNNGC 4 cut(s) 153, 998, 1007, 1146
BstSFI CTRYAG 3 cut(s) 255, 849, 1011
BstUI CGCG 3 cut(s) 26, 1113, 1134
BstV1I GCAGC 5 cut(s) 298, 301, 381, 997, 1001
BstV2I GAAGAC 4 cut(s) 237, 468, 581, 905
BstXI CCANNNNNNTGG 1 cut(s) 1181
BsuRI GGCC 3 cut(s) 1085, 1149, 1197
BtsCI GGATG 5 cut(s) 124, 129, 352, 754, 1213
BtsIMutI CAGTG 1 cut(s) 540
CaiI CAGNNNCTG 1 cut(s) 311
CseI GACGC 2 cut(s) 167, 473
Csp6I GTAC 3 cut(s) 702, 931, 1096
CspCI CAANNNNNGTGG 2 cut(s) 705, 740
CviAII CATG 3 cut(s) 404, 871, 1193
CviQI GTAC 3 cut(s) 702, 931, 1096
DdeI CTNAG 4 cut(s) 11, 200, 690, 753
EaeI YGGCCR 2 cut(s) 1147, 1195
Ecl136II GAGCTC 1 cut(s) 669
Eco24I GRGCYC 1 cut(s) 671
Eco53kI GAGCTC 1 cut(s) 669
Eco57I CTGAAG 7 cut(s) 43, 113, 189, 500, 729, 828, 1005
Eco72I CACGTG 1 cut(s) 1004
EcoICRI GAGCTC 1 cut(s) 669
EcoT38I GRGCYC 1 cut(s) 671
Esp3I CGTCTC 2 cut(s) 75, 551
FaeI CATG 3 cut(s) 407, 874, 1196
FaiI YATR 9 cut(s) 145, 405, 498, 570, 696, 872, 884, 1176, 1194
FalI AAGNNNNNCTT 4 cut(s) 825, 857, 890, 922
FaqI GGGAC 1 cut(s) 445
FatI CATG 3 cut(s) 403, 870, 1192
FblI GTMKAC 1 cut(s) 294
Fnu4HI GCNGC 6 cut(s) 312, 315, 395, 990, 1008, 1011
FokI GGATG 5 cut(s) 131, 136, 359, 761, 1220
FriOI GRGCYC 1 cut(s) 671
Fsp4HI GCNGC 6 cut(s) 312, 315, 395, 990, 1008, 1011
FspBI CTAG 3 cut(s) 78, 512, 1028
GluI GCNGC 6 cut(s) 312, 315, 395, 990, 1008, 1011
HaeIII GGCC 3 cut(s) 1085, 1149, 1197
HapII CCGG 2 cut(s) 272, 1240
HgaI GACGC 2 cut(s) 167, 473
Hin1I GRCGYC 1 cut(s) 465
Hin1II CATG 3 cut(s) 407, 874, 1196
HincII GTYRAC 2 cut(s) 382, 739
HindII GTYRAC 2 cut(s) 382, 739
HindIII AAGCTT 1 cut(s) 338
HinfI GANTC 5 cut(s) 475, 577, 683, 956, 963
HpaI GTTAAC 2 cut(s) 382, 739
HpaII CCGG 2 cut(s) 272, 1240
HphI GGTGA 1 cut(s) 1091
Hpy166II GTNNAC 3 cut(s) 295, 382, 739
Hpy188I TCNGA 7 cut(s) 93, 229, 365, 480, 492, 676, 808
Hpy188III TCNNGA 7 cut(s) 220, 265, 707, 943, 960, 1064, 1121
Hpy8I GTNNAC 3 cut(s) 295, 382, 739
Hpy99I CGWCG 1 cut(s) 161
HpyAV CCTTC 7 cut(s) 475, 523, 751, 806, 813, 823, 1152
HpyCH4III ACNGT 3 cut(s) 307, 701, 925
HpyCH4IV ACGT 2 cut(s) 876, 1003
HpyCH4V TGCA 4 cut(s) 317, 410, 653, 1013
HpyF10VI GCNNNNNNNGC 4 cut(s) 153, 998, 1007, 1146
HpyF3I CTNAG 4 cut(s) 11, 200, 690, 753
HpySE526I ACGT 2 cut(s) 876, 1003
Hsp92I GRCGYC 1 cut(s) 465
Hsp92II CATG 3 cut(s) 407, 874, 1196
KspAI GTTAAC 2 cut(s) 382, 739
Lsp1109I GCAGC 5 cut(s) 298, 301, 381, 997, 1001
LweI GCATC 1 cut(s) 739
