Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0011399

Physical Location & Seq

Genomic Coordinates Reverse (-)

10776331 .. 10779328

Gene Structure 2998 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1117800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1380 bp

ATGGCGACGCCTTCTTTGGACGAAGAAACCTCGAAGAAAGTGATCCGCCAGGTCGAGTTTTACTTCAGCGACAGCAATCTTCCGAGGGACGATTTTCTCAGTAAAACGATTGGCGAAAGCGAAGATGGACTGGTTAGCTTGGCTCTGATATGCTCGTTTAGTCGGATGAGAAATCATCTCAGTTTGGGGGATGTGAAGCCGGACAGTGTCCCCGAAGCTACCATAAAGGCCGTTGCCGAAACGCTTCGACTATCTGCCACTCTAAAACTTTCGGAAGACGGGACAAAGGTTGGTAGGGCTAATGAAATGCTGAAGCCGGAGGAGGTGATAGAGCAGGTTGACATAAGAACAGTAGCTGCTTCGCCTTTTGCGTTTGATGTGAAGCTTGAAGATGTCGAAACTTTTTTTAGACAATTTGCCAAGGTTAACAGCGTGAGGCTGCCTCGCCATGTTGCCGACAAAAAGCTACTCTGTGGCACTGCTTTGGTTGAGTTTTCAACTGAGGAAGAAGCCAATAAGATTTTGGAGCAATCTTTGGAATGTGCAGGTGTTAAGTTAGAACTGAAGCCGAAGAGGGATTTTGATGCCGACAGAGAAAGAGAGGTAAAGGAATATGAGGCTCGACCTGTTACAAGTACAAAGGGCAAGAATAACCCGAAAGCTGAAGCTGACTACCCTAAAGGCTTGATTGTTGCATTCACGTTAAAGAGCTTGTCCGGCAAAGGTCCTGCAGTGGTTAGTGGTACGCCTGACAATGCTAATGGTAGTACAAATGGTACTAGTGAAGAAACAGAAAATAAGGCGTCAGAAGATGTTAAAGTAGCTAATGAAGATGTAGAAGTTTCTGGAGAGGATGCTAAGGATAAGGAAAATTCTGATGAGAAAAATAGTTTGGATGAGGTGAAGGAAACTGGAGATGGGGAAAAGTCTTCAGAAGGTTCCGTTCCAAAGGGTGGAGAGAAGGAAGAAAGATTGAATGCTGCCGCATACAAAGATAACATGGATGTTGTTTTGCGTGAGGATTTGAAGGCTGTCTTTGAAAAGTTTGGCACCGTAAAGTACATTGATTTCAAGATTGGAGAAGAATCAGGATACATTCGGTTTGAAGAACCTGAAGCAGCTCAGAAAGCACGTGCAGCTGCAGTCTTTACCGAGCAAGGAGGTCTGGCTGTGAAGAATTTCATCGCTACTTTGGAACCAGTCAGTGGTGAGGCGGAAAAGGAGTACTGGAGCCTCTTCCGTGGCAACCAAGAAAAATTCCGCGATAGTAAGAACCACCGTGGAGGAAGGGGAGGCAAGCACCATCGAGGTGGGTGGAAAGGCCGCTCAAGAGACAATGATAAATCCGGTGGTCGCCCCAGTAAAGTCCGCAAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000049 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0030312 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071944 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko05322 map05322

Pfam Domains

Protein Families

La RRM_1 RRM_3

Protein Analysis

460

Amino Acids

50.63

Weight (kDa)

5.33

Isoelectric Point (pI)

