FvH4_3g19980

Plant organelle RNA recognition domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0009357
Physical Location & Seq
Forward (+)
13126060 .. 13128991
2932 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g19980.t3

Sequence Viewer

Length: 1377 bp
ATGAACACCTTCTTCACCATCTCCTCCCATTTCCTCAAACCCAAATCCAAAACCCTCCTCCACCCAATCCTCCACAGCCTCACCTCCACCCGCCTCATCTCCAAATCCACCTCCATCCCCAAGAAAATGGACCGCGTCCGCGACCACGCCTACGACAACTACATGGAAATCGAGAAAAAAATCCGCAAAGTCCTCAAATTCCAAACCCTCATTCTCTCCCAACCCAACCAAATCATCCAAGCCTCCCGCCTCGACCTCCTCGCCCGCCGCCTCGGCTTCAAACCCCACGAGGCCGCCGCCTTCGTCCTCAAGTTCCCTCACTTTTTCGAGATTTACGAGCACCCGGTCCAGCGCATCCTCTACATCCGCTTAACCCGGAAAGCCCATCTCCAAATCGAGCAGGAGAATCGGGCCCTCCAGGCCCAGGTCCCTGACGCCGTGACCCGGCTCCGGAAGCTGGTCATGATGTCCAATACGGGTCGGGTCAGGCTGGAACATGTTCGGATTGCGAGGTATGAGTTTGGGCTACCCGATGATTTCGAGTACTCTGTTGTGCTTAAGTACCCTCAGTATTTTAGATTGTTTGATGCTGATGAGACTAGGAATAAGTACATTGAGTTAGTTGAGAGGGATGCTAGTTTAGGTGTGTGCGCTATAGAGAGGCTTAGGGAGATTGAGTATAGGGAGAAGGGGATTGATGCCGAGGATATAAGGTTTTCGTTTATTGTGAATTTTCCACCCGGGTTTAAGATTGGGAAGTATTATAGGATTGCGGTGTGGAAATGGCAGAGGGTGCCGTATTGGAGTCCTTATGAGGATGTAAGCGGGTATGACATGAGGTCTCTTGAGGCGCAGAAGAGGATGGAGAAGAGGGCGGTGGCGGTGATTCACGAGCTGTTGAATTTGACTGTGGAGAAGAAGATTACGTTGGAGAGGATTGCGCATTTTAGGATGGCGATGGATTTGCCAAAGAAGTTGAAGGAGTTTCTTCTTCAGCATCAGGGGATTTTCTACATTTCAACCAGGGGGAATCATGGGAAGCTGCATACGGTGTTTCTTAGGGAGGCGTATAGGAAGGGGGAGTTGATTGAGCCGAATGATTTGTATTTGGCGAGAAGGAAGTTGGCTGAGTTGGTGTTGATGAGCCCGAGGAAGGCAAAAATGGATAGTGAGTTGGTTAGTTACCATAGAGATTGGGGAGATGATGAGAGGGGGTTCATTGGAAGAGACCATGTTGAGAATGCTTTTGATGATTTTGGGGGTTCCAATGATGATAGGCAGGAGAGGGACTCGCATATAGGTGGTGATTATGACTCCGATACTGACGATGGTTGTGATAGAACTCTGGATGAAAAGGATGTCCCTGCAACAGATTGA

Protein Analysis

459

Amino Acids

53.99

Weight (kDa)

9.01

Isoelectric Point (pI)

