Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0009357

Physical Location & Seq

Genomic Coordinates Forward (+)

28062360 .. 28065228

Gene Structure 2869 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033496

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1947 bp

ATGAACATCTTCTTCACCTATTCCTCCCATTTCCTCAAACCCAACTCCAAAACCCTCCACTCCATCCCTCTCCTCCTCCACAACCTCACCTCCACCAGACCCATCTCCAAATCCACCTCCATCCCCAAGAAAATGGACCGCGTCCGCGACCACGGCTACGACAACTACATGGAAATCGAGAAGAAGATCCGCAAAGTCCTCAAATTCCAGGCCCTCATTCTCTCCCAGCCCCACCAAATCATCCAAGCCTCTCGCCTCGACATGCTCGCCCGCCGCCTCGGCTTCAAGCAGCACGAGGCCGCCGCCTTCGTCCTCAAGTTCCCTCACGTTTTCGAGATTTACGAGCACCCGGTTCAGCGCGTCCTCTATTGCCGGCTGACCCGAAAAGCCCACCTCCAAATCGAGCAGGAGAAGCGGGCCCTGGCGGCCCAGGTCCCCGACGCCGTGACCCGGCTCAGGAAGCTGGTGATGATGTCCAATACGGGTCGGATCCGGCTCGAGCATGTTCGGATTGCCAGGTATGAATTCGGGTTACCCGATGATTTCGAATACTCTGTAGTTCTCAAGTACCCTGAGTATTTCAGATTGTTTGATGCTGATGAGAGTAGGAGTAAGTACATTGAGGTAGTTGAGAAGGACCCAAGTTTAGCTGTTTGTGCTATAGAGAAGCTTAGGGAGAGAGAGTATAGAGAGAAGGGGGTTGATGCTGAGGATATAAGGTTTTCATTCATTGTGAATTTTCCGCCGGGGTTTAAGATAGGGAAGTATTATAGGATTGCGGTGTGGAAATGGCAGAGAGTGCCGTATTGGAGTCCTTATGAGGATGTTTCGGGGTATGACATGAGGTCGCTTGAGGCGCAGAAGAGGATGGAGAAGAGAGCCGTGGCGGTGATTCACGAGCTGTTGAATTTGACCGTGGAGAAGAAGATTACGTTGGAGAGGATTGCGCATTTTAGAATGGCGATGAATCTGCCGAAGAAGTTGAAGGAGTTTCTTCTGCAGCATCAGGGGATTTTCTACATTTCGACTAGGGGGAATCACGGGAAGCTTCATACGGTGTTTCTTAGGGAGGCTTATAGGAAGGGTGAGTTGGTAGAGCCGAATGATTTGTATTTGGCGAGAAGAAAGTTGGCTGAGTTGGTGTTGATGAGCCCAAGGAAGGCGAAAATGGATAGTGAATTGGTTAGTTACCATAGAGACTGGGGGGATGATGAGAGGGGGTTCGTTGGAAGAGAATGTGTTGAGAATGCTTTTGAAGATTTTGGGGGTTACAATGATGATAGGCAGAGGAGGGACTTGAATGCGGGTGATGATTATGACTCCGATACAGACGGTGGTTCTGATAAAACTCTGGATGAAGAGGATGAGATTGAAGTGAGGGAGACTTTGATCACCATTTTACAGGCCAAGTGCTGCAACATCTGTTCGGATGCCAGTGTCAAGGTCAAGGCTGTTCGGATGCCAGTGTCAAGGTCAGCTGCCATCCATTGCAAGCCATGGTACAGATTGACAAGGATCACGGACGTTGCAAACAGTGATTCTCTCTTTAATGCCAAGTGTCTTGATGTCAATAACAATTATTACATGCTGATGTTCCAAGAGACGAGGACGGACGCTTCAGGGTCAGCAGTTGTGTATGCACTGATTACTTCAACAAGTTCAGATATCATGATGGATGCCGCGTACGAGGGTGGTGATTCTACTTATGTAAATCTTTTACCATCAGGATTTGCAATCCTTCCTTGTGGTACATCTGACTATGCCAAAGGTGAAGGAAATGGCTCTGATAACGGTGAATGTCTGCCAACAGTTGGATTCCGAATCGTGTGTGATGGTGGCCAACCGACTTCCAAGCTCACTATGCTGTCGGTTAAGACTAAATTGATCTCATCTCCCCCACCATTCAGAAGATCAGAACTGGCTCTTCAAATAAATGATGGCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007275 GO:0008150 GO:0008285 GO:0009653 GO:0009791 GO:0010015 GO:0010101 GO:0010102 GO:0022622 GO:0032501 GO:0032502 GO:0042127 GO:0048364 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0065007 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PORR

