Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0011399

Physical Location & Seq

Genomic Coordinates Reverse (-)

6775663 .. 6777014

Gene Structure 1352 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1097300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGCGACGCCTTCTTTGGACGAAGAAACCTCGAAGAAAGTGCTGCGCCAGGTCGAGTTTTACTTCAGCGACAGCAATCTTCCGAGGGACGATTTTCTCAGTAAAACGATTAGCGAAAGCGAAGATGGACTGGTAAGCTTGGCTCTGATATGCTCGTTTACACGGATGAGAAATCATCTCAATTTGGGCGATGTGAAGCCCGATACTGTCCCCGAAGCTAGCGTAAAGGCCGTTGCCGAAACGCTTCGACAATCTGCCACTCTAAAGCTTTCGGAAGACGGGACAAAGGTTGGTAGGGCTAATGAAATGCTGAAGCCGGAGGAGGTGATAGAGCAGGTAGACAACAGAACAATAGCTGCTTCGCCATTTGCGTTTGATGTGAAGCTTGAAGATGTCGAAACTTTTTTTAGACAATTTGCCAAGGTTAACAGTGTGAGGCTGCCTCGTCATGTAGCTGACAAAAAGCTACTATGTGGCACTGCTTTGGTTGAGTTTTCAACTGAGGAAGAAGCCAATAAGATTTTGGAGCAACCTTTGGAATCCGCAGGTGTTAAGTTAGAATTGAAGCCGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000049 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0030312 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071944 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko05322 map05322

Pfam Domains

Protein Families

La RRM_1 RRM_3

Protein Analysis

192

Amino Acids

21.3

Weight (kDa)

5.06

Isoelectric Point (pI)

