Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009357

Physical Location & Seq

Genomic Coordinates Reverse (-)

16110712 .. 16112604

Gene Structure 1893 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G33495.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGAAGCTTTTTCTTAGAAATGCTTTTAAAACCTTAAACCCTAAGAGAAAACTAGCGACGACGATTCTTCCTTCAATCAATTTAATTCTCGTTAAACCCTTCTCTCAATCCACCACCATTCCCAAAAAACAGGATCGAGTTCGTGACCATGGCTACGACAATTACATGGAAGTGGAGAAAAAAATCCGCAAAGTCGTCAAATTTCACAGCTTGATTCTCTCTCAACCCAACCACACAATCGCAATCTCTCTTCTAGACACGCTCGCTCGTCGTCTAGGTCTCGGCTTCAAGCAACACGAACCAGGTGCTTTTCTCCTCAAGTTCCCACACGTGTTTGAGATATACGAGCACCCAGTTCAAAGAATCCTCTATTGTCGATTAACCCGTAAAGCTTTGGATCAAATCCGTCACGAACACGAAGCTGTTCTCGACCAAATACCCGACGCCGTGACCCGGTTGAGGAAACTCGTTATGATGTCGAATACGGGTCGGATCCGTCTTGAACATGTCAGGATTGCTCGGACTGAGTTTGGACTCCCTGAAGATTTCGAGTACTCTGTGATTCTGAAACATCCACAGTTCTTTAGACTCATTGATGGTGAAGAGACTCGAGATAAGTACATTGAGATTGTGGAAAAGGATCCTAATTTATCGATTTGTGCAATAGAGAGAGTTAGAGAGATTGAGTATAGAACAAAAGGAATTGATGCAGAGGATGTTCGATTCTCATTCGTTGTGAATTTTCCTCCTGGATTTAAGATTGGAAAGTATTTTCGAATTGCTGTTTGGAAATGGCAGAGGCTTCCTTATTGGTCACCGTATGAGGATATATCGGGTTACGATTTGAGATCGATGGAAGCGCAGAATCGATTAGAGAAGAGATCTGTTGCTTGTATTCATGAATTGCTGTCTTTGACTGTGGAGAAGAAGATCACGCTTGAGAGAATTGCTCATTTTAGGAATGTGATGAATTTGCCTAAGAAATTGAAAGAGTTTCTTTTGCAACATCAGGGGATATTTTACATATCGACTCGAGGAAATTACGGGAAGCTTCATACGGTGTTTCTTAGAGAGGGGTATAAGAGAGGGGAATTGGTAGAACCGAATGATGTTTATTTAGCTAGGAGGAGATTAGCTGAGCTTGTTTTGATGAGTCCTAGAAAGGCTAAGGTTGATGCAGAGTTGGTTCGCTACAGAGATGGATTGGATGATGAAGATGATGTCGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007275 GO:0008150 GO:0008285 GO:0009653 GO:0009791 GO:0010015 GO:0010101 GO:0010102 GO:0022622 GO:0032501 GO:0032502 GO:0042127 GO:0048364 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0065007 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PORR

Protein Analysis

409

Amino Acids

48.29

Weight (kDa)

9.55

Isoelectric Point (pI)