32.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
La	PF05383	14 - 60	6.3e-19	La domain
RRM_1	PF00076	124 - 176	2.2e-07	RNA recognition motif
RRM_3	PF08777	337 - 429	7.7e-21	RNA binding motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011399)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32720 AT4G32720
fragaria_vesca	FvH4_2g36050 FvH4_2g36050
malus_domestica	MD08G1117800.v1.1 MD15G1097300.v1.1
prunus_persica	Prupe.1G452100_v2.0.a1
pyrus_communis	pycom08g09840 pycom15g08920
rosa_chinensis	RchiOBHm_Chr6g0305801
rosa_laevigata	RLG00000010857
rosa_multiflora	Rmu_sc0001809.1_g000040 Rmu_sc0041759.1_g000001
rosa_roxburghii	Rroxscaffold_7G00162320
rosa_rugosa	Rorug06G0344000
rosa_samantha	Rh6AG455700 Rh6BG445400 Rh6CG469700 Rh6DG456400
rosa_wichuraiana	Rw6G039760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	536
Acc36I	ACCTGC	2 cut(s)	325, 536
AccB1I	GGYRCC	1 cut(s)	1049
AccB7I	CCANNNNNTGG	2 cut(s)	953, 1205
AccBSI	CCGCTC	1 cut(s)	1326
AccII	CGCG	1 cut(s)	1263
AciI	CCGC	6 cut(s)	46, 984, 1214, 1261, 1324, 1369
AclWI	GGATC	1 cut(s)	37
AcsI	RAATTY	4 cut(s)	871, 1177, 1256, 1373
AcuI	CTGAAG	6 cut(s)	49, 332, 584, 684, 915, 1134
AcvI	CACGTG	1 cut(s)	1133
AcyI	GRCGYC	2 cut(s)	8, 803
AfaI	GTAC	6 cut(s)	637, 745, 769, 778, 1061, 1226
AfiI	CCNNNNNNNGG	2 cut(s)	953, 1205
AgsI	TTSAA	7 cut(s)	389, 498, 976, 1027, 1040, 1072, 1106
AhlI	ACTAGT	1 cut(s)	779
AjnI	CCWGG	1 cut(s)	48
AjuI	GAANNNNNNNTTGG	2 cut(s)	875, 907
Alw26I	GTCTC	1 cut(s)	1326
AlwI	GGATC	1 cut(s)	37
AlwNI	CAGNNNCTG	1 cut(s)	356
AoxI	GGCC	2 cut(s)	228, 1321
ApeKI	GCWGC	6 cut(s)	356, 439, 980, 1118, 1136, 1139
ApoI	RAATTY	4 cut(s)	871, 1177, 1256, 1373
ArsI	GACNNNNNNTTYG	1 cut(s)	30
Asp700I	GAANNNNTTC	2 cut(s)	243, 1178
AspS9I	GGNCC	1 cut(s)	725
AsuHPI	GGTGA	3 cut(s)	337, 913, 1220
AvaII	GGWCC	1 cut(s)	725
BanI	GGYRCC	1 cut(s)	1049
BbrPI	CACGTG	1 cut(s)	1133
BbsI	GAAGAC	2 cut(s)	282, 921
BbvI	GCAGC	6 cut(s)	343, 426, 967, 1126, 1130, 1148
BccI	CCATC	3 cut(s)	119, 911, 1311
BceAI	ACGGC	1 cut(s)	215
BciT130I	CCWGG	1 cut(s)	50
BciVI	GTATCC	1 cut(s)	1085