37.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PORR PF11955 46 - 383 8.9e-111 Plant organelle RNA recognition domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 942
AccB1I GGYRCC 1 cut(s) 793
AccII CGCG 2 cut(s) 135, 141
AccIII TCCGGA 1 cut(s) 450
AcsI RAATTY 3 cut(s) 197, 730, 901
AcuI CTGAAG 1 cut(s) 977
AcyI GRCGYC 1 cut(s) 435
AfaI GTAC 3 cut(s) 545, 563, 611
AfiI CCNNNNNNNGG 5 cut(s) 424, 444, 450, 457, 1153
AflII CTTAAG 1 cut(s) 557
AflIII ACRYGT 1 cut(s) 496
AgsI TTSAA 4 cut(s) 280, 901, 979, 1020
AhdI GACNNNNNGTC 1 cut(s) 838
AjnI CCWGG 3 cut(s) 417, 423, 1022
AjuI GAANNNNNNNTTGG 4 cut(s) 195, 227, 911, 943
AluBI AGCT 3 cut(s) 457, 895, 1042
AluI AGCT 3 cut(s) 457, 895, 1042
Alw21I GWGCWC 1 cut(s) 342
Alw26I GTCTC 3 cut(s) 590, 846, 1221
Ama87I CYCGRG 2 cut(s) 740, 1147
Aor13HI TCCGGA 1 cut(s) 450
AoxI GGCC 3 cut(s) 291, 411, 420
ApaI GGGCCC 1 cut(s) 415
ApeKI GCWGC 1 cut(s) 1042
ApoI RAATTY 3 cut(s) 197, 730, 901
Asp700I GAANNNNTTC 2 cut(s) 8, 498
AspLEI GCGC 4 cut(s) 354, 653, 853, 943
AspS9I GGNCC 6 cut(s) 130, 346, 411, 412, 421, 427
AsuC2I CCSGG 5 cut(s) 344, 376, 445, 741, 742
AsuHPI GGTGA 4 cut(s) 7, 73, 895, 1316
AvaI CYCGRG 2 cut(s) 740, 1147
AvaII GGWCC 3 cut(s) 130, 346, 427
BaeGI GKGCMC 1 cut(s) 415
BanI GGYRCC 1 cut(s) 793
BanII GRGCYC 2 cut(s) 415, 1148
BauI CACGAG 2 cut(s) 287, 890
Bbv12I GWGCWC 1 cut(s) 342
BbvI GCAGC 1 cut(s) 1029
BccI CCATC 7 cut(s) 26, 122, 393, 856, 946, 952, 1322
BceAI ACGGC 2 cut(s) 422, 781
BcgI CGANNNNNNTGC 4 cut(s) 389, 423, 946, 980
BciT130I CCWGG 3 cut(s) 419, 425, 1024
BcnI CCSGG 5 cut(s) 344, 376, 445, 741, 742
BcoDI GTCTC 3 cut(s) 590, 846, 1221
BfaI CTAG 2 cut(s) 600, 636
BfmI CTRYAG 1 cut(s) 654
BfrI CTTAAG 1 cut(s) 557
BglI GCCNNNNNGGC 2 cut(s) 273, 419
BisI GCNGC 4 cut(s) 268, 294, 297, 1043
BlsI GCNGC 4 cut(s) 269, 295, 298, 1044
BmcAI AGTACT 1 cut(s) 545
Bme1390I CCNGG 8 cut(s) 344, 376, 419, 425, 445, 741, 742, 1024
Bme18I GGWCC 3 cut(s) 130, 346, 427
BmeRI GACNNNNNGTC 1 cut(s) 838
BmeT110I CYCGRG 2 cut(s) 740, 1147
BmgT120I GGNCC 6 cut(s) 130, 346, 411, 412, 421, 427
BmiI GGNNCC 5 cut(s) 413, 429, 449, 795, 1264
BmrFI CCNGG 8 cut(s) 344, 376, 419, 425, 445, 741, 742, 1024
BmsI GCATC 5 cut(s) 363, 577, 622, 688, 1006
BplI GAGNNNNNCTC 2 cut(s) 1274, 1306
BpmI CTGGAG 1 cut(s) 401
Bpu10I CCTNAGC 1 cut(s) 665
BpuEI CTTGAG 2 cut(s) 293, 866
BpuMI CCSGG 5 cut(s) 344, 376, 445, 741, 742
BsaHI GRCGYC 1 cut(s) 435
BsaI GGTCTC 2 cut(s) 846, 1221
BsaJI CCNNGG 6 cut(s) 271, 423, 702, 740, 1023, 1148