42.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
La	PF05383	15 - 74	1.6e-19	La domain
RRM_1	PF00076	124 - 176	6e-08	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0011399)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32720 AT4G32720
fragaria_vesca	FvH4_2g36050 FvH4_2g36050
malus_domestica	MD08G1117800.v1.1 MD15G1097300.v1.1
prunus_persica	Prupe.1G452100_v2.0.a1
pyrus_communis	pycom08g09840 pycom15g08920
rosa_chinensis	RchiOBHm_Chr6g0305801
rosa_laevigata	RLG00000010857
rosa_multiflora	Rmu_sc0001809.1_g000040 Rmu_sc0041759.1_g000001
rosa_roxburghii	Rroxscaffold_7G00162320
rosa_rugosa	Rorug06G0344000
rosa_samantha	Rh6AG455700 Rh6BG445400 Rh6CG469700 Rh6DG456400
rosa_wichuraiana	Rw6G039760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	536
Acc36I	ACCTGC	2 cut(s)	325, 536
AccI	GTMKAC	1 cut(s)	339
AciI	CCGC	1 cut(s)	543
AcuI	CTGAAG	2 cut(s)	49, 332
AcyI	GRCGYC	1 cut(s)	8
AgsI	TTSAA	3 cut(s)	389, 498, 565
AjnI	CCWGG	1 cut(s)	48
AluBI	AGCT	7 cut(s)	138, 218, 268, 356, 385, 455, 466
AluI	AGCT	7 cut(s)	138, 218, 268, 356, 385, 455, 466
AoxI	GGCC	1 cut(s)	228
ApeKI	GCWGC	3 cut(s)	43, 356, 439
ArsI	GACNNNNNNTTYG	1 cut(s)	30
Asp700I	GAANNNNTTC	1 cut(s)	243
AspLEI	GCGC	1 cut(s)	48
AsuHPI	GGTGA	1 cut(s)	337
AsuNHI	GCTAGC	1 cut(s)	218
BbsI	GAAGAC	1 cut(s)	282
BbvI	GCAGC	3 cut(s)	30, 343, 426
BccI	CCATC	1 cut(s)	119
BceAI	ACGGC	1 cut(s)	215
BcgI	CGANNNNNNTGC	2 cut(s)	22, 56
BciT130I	CCWGG	1 cut(s)	50
BfaI	CTAG	1 cut(s)	219
BfuAI	ACCTGC	2 cut(s)	325, 536
BisI	GCNGC	3 cut(s)	44, 357, 440
BlsI	GCNGC	3 cut(s)	45, 358, 441
Bme1390I	CCNGG	1 cut(s)	50
BmrFI	CCNGG	1 cut(s)	50
BmtI	GCTAGC	1 cut(s)	222
BpiI	GAAGAC	1 cut(s)	282
BplI	GAGNNNNNCTC	2 cut(s)	427, 459
BsaHI	GRCGYC	1 cut(s)	8
BsaJI	CCNNGG	2 cut(s)	83, 420
Bse1I	ACTGG	1 cut(s)	135
BseBI	CCWGG	1 cut(s)	50
BseDI	CCNNGG	2 cut(s)	83, 420
BseGI	GGATG	1 cut(s)	171
BseMII	CTCAG	2 cut(s)	112, 492
BseNI	ACTGG	1 cut(s)	135
BseRI	GAGGAG	1 cut(s)	335
BseXI	GCAGC	3 cut(s)	30, 343, 426
BshFI	GGCC	1 cut(s)	230
BsiSI	CCGG	1 cut(s)	317
BslFI	GGGAC	3 cut(s)	101, 194, 295
BsmFI	GGGAC	3 cut(s)	101, 194, 295
BsnI	GGCC	1 cut(s)	230
BspACI	CCGC	1 cut(s)	543
BspANI	GGCC	1 cut(s)	230
BspCNI	CTCAG	2 cut(s)	111, 493
BspMI	ACCTGC	2 cut(s)	325, 536
BspOI	GCTAGC	1 cut(s)	222
BsrI	ACTGG	1 cut(s)	135
BssECI	CCNNGG	2 cut(s)	83, 420
BssNI	GRCGYC	1 cut(s)	8
BssT1I	CCWWGG	1 cut(s)	420
Bst2UI	CCWGG	1 cut(s)	50
Bst4CI	ACNGT	2 cut(s)	208, 431
BstACI	GRCGYC	1 cut(s)	8
BstC8I	GCNNGC	1 cut(s)	220
BstDEI	CTNAG	2 cut(s)	98, 501
BstF5I	GGATG	1 cut(s)	171
BstHHI	GCGC	1 cut(s)	48
BstNI	CCWGG	1 cut(s)	50
BstSCI	CCNGG	1 cut(s)	48
BstV1I	GCAGC	3 cut(s)	30, 343, 426
BstV2I	GAAGAC	1 cut(s)	282
BsuRI	GGCC	1 cut(s)	230
BtgZI	GCGATG	1 cut(s)	204
BtsCI	GGATG	1 cut(s)	171