BcoDI	GTCTC	1 cut(s)	1326
BcuI	ACTAGT	1 cut(s)	779
BfaI	CTAG	1 cut(s)	780
BfmI	CTRYAG	2 cut(s)	729, 1140
BfuAI	ACCTGC	2 cut(s)	325, 536
BfuI	GTATCC	1 cut(s)	1085
BisI	GCNGC	8 cut(s)	357, 440, 981, 984, 1119, 1137, 1140, 1324
BlsI	GCNGC	8 cut(s)	358, 441, 982, 985, 1120, 1138, 1141, 1325
BmcAI	AGTACT	1 cut(s)	1226
Bme1390I	CCNGG	1 cut(s)	50
Bme18I	GGWCC	1 cut(s)	725
BmgT120I	GGNCC	1 cut(s)	725
BmiI	GGNNCC	4 cut(s)	940, 1051, 1197, 1232
BmrFI	CCNGG	1 cut(s)	50
BmrI	ACTGGG	1 cut(s)	1353
BmsI	GCATC	2 cut(s)	574, 844
BmuI	ACTGGG	1 cut(s)	1353
BpiI	GAAGAC	2 cut(s)	282, 921
BplI	GAGNNNNNCTC	2 cut(s)	427, 459
BpmI	CTGGAG	3 cut(s)	867, 933, 1249
Bpu10I	CCTNAGC	1 cut(s)	858
BpuEI	CTTGAG	1 cut(s)	1312
BsaAI	YACGTR	1 cut(s)	1133
BsaHI	GRCGYC	2 cut(s)	8, 803
BsaJI	CCNNGG	4 cut(s)	83, 420, 1240, 1279
BsaWI	WCCGGW	1 cut(s)	1346
Bsc4I	CCNNNNNNNGG	2 cut(s)	953, 1205
Bse1I	ACTGG	5 cut(s)	135, 916, 1199, 1232, 1359
BseBI	CCWGG	1 cut(s)	50
BseDI	CCNNGG	4 cut(s)	83, 420, 1240, 1279
BseGI	GGATG	5 cut(s)	171, 196, 859, 901, 1009
BseLI	CCNNNNNNNGG	2 cut(s)	953, 1205
BseMII	CTCAG	4 cut(s)	112, 193, 492, 1136
BseNI	ACTGG	5 cut(s)	135, 916, 1199, 1232, 1359
BseRI	GAGGAG	1 cut(s)	335
BseXI	GCAGC	6 cut(s)	343, 426, 967, 1126, 1130, 1148
BsgI	GTGCAG	2 cut(s)	564, 1155
Bsh1236I	CGCG	1 cut(s)	1263
BshFI	GGCC	2 cut(s)	230, 1323
BshNI	GGYRCC	1 cut(s)	1049
BsiSI	CCGG	4 cut(s)	200, 317, 717, 1347
BslFI	GGGAC	3 cut(s)	101, 194, 295
BslI	CCNNNNNNNGG	2 cut(s)	953, 1205
BsmAI	GTCTC	1 cut(s)	1326
BsmFI	GGGAC	3 cut(s)	101, 194, 295
BsmI	GAATGC	2 cut(s)	695, 982
BsnI	GGCC	2 cut(s)	230, 1323
Bsp143I	GATC	1 cut(s)	42
BspACI	CCGC	6 cut(s)	46, 984, 1214, 1261, 1324, 1369
BspANI	GGCC	2 cut(s)	230, 1323
BspCNI	CTCAG	4 cut(s)	111, 192, 493, 1135
BspFNI	CGCG	1 cut(s)	1263
BspLI	GGNNCC	4 cut(s)	940, 1051, 1197, 1232
BspMAI	CTGCAG	2 cut(s)	733, 1144
BspMI	ACCTGC	2 cut(s)	325, 536
BspPI	GGATC	1 cut(s)	37
BspT107I	GGYRCC	1 cut(s)	1049
BsrBI	CCGCTC	1 cut(s)	1326
BsrI	ACTGG	5 cut(s)	135, 916, 1199, 1232, 1359
BssECI	CCNNGG	4 cut(s)	83, 420, 1240, 1279
BssMI	GATC	1 cut(s)	42