37.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PORR	PF11955	47 - 386	1.2e-111	Plant organelle RNA recognition domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009357)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33495
fragaria_vesca	FvH4_3g19980 FvH4_3g19980 FvH4_3g19980 FvH4_3g19980 FvH4_3g19980 FvH4_3g19980
malus_domestica	MD01G1198200.v1.1 MD07G1266100.v1.1
prunus_persica	Prupe.2G291500_v2.0.a1
pyrus_communis	pycom01g20830
rosa_chinensis	RchiOBHm_Chr5g0033651
rosa_laevigata	RLG00000033496
rosa_multiflora	Rmu_co8282813.1_g000001 Rmu_sc0001768.1_g000027
rosa_roxburghii	Rroxscaffold_1G00046440
rosa_rugosa	Rorug05G0141500
rosa_samantha	Rh5AG232600 Rh5BG233200 Rh5CG262100 Rh5DG238900
rosa_wichuraiana	Rw5G021610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	187
AclWI	GGATC	6 cut(s)	141, 405, 487, 500, 635, 648
AcsI	RAATTY	3 cut(s)	200, 739, 970
AcuI	CTGAAG	1 cut(s)	561
AcvI	CACGTG	1 cut(s)	331
AcyI	GRCGYC	1 cut(s)	444
AfaI	GTAC	2 cut(s)	554, 620
AfiI	CCNNNNNNNGG	2 cut(s)	453, 459
AflIII	ACRYGT	3 cut(s)	328, 330, 505
AgsI	TTSAA	5 cut(s)	75, 289, 359, 503, 988
AjnI	CCWGG	2 cut(s)	301, 748
AjuI	GAANNNNNNNTTGG	2 cut(s)	769, 801
AluBI	AGCT	8 cut(s)	7, 210, 392, 422, 1051, 1121, 1136, 1141
AluI	AGCT	8 cut(s)	7, 210, 392, 422, 1051, 1121, 1136, 1141
Alw21I	GWGCWC	1 cut(s)	351
Alw26I	GTCTC	2 cut(s)	284, 599
AlwI	GGATC	6 cut(s)	141, 405, 487, 500, 635, 648
Ama87I	CYCGRG	2 cut(s)	609, 1032
ApoI	RAATTY	3 cut(s)	200, 739, 970
Asp700I	GAANNNNTTC	1 cut(s)	423
AspLEI	GCGC	1 cut(s)	862
AsuC2I	CCSGG	1 cut(s)	454
AsuHPI	GGTGA	2 cut(s)	611, 807
AsuII	TTCGAA	1 cut(s)	775
AvaI	CYCGRG	2 cut(s)	609, 1032
BamHI	GGATCC	2 cut(s)	492, 640
BbrPI	CACGTG	1 cut(s)	331
Bbv12I	GWGCWC	1 cut(s)	351
BccI	CCATC	3 cut(s)	590, 847, 1193
BceAI	ACGGC	1 cut(s)	431
BcgI	CGANNNNNNTGC	2 cut(s)	287, 321
BciT130I	CCWGG	2 cut(s)	303, 750
BcnI	CCSGG	1 cut(s)	454
BcoDI	GTCTC	2 cut(s)	284, 599
BfaI	CTAG	5 cut(s)	53, 254, 275, 1122, 1158
BfmI	CTRYAG	1 cut(s)	1192
BglII	AGATCT	1 cut(s)	881
BlpI	GCTNAGC	1 cut(s)	1137
BmcAI	AGTACT	1 cut(s)	554
Bme1390I	CCNGG	3 cut(s)	303, 454, 750
BmeT110I	CYCGRG	2 cut(s)	609, 1032
BmiI	GGNNCC	2 cut(s)	494, 642
BmrFI	CCNGG	3 cut(s)	303, 454, 750
BmrI	ACTGGG	1 cut(s)	347
BmsI	GCATC	2 cut(s)	697, 1165
BmuI	ACTGGG	1 cut(s)	347
BplI	GAGNNNNNCTC	2 cut(s)	934, 966
Bpu10I	CCTNAGC	1 cut(s)	1167