BsaWI WCCGGW 1 cut(s) 450
BsaXI ACNNNNNCTCC 2 cut(s) 662, 692
Bsc4I CCNNNNNNNGG 5 cut(s) 424, 444, 450, 457, 1153
BseAI TCCGGA 1 cut(s) 450
BseBI CCWGG 3 cut(s) 419, 425, 1024
BseDI CCNNGG 6 cut(s) 271, 423, 702, 740, 1023, 1148
BseLI CCNNNNNNNGG 5 cut(s) 424, 444, 450, 457, 1153
BseMII CTCAG 2 cut(s) 581, 1119
BseRI GAGGAG 3 cut(s) 13, 47, 248
BseSI GKGCMC 1 cut(s) 415
BseXI GCAGC 1 cut(s) 1029
Bsh1236I CGCG 2 cut(s) 135, 141
BshFI GGCC 3 cut(s) 293, 413, 422
BshNI GGYRCC 1 cut(s) 793
BsiHKAI GWGCWC 1 cut(s) 342
BsiHKCI CYCGRG 2 cut(s) 740, 1147
BsiSI CCGG 5 cut(s) 344, 376, 445, 451, 741
BslFI GGGAC 3 cut(s) 413, 1301, 1346
BslI CCNNNNNNNGG 5 cut(s) 424, 444, 450, 457, 1153
BsmAI GTCTC 3 cut(s) 590, 846, 1221
BsmFI GGGAC 3 cut(s) 413, 1301, 1346
BsmI GAATGC 1 cut(s) 1246
BsnI GGCC 3 cut(s) 293, 413, 422
Bso31I GGTCTC 2 cut(s) 846, 1221
BsoBI CYCGRG 2 cut(s) 740, 1147
Bsp120I GGGCCC 1 cut(s) 411
Bsp1286I GDGCHC 3 cut(s) 342, 415, 1148
Bsp13I TCCGGA 1 cut(s) 450
BspANI GGCC 3 cut(s) 293, 413, 422
BspCNI CTCAG 2 cut(s) 580, 1120
BspEI TCCGGA 1 cut(s) 450
BspFNI CGCG 2 cut(s) 135, 141
BspHI TCATGA 1 cut(s) 462
BspLI GGNNCC 5 cut(s) 413, 429, 449, 795, 1264
BspT107I GGYRCC 1 cut(s) 793
BspTI CTTAAG 1 cut(s) 557
BspTNI GGTCTC 2 cut(s) 846, 1221
BssECI CCNNGG 6 cut(s) 271, 423, 702, 740, 1023, 1148
BssNI GRCGYC 1 cut(s) 435
BssSI CACGAG 2 cut(s) 287, 890
Bst2BI CACGAG 2 cut(s) 287, 890
Bst2UI CCWGG 3 cut(s) 419, 425, 1024
Bst4CI ACNGT 2 cut(s) 910, 1051
Bst6I CTCTTC 3 cut(s) 851, 863, 1219
BstACI GRCGYC 1 cut(s) 435
BstAFI CTTAAG 1 cut(s) 557
BstAPI GCANNNNNTGC 1 cut(s) 793
BstC8I GCNNGC 1 cut(s) 265
BstDEI CTNAG 4 cut(s) 567, 665, 1058, 1128
BstFNI CGCG 2 cut(s) 135, 141
BstHHI GCGC 4 cut(s) 354, 653, 853, 943
BstMAI GTCTC 3 cut(s) 590, 846, 1221
BstMWI GCNNNNNNNGC 4 cut(s) 273, 419, 454, 793
BstNI CCWGG 3 cut(s) 419, 425, 1024
BstNSI RCATGY 1 cut(s) 500
BstSCI CCNGG 8 cut(s) 342, 374, 417, 423, 443, 739, 740, 1022
BstSFI CTRYAG 1 cut(s) 654
BstSLI GKGCMC 1 cut(s) 415
BstUI CGCG 2 cut(s) 135, 141
BstV1I GCAGC 1 cut(s) 1029
BstXI CCANNNNNNTGG 1 cut(s) 127
BsuRI GGCC 3 cut(s) 293, 413, 422
BtgZI GCGATG 1 cut(s) 971
Cac8I GCNNGC 1 cut(s) 265
CciI TCATGA 1 cut(s) 462
CfoI GCGC 4 cut(s) 354, 653, 853, 943
Cfr13I GGNCC 6 cut(s) 130, 346, 411, 412, 421, 427
Cfr9I CCCGGG 1 cut(s) 740
CseI GACGC 2 cut(s) 124, 443
Csp6I GTAC 3 cut(s) 544, 562, 610
CviAII CATG 6 cut(s) 163, 463, 497, 835, 1034, 1232
CviQI GTAC 3 cut(s) 544, 562, 610
DdeI CTNAG 4 cut(s) 567, 665, 1058, 1128