BssNI	GRCGYC	2 cut(s)	8, 803
BssT1I	CCWWGG	1 cut(s)	420
Bst2UI	CCWGG	1 cut(s)	50
Bst4CI	ACNGT	4 cut(s)	206, 352, 1054, 1280
Bst6I	CTCTTC	2 cut(s)	566, 1241
BstACI	GRCGYC	2 cut(s)	8, 803
BstBAI	YACGTR	1 cut(s)	1133
BstC8I	GCNNGC	1 cut(s)	1298
BstDEI	CTNAG	5 cut(s)	98, 179, 501, 858, 1122
BstDSI	CCRYGG	2 cut(s)	1240, 1279
BstF5I	GGATG	5 cut(s)	171, 196, 859, 901, 1009
BstFNI	CGCG	1 cut(s)	1263
BstKTI	GATC	1 cut(s)	45
BstMAI	GTCTC	1 cut(s)	1326
BstMBI	GATC	1 cut(s)	42
BstMWI	GCNNNNNNNGC	3 cut(s)	717, 1127, 1136
BstNI	CCWGG	1 cut(s)	50
BstSCI	CCNGG	1 cut(s)	48
BstSFI	CTRYAG	2 cut(s)	729, 1140
BstUI	CGCG	1 cut(s)	1263
BstV1I	GCAGC	6 cut(s)	343, 426, 967, 1126, 1130, 1148
BstV2I	GAAGAC	2 cut(s)	282, 921
BstXI	CCANNNNNNTGG	1 cut(s)	1310
BsuI	GTATCC	1 cut(s)	1085
BsuRI	GGCC	2 cut(s)	230, 1323
BtgI	CCRYGG	2 cut(s)	1240, 1279
BtgZI	GCGATG	1 cut(s)	1168
BtsCI	GGATG	5 cut(s)	171, 196, 859, 901, 1009
BtsI	GCAGTG	2 cut(s)	477, 738
BtsIMutI	CAGTG	4 cut(s)	211, 477, 738, 1210
BveI	ACCTGC	2 cut(s)	325, 536
Cac8I	GCNNGC	1 cut(s)	1298
CaiI	CAGNNNCTG	1 cut(s)	356
Cfr13I	GGNCC	1 cut(s)	725
CseI	GACGC	2 cut(s)	16, 792
Csp6I	GTAC	6 cut(s)	636, 744, 768, 777, 1060, 1225
CviAII	CATG	2 cut(s)	449, 1000
CviQI	GTAC	6 cut(s)	636, 744, 768, 777, 1060, 1225
DdeI	CTNAG	5 cut(s)	98, 179, 501, 858, 1122
DpnI	GATC	1 cut(s)	44
DpnII	GATC	1 cut(s)	42
Eam1104I	CTCTTC	2 cut(s)	566, 1241
EarI	CTCTTC	2 cut(s)	566, 1241
EciI	GGCGGA	2 cut(s)	35, 1229
Eco130I	CCWWGG	1 cut(s)	420
Eco47I	GGWCC	1 cut(s)	725
Eco57I	CTGAAG	6 cut(s)	49, 332, 584, 684, 915, 1134
Eco72I	CACGTG	1 cut(s)	1133
EcoO109I	RGGNCCY	1 cut(s)	725
EcoRII	CCWGG	1 cut(s)	48
EcoT14I	CCWWGG	1 cut(s)	420
ErhI	CCWWGG	1 cut(s)	420
FaeI	CATG	2 cut(s)	452, 1003
FaiI	YATR	7 cut(s)	151, 224, 344, 450, 615, 988, 1001
FalI	AAGNNNNNCTT	2 cut(s)	1019, 1051
FaqI	GGGAC	3 cut(s)	101, 194, 295
FatI	CATG	2 cut(s)	448, 999
Fnu4HI	GCNGC	8 cut(s)	357, 440, 981, 984, 1119, 1137, 1140, 1324
FokI	GGATG	5 cut(s)	178, 203, 866, 908, 1016
Fsp4HI	GCNGC	8 cut(s)	357, 440, 981, 984, 1119, 1137, 1140, 1324
FspBI	CTAG	1 cut(s)	780
