La protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G32720 AT4G32720 |
| fragaria_vesca | FvH4_2g36050 FvH4_2g36050 |
| malus_domestica | MD08G1117800.v1.1 MD15G1097300.v1.1 |
| prunus_persica | Prupe.1G452100_v2.0.a1 |
| pyrus_communis | pycom08g09840 pycom15g08920 |
| rosa_chinensis | RchiOBHm_Chr6g0305801 |
| rosa_laevigata | RLG00000010857 |
| rosa_multiflora | Rmu_sc0001809.1_g000040 Rmu_sc0041759.1_g000001 |
| rosa_roxburghii | Rroxscaffold_7G00162320 |
| rosa_rugosa | Rorug06G0344000 |
| rosa_samantha | Rh6AG455700 Rh6BG445400 Rh6CG469700 Rh6DG456400 |
| rosa_wichuraiana | Rw6G039760 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 26 |
| AciI | CCGC | 1 cut(s) | 24 |
| AcuI | CTGAAG | 3 cut(s) | 43, 113, 228 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 273 |
| AgsI | TTSAA | 1 cut(s) | 190 |
| AluBI | AGCT | 2 cut(s) | 132, 224 |
| AluI | AGCT | 2 cut(s) | 132, 224 |
| Alw26I | GTCTC | 1 cut(s) | 75 |
| AoxI | GGCC | 1 cut(s) | 192 |
| BbsI | GAAGAC | 1 cut(s) | 276 |
| BbvCI | CCTCAGC | 1 cut(s) | 11 |
| BccI | CCATC | 1 cut(s) | 113 |
| BcoDI | GTCTC | 1 cut(s) | 75 |
| BfmI | CTRYAG | 1 cut(s) | 294 |
| BpiI | GAAGAC | 1 cut(s) | 276 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 156, 188 |
| Bpu10I | CCTNAGC | 1 cut(s) | 11 |
| BpuEI | CTTGAG | 1 cut(s) | 242 |
| BsaBI | GATNNNNATC | 1 cut(s) | 69 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 273 |
| Bse8I | GATNNNNATC | 1 cut(s) | 69 |
| BseGI | GGATG | 3 cut(s) | 124, 129, 165 |
| BseJI | GATNNNNATC | 1 cut(s) | 69 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 273 |
| BseMII | CTCAG | 2 cut(s) | 25, 187 |
| Bsh1236I | CGCG | 1 cut(s) | 26 |
| BshFI | GGCC | 1 cut(s) | 194 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 273 |
| BsmAI | GTCTC | 1 cut(s) | 75 |
| BsmBI | CGTCTC | 1 cut(s) | 75 |
| BsnI | GGCC | 1 cut(s) | 194 |
| BspACI | CCGC | 1 cut(s) | 24 |
| BspANI | GGCC | 1 cut(s) | 194 |
| BspCNI | CTCAG | 2 cut(s) | 24, 186 |
| BspFNI | CGCG | 1 cut(s) | 26 |
| BstDEI | CTNAG | 3 cut(s) | 11, 173, 239 |
| BstF5I | GGATG | 3 cut(s) | 124, 129, 165 |
| BstFNI | CGCG | 1 cut(s) | 26 |
| BstMAI | GTCTC | 1 cut(s) | 75 |
| BstSFI | CTRYAG | 1 cut(s) | 294 |
| BstUI | CGCG | 1 cut(s) | 26 |
| BstV2I | GAAGAC | 1 cut(s) | 276 |
| BsuRI | GGCC | 1 cut(s) | 194 |
| BtsCI | GGATG | 3 cut(s) | 124, 129, 165 |
| CseI | GACGC | 1 cut(s) | 206 |
| CviJI | RGCY | 6 cut(s) | 5, 132, 137, 194, 224, 293 |
| CviKI_1 | RGCY | 6 cut(s) | 5, 132, 137, 194, 224, 293 |
| DdeI | CTNAG | 3 cut(s) | 11, 173, 239 |
| Eco57I | CTGAAG | 3 cut(s) | 43, 113, 228 |
| Esp3I | CGTCTC | 1 cut(s) | 75 |
| FaiI | YATR | 1 cut(s) | 145 |
| FokI | GGATG | 3 cut(s) | 131, 136, 172 |
| HaeIII | GGCC | 1 cut(s) | 194 |
| HgaI | GACGC | 1 cut(s) | 206 |
| Hpy188I | TCNGA | 4 cut(s) | 78, 93, 159, 268 |
| Hpy188III | TCNNGA | 1 cut(s) | 259 |
| Hpy99I | CGWCG | 1 cut(s) | 200 |
| HpyAV | CCTTC | 1 cut(s) | 184 |
| HpyF3I | CTNAG | 3 cut(s) | 11, 173, 239 |
| LpnPI | CCDG | 2 cut(s) | 29, 219 |
| MboII | GAAGA | 7 cut(s) | 29, 29, 40, 65, 106, 221, 281 |
| MmeI | TCCRAC | 1 cut(s) | 137 |
| MnlI | CCTC | 3 cut(s) | 20, 109, 158 |
| MseI | TTAA | 1 cut(s) | 219 |
| MvnI | CGCG | 1 cut(s) | 26 |
| SaqAI | TTAA | 1 cut(s) | 219 |
| SetI | ASST | 5 cut(s) | 48, 134, 169, 226, 285 |
| SfcI | CTRYAG | 1 cut(s) | 294 |
| SgeI | CNNG | 9 cut(s) | 37, 56, 90, 127, 145, 160, 218, 271, 286 |
| SmlI | CTYRAG | 1 cut(s) | 257 |
| SmoI | CTYRAG | 1 cut(s) | 257 |
| SsiI | CCGC | 1 cut(s) | 24 |
| TaqI | TCGA | 2 cut(s) | 40, 101 |
| Tru1I | TTAA | 1 cut(s) | 219 |
| Tru9I | TTAA | 1 cut(s) | 219 |