BtsI	GCAGTG	1 cut(s)	477
BtsIMutI	CAGTG	2 cut(s)	436, 477
BveI	ACCTGC	2 cut(s)	325, 536
Cac8I	GCNNGC	1 cut(s)	220
CfoI	GCGC	1 cut(s)	48
CseI	GACGC	1 cut(s)	16
CviAII	CATG	1 cut(s)	449
DdeI	CTNAG	2 cut(s)	98, 501
Eco130I	CCWWGG	1 cut(s)	420
Eco57I	CTGAAG	2 cut(s)	49, 332
EcoRII	CCWGG	1 cut(s)	48
EcoT14I	CCWWGG	1 cut(s)	420
ErhI	CCWWGG	1 cut(s)	420
FaeI	CATG	1 cut(s)	452
FaiI	YATR	3 cut(s)	151, 450, 472
FaqI	GGGAC	3 cut(s)	101, 194, 295
FatI	CATG	1 cut(s)	448
FblI	GTMKAC	1 cut(s)	339
Fnu4HI	GCNGC	3 cut(s)	44, 357, 440
FokI	GGATG	1 cut(s)	178
Fsp4HI	GCNGC	3 cut(s)	44, 357, 440
FspBI	CTAG	1 cut(s)	219
GlaI	GCGC	1 cut(s)	47
GluI	GCNGC	3 cut(s)	44, 357, 440
HaeIII	GGCC	1 cut(s)	230
HapII	CCGG	1 cut(s)	317
HgaI	GACGC	1 cut(s)	16
HhaI	GCGC	1 cut(s)	48
Hin1I	GRCGYC	1 cut(s)	8
Hin1II	CATG	1 cut(s)	452
Hin6I	GCGC	1 cut(s)	46
HinP1I	GCGC	1 cut(s)	46
HincII	GTYRAC	1 cut(s)	427
HindII	GTYRAC	1 cut(s)	427
HindIII	AAGCTT	3 cut(s)	136, 266, 383
HinfI	GANTC	1 cut(s)	539
HpaI	GTTAAC	1 cut(s)	427
HpaII	CCGG	1 cut(s)	317
HphI	GGTGA	1 cut(s)	337
Hpy166II	GTNNAC	3 cut(s)	159, 340, 427
Hpy188I	TCNGA	3 cut(s)	84, 147, 274
Hpy8I	GTNNAC	3 cut(s)	159, 340, 427
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	1 cut(s)	21
HpyCH4III	ACNGT	2 cut(s)	208, 431
HpyF3I	CTNAG	2 cut(s)	98, 501
Hsp92I	GRCGYC	1 cut(s)	8
Hsp92II	CATG	1 cut(s)	452
HspAI	GCGC	1 cut(s)	46
KspAI	GTTAAC	1 cut(s)	427
LmnI	GCTCC	1 cut(s)	526
LpnPI	CCDG	6 cut(s)	35, 62, 116, 320, 330, 531
Lsp1109I	GCAGC	3 cut(s)	30, 343, 426
MaeI	CTAG	1 cut(s)	219
MboII	GAAGA	7 cut(s)	35, 46, 71, 134, 287, 401, 518
MluCI	AATT	3 cut(s)	181, 413, 560
MnlI	CCTC	7 cut(s)	40, 78, 313, 316, 429, 453, 496
MroXI	GAANNNNTTC	1 cut(s)	243
MseI	TTAA	2 cut(s)	426, 552
MspI	CCGG	1 cut(s)	317
MspR9I	CCNGG	1 cut(s)	50
MvaI	CCWGG	1 cut(s)	50
NheI	GCTAGC	1 cut(s)	218
NlaIII	CATG	1 cut(s)	452
PaqCI	CACCTGC	1 cut(s)	536
PcsI	WCGNNNNNNNCGW	1 cut(s)	368
PdmI	GAANNNNTTC	1 cut(s)	243
PfeI	GAWTC	1 cut(s)	539
PkrI	GCNGC	3 cut(s)	45, 358, 441
Psp6I	CCWGG	1 cut(s)	48
PspGI	CCWGG	1 cut(s)	48
SaqAI	TTAA	2 cut(s)	426, 552
SatI	GCNGC	3 cut(s)	44, 357, 440
ScrFI	CCNGG	1 cut(s)	50
Sse9I	AATT	3 cut(s)	181, 413, 560
SsiI	CCGC	1 cut(s)	543
SspMI	CTAG	1 cut(s)	219
StyD4I	CCNGG	1 cut(s)	48
StyI	CCWWGG	1 cut(s)	420
TaaI	ACNGT	2 cut(s)	208, 431
TaqI	TCGA	4 cut(s)	32, 54, 247, 396
TasI	AATT	3 cut(s)	181, 413, 560
TfiI	GAWTC	1 cut(s)	539
Tru1I	TTAA	2 cut(s)	426, 552
Tru9I	TTAA	2 cut(s)	426, 552
TscAI	CASTG	2 cut(s)	436, 484
TseI	GCWGC	3 cut(s)	43, 356, 439
TspDTI	ATGAA	1 cut(s)	318
TspGWI	ACGGA	1 cut(s)	178
TspRI	CASTG	2 cut(s)	436, 484
XcmI	CCANNNNNNNNNTGG	1 cut(s)	520
XmiI	GTMKAC	1 cut(s)	339
XmnI	GAANNNNTTC	1 cut(s)	243
XspI	CTAG	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.