GluI	GCNGC	8 cut(s)	357, 440, 981, 984, 1119, 1137, 1140, 1324
GsuI	CTGGAG	3 cut(s)	867, 933, 1249
HaeIII	GGCC	2 cut(s)	230, 1323
HapII	CCGG	4 cut(s)	200, 317, 717, 1347
HgaI	GACGC	2 cut(s)	16, 792
Hin1I	GRCGYC	2 cut(s)	8, 803
Hin1II	CATG	2 cut(s)	452, 1003
HincII	GTYRAC	2 cut(s)	340, 427
HindII	GTYRAC	2 cut(s)	340, 427
HindIII	AAGCTT	1 cut(s)	383
HinfI	GANTC	1 cut(s)	1085
HpaI	GTTAAC	1 cut(s)	427
HpaII	CCGG	4 cut(s)	200, 317, 717, 1347
HphI	GGTGA	3 cut(s)	337, 913, 1220
Hpy166II	GTNNAC	2 cut(s)	340, 427
Hpy188I	TCNGA	8 cut(s)	84, 147, 165, 274, 808, 877, 934, 1125
Hpy188III	TCNNGA	4 cut(s)	846, 1072, 1089, 1329
Hpy8I	GTNNAC	2 cut(s)	340, 427
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	6 cut(s)	21, 898, 929, 955, 1021, 1281
HpyCH4III	ACNGT	4 cut(s)	206, 352, 1054, 1280
HpyCH4IV	ACGT	2 cut(s)	701, 1132
HpyCH4V	TGCA	5 cut(s)	545, 695, 731, 1136, 1142
HpyF10VI	GCNNNNNNNGC	3 cut(s)	717, 1127, 1136
HpyF3I	CTNAG	5 cut(s)	98, 179, 501, 858, 1122
HpySE526I	ACGT	2 cut(s)	701, 1132
Hsp92I	GRCGYC	2 cut(s)	8, 803
Hsp92II	CATG	2 cut(s)	452, 1003
KspAI	GTTAAC	1 cut(s)	427
Kzo9I	GATC	1 cut(s)	42
LmnI	GCTCC	2 cut(s)	526, 1230
Lsp1109I	GCAGC	6 cut(s)	343, 426, 967, 1126, 1130, 1148
LweI	GCATC	2 cut(s)	574, 844
MaeI	CTAG	1 cut(s)	780
MaeII	ACGT	2 cut(s)	701, 1132
MaeIII	GTNAC	1 cut(s)	628
MalI	GATC	1 cut(s)	44
MbiI	CCGCTC	1 cut(s)	1326
MboI	GATC	1 cut(s)	42
MluCI	AATT	5 cut(s)	413, 871, 1177, 1256, 1373
MmeI	TCCRAC	1 cut(s)	143
MroXI	GAANNNNTTC	2 cut(s)	243, 1178
MseI	TTAA	4 cut(s)	426, 552, 704, 816
MslI	CAYNNNNRTG	1 cut(s)	1308
MspA1I	CMGCKG	1 cut(s)	1139
MspI	CCGG	4 cut(s)	200, 317, 717, 1347
MspR9I	CCNGG	1 cut(s)	50
Mva1269I	GAATGC	2 cut(s)	695, 982
MvaI	CCWGG	1 cut(s)	50
MvnI	CGCG	1 cut(s)	1263
MwoI	GCNNNNNNNGC	3 cut(s)	717, 1127, 1136
NdeII	GATC	1 cut(s)	42
NlaIII	CATG	2 cut(s)	452, 1003
NlaIV	GGNNCC	4 cut(s)	940, 1051, 1197, 1232
PaqCI	CACCTGC	1 cut(s)	536
PcsI	WCGNNNNNNNCGW	1 cut(s)	368
PctI	GAATGC	2 cut(s)	695, 982
PdmI	GAANNNNTTC	2 cut(s)	243, 1178
PfeI	GAWTC	1 cut(s)	1085
PflFI	GACNNNGTC	1 cut(s)	206