Bpu1102I	GCTNAGC	1 cut(s)	1137
Bpu14I	TTCGAA	1 cut(s)	775
BpuEI	CTTGAG	2 cut(s)	302, 959
BpuMI	CCSGG	1 cut(s)	454
Bsa29I	ATCGAT	3 cut(s)	653, 851, 868
BsaAI	YACGTR	1 cut(s)	331
BsaHI	GRCGYC	1 cut(s)	444
BsaI	GGTCTC	1 cut(s)	284
BsaJI	CCNNGG	1 cut(s)	148
Bsc4I	CCNNNNNNNGG	2 cut(s)	453, 459
Bse1I	ACTGG	1 cut(s)	353
BseBI	CCWGG	2 cut(s)	303, 750
BseCI	ATCGAT	3 cut(s)	653, 851, 868
BseDI	CCNNGG	1 cut(s)	148
BseGI	GGATG	3 cut(s)	571, 721, 1213
BseLI	CCNNNNNNNGG	2 cut(s)	453, 459
BseMII	CTCAG	2 cut(s)	516, 1128
BseNI	ACTGG	1 cut(s)	353
BseRI	GAGGAG	2 cut(s)	305, 1141
BshVI	ATCGAT	3 cut(s)	653, 851, 868
BsiHKAI	GWGCWC	1 cut(s)	351
BsiHKCI	CYCGRG	2 cut(s)	609, 1032
BsiSI	CCGG	1 cut(s)	454
BslI	CCNNNNNNNGG	2 cut(s)	453, 459
BsmAI	GTCTC	2 cut(s)	284, 599
Bso31I	GGTCTC	1 cut(s)	284
BsoBI	CYCGRG	2 cut(s)	609, 1032
Bsp119I	TTCGAA	1 cut(s)	775
Bsp1286I	GDGCHC	1 cut(s)	351
Bsp143I	GATC	7 cut(s)	133, 397, 492, 640, 848, 881, 930
Bsp1720I	GCTNAGC	1 cut(s)	1137
Bsp19I	CCATGG	1 cut(s)	148
BspACI	CCGC	1 cut(s)	187
BspCNI	CTCAG	2 cut(s)	517, 1129
BspDI	ATCGAT	3 cut(s)	653, 851, 868
BspHI	TCATGA	1 cut(s)	898
BspLI	GGNNCC	2 cut(s)	494, 642
BspPI	GGATC	6 cut(s)	141, 405, 487, 500, 635, 648
BspT104I	TTCGAA	1 cut(s)	775
BspTNI	GGTCTC	1 cut(s)	284
BsrI	ACTGG	1 cut(s)	353
BssECI	CCNNGG	1 cut(s)	148
BssMI	GATC	7 cut(s)	133, 397, 492, 640, 848, 881, 930
BssNI	GRCGYC	1 cut(s)	444
BssT1I	CCWWGG	1 cut(s)	148
Bst2UI	CCWGG	2 cut(s)	303, 750
Bst4CI	ACNGT	4 cut(s)	579, 819, 919, 1060
Bst6I	CTCTTC	3 cut(s)	255, 597, 872
BstACI	GRCGYC	1 cut(s)	444
BstBAI	YACGTR	1 cut(s)	331
BstBI	TTCGAA	1 cut(s)	775
BstC8I	GCNNGC	1 cut(s)	264
BstDEI	CTNAG	7 cut(s)	14, 42, 525, 978, 1067, 1137, 1167
BstDSI	CCRYGG	1 cut(s)	148
BstEII	GGTNACC	1 cut(s)	813
BstF5I	GGATG	3 cut(s)	571, 721, 1213
BstHHI	GCGC	1 cut(s)	862
BstKTI	GATC	7 cut(s)	136, 400, 495, 643, 851, 884, 933
BstMAI	GTCTC	2 cut(s)	284, 599
BstMBI	GATC	7 cut(s)	133, 397, 492, 640, 848, 881, 930
BstNI	CCWGG	2 cut(s)	303, 750
BstNSI	RCATGY	1 cut(s)	509
BstPI	GGTNACC	1 cut(s)	813
BstSCI	CCNGG	3 cut(s)	301, 452, 748
BstSFI	CTRYAG	1 cut(s)	1192
BstX2I	RGATCY	3 cut(s)	492, 640, 881
BstYI	RGATCY	3 cut(s)	492, 640, 881
Bsu15I	ATCGAT	3 cut(s)	653, 851, 868
BsuTUI	ATCGAT	3 cut(s)	653, 851, 868
BtgI	CCRYGG	1 cut(s)	148
BtsCI	GGATG	3 cut(s)	571, 721, 1213
Cac8I	GCNNGC	1 cut(s)	264
CciI	TCATGA	1 cut(s)	898
CfoI	GCGC	1 cut(s)	862