DriI GACNNNNNGTC 1 cut(s) 838
Eam1104I CTCTTC 3 cut(s) 851, 863, 1219
Eam1105I GACNNNNNGTC 1 cut(s) 838
EarI CTCTTC 3 cut(s) 851, 863, 1219
Eco24I GRGCYC 2 cut(s) 415, 1148
Eco31I GGTCTC 2 cut(s) 846, 1221
Eco47I GGWCC 3 cut(s) 130, 346, 427
Eco57I CTGAAG 1 cut(s) 977
Eco88I CYCGRG 2 cut(s) 740, 1147
EcoO109I RGGNCCY 2 cut(s) 412, 427
EcoRII CCWGG 3 cut(s) 417, 423, 1022
EcoT38I GRGCYC 2 cut(s) 415, 1148
FaeI CATG 6 cut(s) 166, 466, 500, 838, 1037, 1235
FaqI GGGAC 3 cut(s) 413, 1301, 1346
FatI CATG 6 cut(s) 162, 462, 496, 834, 1033, 1231
FauI CCCGC 4 cut(s) 98, 254, 272, 818
Fnu4HI GCNGC 4 cut(s) 268, 294, 297, 1043
FriOI GRGCYC 2 cut(s) 415, 1148
Fsp4HI GCNGC 4 cut(s) 268, 294, 297, 1043
FspBI CTAG 2 cut(s) 600, 636
FspI TGCGCA 1 cut(s) 942
GlaI GCGC 4 cut(s) 353, 652, 852, 942
GluI GCNGC 4 cut(s) 268, 294, 297, 1043
GsuI CTGGAG 1 cut(s) 401
HaeIII GGCC 3 cut(s) 293, 413, 422
HapII CCGG 5 cut(s) 344, 376, 445, 451, 741
HgaI GACGC 2 cut(s) 124, 443
HhaI GCGC 4 cut(s) 354, 653, 853, 943
Hin1I GRCGYC 1 cut(s) 435
Hin1II CATG 6 cut(s) 166, 466, 500, 838, 1037, 1235
Hin6I GCGC 4 cut(s) 352, 651, 851, 941
HinP1I GCGC 4 cut(s) 352, 651, 851, 941
HinfI GANTC 6 cut(s) 406, 805, 886, 1030, 1289, 1313
HpaII CCGG 5 cut(s) 344, 376, 445, 451, 741
HphI GGTGA 4 cut(s) 7, 73, 895, 1316
Hpy188I TCNGA 2 cut(s) 504, 1318
Hpy188III TCNNGA 7 cut(s) 172, 328, 451, 463, 845, 890, 1346
HpyAV CCTTC 7 cut(s) 19, 310, 682, 973, 1069, 1110, 1147
HpyCH4III ACNGT 2 cut(s) 910, 1051
HpyCH4IV ACGT 1 cut(s) 926
HpyCH4V TGCA 2 cut(s) 1045, 1367
HpyF10VI GCNNNNNNNGC 4 cut(s) 273, 419, 454, 793
HpyF3I CTNAG 4 cut(s) 567, 665, 1058, 1128
HpySE526I ACGT 1 cut(s) 926
Hsp92I GRCGYC 1 cut(s) 435
Hsp92II CATG 6 cut(s) 166, 466, 500, 838, 1037, 1235
HspAI GCGC 4 cut(s) 352, 651, 851, 941
Kpn2I TCCGGA 1 cut(s) 450
LmnI GCTCC 1 cut(s) 453
Lsp1109I GCAGC 1 cut(s) 1029
LweI GCATC 5 cut(s) 363, 577, 622, 688, 1006
MaeI CTAG 2 cut(s) 600, 636
MaeII ACGT 1 cut(s) 926
MaeIII GTNAC 2 cut(s) 439, 1181
MboII GAAGA 8 cut(s) 4, 868, 880, 928, 931, 980, 983, 1236
MhlI GDGCHC 3 cut(s) 342, 415, 1148
MluCI AATT 3 cut(s) 197, 730, 901
MlyI GAGTC 3 cut(s) 814, 1283, 1307
MmeI TCCRAC 1 cut(s) 909
MroI TCCGGA 1 cut(s) 450
MroXI GAANNNNTTC 2 cut(s) 8, 498
MseI TTAA 3 cut(s) 371, 558, 747
MslI CAYNNNNRTG 1 cut(s) 1299
MspCI CTTAAG 1 cut(s) 557
MspI CCGG 5 cut(s) 344, 376, 445, 451, 741
MspR9I CCNGG 8 cut(s) 344, 376, 419, 425, 445, 741, 742, 1024
Mva1269I GAATGC 1 cut(s) 1246
MvaI CCWGG 3 cut(s) 419, 425, 1024