PflMI	CCANNNNNTGG	2 cut(s)	953, 1205
PkrI	GCNGC	8 cut(s)	358, 441, 982, 985, 1120, 1138, 1141, 1325
PmaCI	CACGTG	1 cut(s)	1133
PmlI	CACGTG	1 cut(s)	1133
Ppu21I	YACGTR	1 cut(s)	1133
PpuMI	RGGWCCY	1 cut(s)	725
Psp5II	RGGWCCY	1 cut(s)	725
Psp6I	CCWGG	1 cut(s)	48
PspCI	CACGTG	1 cut(s)	1133
PspGI	CCWGG	1 cut(s)	48
PspN4I	GGNNCC	4 cut(s)	940, 1051, 1197, 1232
PspPI	GGNCC	1 cut(s)	725
PspPPI	RGGWCCY	1 cut(s)	725
PstI	CTGCAG	2 cut(s)	733, 1144
PstNI	CAGNNNCTG	1 cut(s)	356
PsyI	GACNNNGTC	1 cut(s)	206
PvuII	CAGCTG	1 cut(s)	1139
RsaI	GTAC	6 cut(s)	637, 745, 769, 778, 1061, 1226
RsaNI	GTAC	6 cut(s)	636, 744, 768, 777, 1060, 1225
RseI	CAYNNNNRTG	1 cut(s)	1308
SaqAI	TTAA	4 cut(s)	426, 552, 704, 816
SatI	GCNGC	8 cut(s)	357, 440, 981, 984, 1119, 1137, 1140, 1324
Sau3AI	GATC	1 cut(s)	42
Sau96I	GGNCC	1 cut(s)	725
ScaI	AGTACT	1 cut(s)	1226
ScrFI	CCNGG	1 cut(s)	50
SfaNI	GCATC	2 cut(s)	574, 844
SfcI	CTRYAG	2 cut(s)	729, 1140
SinI	GGWCC	1 cut(s)	725
SmiMI	CAYNNNNRTG	1 cut(s)	1308
SmlI	CTYRAG	1 cut(s)	1327
SmoI	CTYRAG	1 cut(s)	1327
SpeI	ACTAGT	1 cut(s)	779
Sse9I	AATT	5 cut(s)	413, 871, 1177, 1256, 1373
SsiI	CCGC	6 cut(s)	46, 984, 1214, 1261, 1324, 1369
SspMI	CTAG	1 cut(s)	780
StyD4I	CCNGG	1 cut(s)	48
StyI	CCWWGG	1 cut(s)	420
TaaI	ACNGT	4 cut(s)	206, 352, 1054, 1280
TaiI	ACGT	2 cut(s)	704, 1135
TaqI	TCGA	6 cut(s)	32, 54, 247, 396, 622, 1306
TasI	AATT	5 cut(s)	413, 871, 1177, 1256, 1373
TatI	WGTACW	4 cut(s)	635, 767, 1059, 1224
TauI	GCSGC	2 cut(s)	986, 1326
TfiI	GAWTC	1 cut(s)	1085
Tru1I	TTAA	4 cut(s)	426, 552, 704, 816
Tru9I	TTAA	4 cut(s)	426, 552, 704, 816
TscAI	CASTG	4 cut(s)	211, 484, 738, 1210
TseI	GCWGC	6 cut(s)	356, 439, 980, 1118, 1136, 1139
TspDTI	ATGAA	3 cut(s)	318, 843, 1171
TspGWI	ACGGA	2 cut(s)	931, 1229
TspRI	CASTG	4 cut(s)	211, 484, 738, 1210
Tth111I	GACNNNGTC	1 cut(s)	206
Van91I	CCANNNNNTGG	2 cut(s)	953, 1205
VpaK11BI	GGWCC	1 cut(s)	725
XapI	RAATTY	4 cut(s)	871, 1177, 1256, 1373
XcmI	CCANNNNNNNNNTGG	1 cut(s)	520
XmnI	GAANNNNTTC	2 cut(s)	243, 1178
XspI	CTAG	1 cut(s)	780
ZrmI	AGTACT	1 cut(s)	1226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.