MaeI CTAG 3 cut(s) 78, 512, 1028
MaeII ACGT 2 cut(s) 876, 1003
MaeIII GTNAC 1 cut(s) 1184
MhlI GDGCHC 1 cut(s) 671
MlsI TGGCCA 1 cut(s) 1149
MluCI AATT 6 cut(s) 368, 533, 592, 1048, 1105, 1127
MluNI TGGCCA 1 cut(s) 1149
MlyI GAGTC 1 cut(s) 571
Mox20I TGGCCA 1 cut(s) 1149
MroXI GAANNNNTTC 1 cut(s) 1049
MscI TGGCCA 1 cut(s) 1149
MseI TTAA 5 cut(s) 180, 381, 657, 738, 843
MslI CAYNNNNRTG 1 cut(s) 1179
Msp20I TGGCCA 1 cut(s) 1149
MspA1I CMGCKG 1 cut(s) 1010
MspI CCGG 2 cut(s) 272, 1240
MvnI CGCG 3 cut(s) 26, 1113, 1134
MwoI GCNNNNNNNGC 4 cut(s) 153, 998, 1007, 1146
NlaIII CATG 3 cut(s) 407, 874, 1196
NlaIV GGNNCC 2 cut(s) 922, 1068
NmeAIII GCCGAG 1 cut(s) 1111
PdmI GAANNNNTTC 1 cut(s) 1049
PfeI GAWTC 4 cut(s) 475, 683, 956, 963
PflMI CCANNNNNTGG 1 cut(s) 1076
PkrI GCNGC 6 cut(s) 313, 316, 396, 991, 1009, 1012
PleI GAGTC 1 cut(s) 571
PmaCI CACGTG 1 cut(s) 1004
PmlI CACGTG 1 cut(s) 1004
PpsI GAGTC 1 cut(s) 571
Ppu21I YACGTR 1 cut(s) 1004
Psp124BI GAGCTC 1 cut(s) 671
PspCI CACGTG 1 cut(s) 1004
PspN4I GGNNCC 2 cut(s) 922, 1068
PstI CTGCAG 1 cut(s) 1015
PstNI CAGNNNCTG 1 cut(s) 311
RsaI GTAC 3 cut(s) 703, 932, 1097
RsaNI GTAC 3 cut(s) 702, 931, 1096
RseI CAYNNNNRTG 1 cut(s) 1179
SacI GAGCTC 1 cut(s) 671
SaqAI TTAA 5 cut(s) 180, 381, 657, 738, 843
SatI GCNGC 6 cut(s) 312, 315, 395, 990, 1008, 1011
ScaI AGTACT 1 cut(s) 1097
SchI GAGTC 1 cut(s) 571
SduI GDGCHC 1 cut(s) 671
SfaNI GCATC 1 cut(s) 739
SfcI CTRYAG 3 cut(s) 255, 849, 1011
SmiMI CAYNNNNRTG 1 cut(s) 1179
SmlI CTYRAG 3 cut(s) 218, 323, 341
SmoI CTYRAG 3 cut(s) 218, 323, 341
Sse9I AATT 6 cut(s) 368, 533, 592, 1048, 1105, 1127
SsiI CCGC 5 cut(s) 24, 320, 1008, 1113, 1132
SspMI CTAG 3 cut(s) 78, 512, 1028
SstI GAGCTC 1 cut(s) 671
TaaI ACNGT 3 cut(s) 307, 701, 925
TaiI ACGT 2 cut(s) 879, 1006
TaqI TCGA 3 cut(s) 40, 101, 580
TasI AATT 6 cut(s) 368, 533, 592, 1048, 1105, 1127
TatI WGTACW 2 cut(s) 930, 1095
TauI GCSGC 1 cut(s) 1010
TfiI GAWTC 4 cut(s) 475, 683, 956, 963
Tru1I TTAA 5 cut(s) 180, 381, 657, 738, 843
Tru9I TTAA 5 cut(s) 180, 381, 657, 738, 843
TscAI CASTG 1 cut(s) 547
TseI GCWGC 5 cut(s) 311, 314, 394, 989, 1010
TspDTI ATGAA 1 cut(s) 1042
TspGWI ACGGA 2 cut(s) 575, 758
TspRI CASTG 1 cut(s) 547
Van91I CCANNNNNTGG 1 cut(s) 1076
XapI RAATTY 5 cut(s) 533, 592, 1048, 1105, 1127
XmiI GTMKAC 1 cut(s) 294
XmnI GAANNNNTTC 1 cut(s) 1049
XspI CTAG 3 cut(s) 78, 512, 1028
ZrmI AGTACT 1 cut(s) 1097
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.