ClaI	ATCGAT	3 cut(s)	653, 851, 868
CseI	GACGC	1 cut(s)	452
CsiI	ACCWGGT	1 cut(s)	301
Csp6I	GTAC	2 cut(s)	553, 619
CviAII	CATG	4 cut(s)	149, 166, 506, 899
CviQI	GTAC	2 cut(s)	553, 619
DdeI	CTNAG	7 cut(s)	14, 42, 525, 978, 1067, 1137, 1167
DpnI	GATC	7 cut(s)	135, 399, 494, 642, 850, 883, 932
DpnII	GATC	7 cut(s)	133, 397, 492, 640, 848, 881, 930
DraI	TTTAAA	1 cut(s)	28
Eam1104I	CTCTTC	3 cut(s)	255, 597, 872
EarI	CTCTTC	3 cut(s)	255, 597, 872
Eco130I	CCWWGG	1 cut(s)	148
Eco31I	GGTCTC	1 cut(s)	284
Eco57I	CTGAAG	1 cut(s)	561
Eco72I	CACGTG	1 cut(s)	331
Eco88I	CYCGRG	2 cut(s)	609, 1032
Eco91I	GGTNACC	1 cut(s)	813
EcoO65I	GGTNACC	1 cut(s)	813
EcoRII	CCWGG	2 cut(s)	301, 748
EcoT14I	CCWWGG	1 cut(s)	148
ErhI	CCWWGG	1 cut(s)	148
FaeI	CATG	4 cut(s)	152, 169, 509, 902
FalI	AAGNNNNNCTT	2 cut(s)	981, 1013
FatI	CATG	4 cut(s)	148, 165, 505, 898
FokI	GGATG	3 cut(s)	558, 728, 1220
FspBI	CTAG	5 cut(s)	53, 254, 275, 1122, 1158
GlaI	GCGC	1 cut(s)	861
HapII	CCGG	1 cut(s)	454
HgaI	GACGC	1 cut(s)	452
HhaI	GCGC	1 cut(s)	862
Hin1I	GRCGYC	1 cut(s)	444
Hin1II	CATG	4 cut(s)	152, 169, 509, 902
Hin6I	GCGC	1 cut(s)	860
HinP1I	GCGC	1 cut(s)	860
HindIII	AAGCTT	3 cut(s)	5, 390, 1049
HpaII	CCGG	1 cut(s)	454
HphI	GGTGA	2 cut(s)	611, 807
Hpy188I	TCNGA	3 cut(s)	492, 522, 567
Hpy188III	TCNNGA	8 cut(s)	143, 254, 410, 428, 500, 511, 611, 899
Hpy99I	CGWCG	4 cut(s)	61, 64, 273, 446
HpyAV	CCTTC	2 cut(s)	81, 109
HpyCH4III	ACNGT	4 cut(s)	579, 819, 919, 1060
HpyCH4IV	ACGT	1 cut(s)	330
HpyCH4V	TGCA	4 cut(s)	662, 710, 1003, 1178
HpyF3I	CTNAG	7 cut(s)	14, 42, 525, 978, 1067, 1137, 1167
HpySE526I	ACGT	1 cut(s)	330
Hsp92I	GRCGYC	1 cut(s)	444
Hsp92II	CATG	4 cut(s)	152, 169, 509, 902
HspAI	GCGC	1 cut(s)	860
Kzo9I	GATC	7 cut(s)	133, 397, 492, 640, 848, 881, 930
LweI	GCATC	2 cut(s)	697, 1165
MabI	ACCWGGT	1 cut(s)	301
MaeI	CTAG	5 cut(s)	53, 254, 275, 1122, 1158
MaeII	ACGT	1 cut(s)	330
MaeIII	GTNAC	5 cut(s)	143, 407, 448, 813, 836
MalI	GATC	7 cut(s)	135, 399, 494, 642, 850, 883, 932
MboI	GATC	7 cut(s)	133, 397, 492, 640, 848, 881, 930
MboII	GAAGA	8 cut(s)	59, 242, 554, 614, 889, 937, 940, 1226
MflI	RGATCY	3 cut(s)	492, 640, 881
MhlI	GDGCHC	1 cut(s)	351
MlyI	GAGTC	5 cut(s)	528, 582, 601, 1024, 1162
MmeI	TCCRAC	1 cut(s)	470
MroXI	GAANNNNTTC	1 cut(s)	423
MseI	TTAA	6 cut(s)	27, 35, 83, 93, 380, 756
MslI	CAYNNNNRTG	1 cut(s)	170
MspI	CCGG	1 cut(s)	454
MspR9I	CCNGG	3 cut(s)	303, 454, 750