MvnI CGCG 2 cut(s) 135, 141
MwoI GCNNNNNNNGC 4 cut(s) 273, 419, 454, 793
NciI CCSGG 5 cut(s) 344, 376, 445, 741, 742
NlaIII CATG 6 cut(s) 166, 466, 500, 838, 1037, 1235
NlaIV GGNNCC 5 cut(s) 413, 429, 449, 795, 1264
NmeAIII GCCGAG 2 cut(s) 252, 727
NmuCI GTSAC 1 cut(s) 439
NsbI TGCGCA 1 cut(s) 942
NspI RCATGY 1 cut(s) 500
PagI TCATGA 1 cut(s) 462
PciI ACATGT 1 cut(s) 496
PcsI WCGNNNNNNNCGW 1 cut(s) 333
PctI GAATGC 1 cut(s) 1246
PdmI GAANNNNTTC 2 cut(s) 8, 498
PfeI GAWTC 3 cut(s) 406, 886, 1030
PflFI GACNNNGTC 1 cut(s) 134
PkrI GCNGC 4 cut(s) 269, 295, 298, 1044
PleI GAGTC 3 cut(s) 813, 1283, 1307
PpsI GAGTC 3 cut(s) 813, 1283, 1307
PpuMI RGGWCCY 1 cut(s) 427
PscI ACATGT 1 cut(s) 496
Psp5II RGGWCCY 1 cut(s) 427
Psp6I CCWGG 3 cut(s) 417, 423, 1022
PspGI CCWGG 3 cut(s) 417, 423, 1022
PspN4I GGNNCC 5 cut(s) 413, 429, 449, 795, 1264
PspOMI GGGCCC 1 cut(s) 411
PspPI GGNCC 6 cut(s) 130, 346, 411, 412, 421, 427
PspPPI RGGWCCY 1 cut(s) 427
PsyI GACNNNGTC 1 cut(s) 134
RsaI GTAC 3 cut(s) 545, 563, 611
RsaNI GTAC 3 cut(s) 544, 562, 610
RseI CAYNNNNRTG 1 cut(s) 1299
SaqAI TTAA 3 cut(s) 371, 558, 747
SatI GCNGC 4 cut(s) 268, 294, 297, 1043
Sau96I GGNCC 6 cut(s) 130, 346, 411, 412, 421, 427
ScaI AGTACT 1 cut(s) 545
SchI GAGTC 3 cut(s) 814, 1283, 1307
ScrFI CCNGG 8 cut(s) 344, 376, 419, 425, 445, 741, 742, 1024
SduI GDGCHC 3 cut(s) 342, 415, 1148
SfaNI GCATC 5 cut(s) 363, 577, 622, 688, 1006
SfcI CTRYAG 1 cut(s) 654
SfiI GGCCNNNNNGGCC 1 cut(s) 419
SinI GGWCC 3 cut(s) 130, 346, 427
SmaI CCCGGG 1 cut(s) 742
SmiMI CAYNNNNRTG 1 cut(s) 1299
SmlI CTYRAG 3 cut(s) 308, 557, 845
SmoI CTYRAG 3 cut(s) 308, 557, 845
Sse9I AATT 3 cut(s) 197, 730, 901
SspMI CTAG 2 cut(s) 600, 636
StyD4I CCNGG 8 cut(s) 342, 374, 417, 423, 443, 739, 740, 1022
TaaI ACNGT 2 cut(s) 910, 1051
TaiI ACGT 1 cut(s) 929
TaqI TCGA 5 cut(s) 171, 252, 327, 396, 540
TasI AATT 3 cut(s) 197, 730, 901
TatI WGTACW 2 cut(s) 543, 609
TauI GCSGC 3 cut(s) 270, 296, 299
TfiI GAWTC 3 cut(s) 406, 886, 1030
Tru1I TTAA 3 cut(s) 371, 558, 747
Tru9I TTAA 3 cut(s) 371, 558, 747
TseFI GTSAC 1 cut(s) 439
TseI GCWGC 1 cut(s) 1042
Tsp45I GTSAC 1 cut(s) 439
TspDTI ATGAA 3 cut(s) 17, 1207, 1365
TspMI CCCGGG 1 cut(s) 740
Tth111I GACNNNGTC 1 cut(s) 134
Vha464I CTTAAG 1 cut(s) 557
VpaK11BI GGWCC 3 cut(s) 130, 346, 427
XapI RAATTY 3 cut(s) 197, 730, 901
XceI RCATGY 1 cut(s) 500
XmaI CCCGGG 1 cut(s) 740
XmnI GAANNNNTTC 2 cut(s) 8, 498
XspI CTAG 2 cut(s) 600, 636
ZrmI AGTACT 1 cut(s) 545
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.