Protein Analysis

649

Amino Acids

74.47

Weight (kDa)

8.61

Isoelectric Point (pI)

42.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PORR	PF11955	48 - 385	7e-113	Plant organelle RNA recognition domain
PDF2_C	PF25797	510 - 626	6.5e-20	PDF2-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009357)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33495
fragaria_vesca	FvH4_3g19980 FvH4_3g19980 FvH4_3g19980 FvH4_3g19980 FvH4_3g19980 FvH4_3g19980
malus_domestica	MD01G1198200.v1.1 MD07G1266100.v1.1
prunus_persica	Prupe.2G291500_v2.0.a1
pyrus_communis	pycom01g20830
rosa_chinensis	RchiOBHm_Chr5g0033651
rosa_laevigata	RLG00000033496
rosa_multiflora	Rmu_co8282813.1_g000001 Rmu_sc0001768.1_g000027
rosa_roxburghii	Rroxscaffold_1G00046440
rosa_rugosa	Rorug05G0141500
rosa_samantha	Rh5AG232600 Rh5BG233200 Rh5CG262100 Rh5DG238900
rosa_wichuraiana	Rw5G021610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	948
AccB7I	CCANNNNNTGG	1 cut(s)	1811
AccII	CGCG	4 cut(s)	141, 147, 360, 1682
AclWI	GGATC	4 cut(s)	181, 484, 497, 1523
AcoI	YGGCCR	1 cut(s)	1837
AcsI	RAATTY	4 cut(s)	203, 524, 736, 907
AcuI	CTGAAG	1 cut(s)	1602
AcyI	GRCGYC	1 cut(s)	441
AfaI	GTAC	5 cut(s)	569, 617, 1502, 1685, 1750
AfiI	CCNNNNNNNGG	4 cut(s)	450, 456, 1159, 1811
AgsI	TTSAA	8 cut(s)	286, 907, 985, 1256, 1300, 1373, 1653, 1928
AhdI	GACNNNNNGTC	1 cut(s)	844
AjnI	CCWGG	4 cut(s)	207, 420, 429, 515
AjuI	GAANNNNNNNTTGG	4 cut(s)	917, 949, 1073, 1105
AluBI	AGCT	7 cut(s)	463, 650, 670, 901, 1048, 1478, 1855
AluI	AGCT	7 cut(s)	463, 650, 670, 901, 1048, 1478, 1855
Alw21I	GWGCWC	1 cut(s)	348
Alw26I	GTCTC	3 cut(s)	1191, 1376, 1595
AlwI	GGATC	4 cut(s)	181, 484, 497, 1523
Ama87I	CYCGRG	1 cut(s)	497
AoxI	GGCC	7 cut(s)	210, 297, 417, 426, 1404, 1837, 1939
ApaI	GGGCCC	1 cut(s)	421
ApeKI	GCWGC	4 cut(s)	289, 1000, 1413, 1478
ApoI	RAATTY	4 cut(s)	203, 524, 736, 907
Asp700I	GAANNNNTTC	1 cut(s)	8
AspLEI	GCGC	3 cut(s)	360, 859, 949
AspS9I	GGNCC	8 cut(s)	136, 211, 417, 418, 427, 433, 637, 1940
AsuC2I	CCSGG	3 cut(s)	350, 451, 747
AsuII	TTCGAA	1 cut(s)	546
AvaI	CYCGRG	1 cut(s)	497
AvaII	GGWCC	3 cut(s)	136, 433, 637
BaeGI	GKGCMC	1 cut(s)	421
BalI	TGGCCA	1 cut(s)	1839
BamHI	GGATCC	1 cut(s)	489
BanII	GRGCYC	2 cut(s)	421, 1154
BauI	CACGAG	2 cut(s)	293, 896
Bbv12I	GWGCWC	1 cut(s)	348
BbvCI	CCTCAGC	1 cut(s)	708
BbvI	GCAGC	4 cut(s)	301, 1012, 1400, 1465
BccI	CCATC	9 cut(s)	71, 110, 128, 862, 1490, 1666, 1729, 1826, 1931
BceAI	ACGGC	4 cut(s)	169, 428, 787, 866
BcgI	CGANNNNNNTGC	2 cut(s)	952, 986
BciT130I	CCWGG	4 cut(s)	209, 422, 431, 517
BclI	TGATCA	1 cut(s)	1389