MvaI	CCWGG	2 cut(s)	303, 750
NciI	CCSGG	1 cut(s)	454
NcoI	CCATGG	1 cut(s)	148
NdeII	GATC	7 cut(s)	133, 397, 492, 640, 848, 881, 930
NlaIII	CATG	4 cut(s)	152, 169, 509, 902
NlaIV	GGNNCC	2 cut(s)	494, 642
NmeAIII	GCCGAG	1 cut(s)	261
NmuCI	GTSAC	4 cut(s)	143, 407, 448, 813
NspI	RCATGY	1 cut(s)	509
NspV	TTCGAA	1 cut(s)	775
PaeR7I	CTCGAG	2 cut(s)	609, 1032
PagI	TCATGA	1 cut(s)	898
PciI	ACATGT	1 cut(s)	505
PcsI	WCGNNNNNNNCGW	1 cut(s)	382
PdmI	GAANNNNTTC	1 cut(s)	423
PfeI	GAWTC	6 cut(s)	64, 214, 363, 562, 723, 865
PfoI	TCCNGGA	1 cut(s)	748
PleI	GAGTC	5 cut(s)	528, 582, 601, 1024, 1161
PmaCI	CACGTG	1 cut(s)	331
PmlI	CACGTG	1 cut(s)	331
PpsI	GAGTC	5 cut(s)	528, 582, 601, 1024, 1161
Ppu21I	YACGTR	1 cut(s)	331
PscI	ACATGT	1 cut(s)	505
Psp6I	CCWGG	2 cut(s)	301, 748
PspCI	CACGTG	1 cut(s)	331
PspEI	GGTNACC	1 cut(s)	813
PspGI	CCWGG	2 cut(s)	301, 748
PspN4I	GGNNCC	2 cut(s)	494, 642
PspXI	VCTCGAGB	1 cut(s)	1032
PsuI	RGATCY	3 cut(s)	492, 640, 881
RsaI	GTAC	2 cut(s)	554, 620
RsaNI	GTAC	2 cut(s)	553, 619
RseI	CAYNNNNRTG	1 cut(s)	170
SaqAI	TTAA	6 cut(s)	27, 35, 83, 93, 380, 756
Sau3AI	GATC	7 cut(s)	133, 397, 492, 640, 848, 881, 930
ScaI	AGTACT	1 cut(s)	554
SchI	GAGTC	5 cut(s)	528, 582, 601, 1024, 1162
ScrFI	CCNGG	3 cut(s)	303, 454, 750
SduI	GDGCHC	1 cut(s)	351
SexAI	ACCWGGT	1 cut(s)	301
SfaNI	GCATC	2 cut(s)	697, 1165
SfcI	CTRYAG	1 cut(s)	1192
Sfr274I	CTCGAG	2 cut(s)	609, 1032
SfuI	TTCGAA	1 cut(s)	775
SlaI	CTCGAG	2 cut(s)	609, 1032
SmiMI	CAYNNNNRTG	1 cut(s)	170
SmlI	CTYRAG	4 cut(s)	317, 609, 938, 1032
SmoI	CTYRAG	4 cut(s)	317, 609, 938, 1032
SsiI	CCGC	1 cut(s)	187
SspMI	CTAG	5 cut(s)	53, 254, 275, 1122, 1158
StyD4I	CCNGG	3 cut(s)	301, 452, 748
StyI	CCWWGG	1 cut(s)	148
TaaI	ACNGT	4 cut(s)	579, 819, 919, 1060
TaiI	ACGT	1 cut(s)	333
TatI	WGTACW	2 cut(s)	552, 618
TfiI	GAWTC	6 cut(s)	64, 214, 363, 562, 723, 865
Tru1I	TTAA	6 cut(s)	27, 35, 83, 93, 380, 756
Tru9I	TTAA	6 cut(s)	27, 35, 83, 93, 380, 756
TseFI	GTSAC	4 cut(s)	143, 407, 448, 813
Tsp45I	GTSAC	4 cut(s)	143, 407, 448, 813
TspDTI	ATGAA	6 cut(s)	17, 887, 915, 983, 1043, 1227
TspGWI	ACGGA	2 cut(s)	395, 485
XapI	RAATTY	3 cut(s)	200, 739, 970
XbaI	TCTAGA	1 cut(s)	253
XceI	RCATGY	1 cut(s)	509
XhoI	CTCGAG	2 cut(s)	609, 1032
XmnI	GAANNNNTTC	1 cut(s)	423
XspI	CTAG	5 cut(s)	53, 254, 275, 1122, 1158
ZrmI	AGTACT	1 cut(s)	554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.