BcnI	CCSGG	3 cut(s)	350, 451, 747
BcoDI	GTCTC	3 cut(s)	1191, 1376, 1595
BfaI	CTAG	1 cut(s)	1029
BfmI	CTRYAG	3 cut(s)	555, 660, 998
BglI	GCCNNNNNGGC	2 cut(s)	279, 425
BisI	GCNGC	9 cut(s)	274, 290, 300, 303, 426, 1001, 1414, 1479, 1680
BlsI	GCNGC	9 cut(s)	275, 291, 301, 304, 427, 1002, 1415, 1480, 1681
Bme1390I	CCNGG	7 cut(s)	209, 350, 422, 431, 451, 517, 747
Bme18I	GGWCC	3 cut(s)	136, 433, 637
BmeRI	GACNNNNNGTC	1 cut(s)	844
BmeT110I	CYCGRG	1 cut(s)	497
BmgT120I	GGNCC	8 cut(s)	136, 211, 417, 418, 427, 433, 637, 1940
BmiI	GGNNCC	4 cut(s)	419, 435, 491, 639
BmrFI	CCNGG	7 cut(s)	209, 350, 422, 431, 451, 517, 747
BmrI	ACTGGG	1 cut(s)	1210
BmsI	GCATC	6 cut(s)	583, 694, 1012, 1420, 1449, 1666
BmuI	ACTGGG	1 cut(s)	1210
Bpu10I	CCTNAGC	3 cut(s)	455, 671, 708
Bpu14I	TTCGAA	1 cut(s)	546
BpuEI	CTTGAG	3 cut(s)	299, 548, 872
BpuMI	CCSGG	3 cut(s)	350, 451, 747
BsaHI	GRCGYC	1 cut(s)	441
BsaJI	CCNNGG	9 cut(s)	151, 277, 420, 429, 746, 882, 915, 1154, 1496
BsaXI	ACNNNNNCTCC	4 cut(s)	74, 104, 668, 698
Bsc4I	CCNNNNNNNGG	4 cut(s)	450, 456, 1159, 1811
Bse118I	RCCGGY	1 cut(s)	372
Bse1I	ACTGG	4 cut(s)	1205, 1434, 1463, 1923
Bse3DI	GCAATG	1 cut(s)	1486
BseBI	CCWGG	4 cut(s)	209, 422, 431, 517
BseDI	CCNNGG	9 cut(s)	151, 277, 420, 429, 746, 882, 915, 1154, 1496
BseLI	CCNNNNNNNGG	4 cut(s)	450, 456, 1159, 1811
BseMI	GCAATG	1 cut(s)	1486
BseMII	CTCAG	4 cut(s)	469, 564, 699, 1125
BseNI	ACTGG	4 cut(s)	1205, 1434, 1463, 1923
BseRI	GAGGAG	3 cut(s)	62, 65, 1303
BseSI	GKGCMC	1 cut(s)	421
BseXI	GCAGC	4 cut(s)	301, 1012, 1400, 1465
BseYI	CCCAGC	1 cut(s)	225
Bsh1236I	CGCG	4 cut(s)	141, 147, 360, 1682
BshFI	GGCC	7 cut(s)	212, 299, 419, 428, 1406, 1839, 1941
BsiHKAI	GWGCWC	1 cut(s)	348
BsiHKCI	CYCGRG	1 cut(s)	497
BsiSI	CCGG	5 cut(s)	350, 373, 451, 493, 746
BsiWI	CGTACG	1 cut(s)	1683
BslFI	GGGAC	2 cut(s)	419, 1307
BslI	CCNNNNNNNGG	4 cut(s)	450, 456, 1159, 1811
BsmAI	GTCTC	3 cut(s)	1191, 1376, 1595
BsmBI	CGTCTC	1 cut(s)	1595
BsmFI	GGGAC	2 cut(s)	419, 1307
BsmI	GAATGC	2 cut(s)	1252, 1306
BsnI	GGCC	7 cut(s)	212, 299, 419, 428, 1406, 1839, 1941
BsoBI	CYCGRG	1 cut(s)	497
Bsp119I	TTCGAA	1 cut(s)	546
Bsp120I	GGGCCC	1 cut(s)	417
Bsp1286I	GDGCHC	3 cut(s)	348, 421, 1154
Bsp143I	GATC	6 cut(s)	186, 489, 1389, 1515, 1884, 1910
Bsp19I	CCATGG	1 cut(s)	1496
BspANI	GGCC	7 cut(s)	212, 299, 419, 428, 1406, 1839, 1941
BspCNI	CTCAG	4 cut(s)	468, 565, 700, 1126
BspFNI	CGCG	4 cut(s)	141, 147, 360, 1682
BspHI	TCATGA	1 cut(s)	1668
BspLI	GGNNCC	4 cut(s)	419, 435, 491, 639
BspMAI	CTGCAG	1 cut(s)	1002
BspPI	GGATC	4 cut(s)	181, 484, 497, 1523
BspQI	GCTCTTC	1 cut(s)	1929
BspT104I	TTCGAA	1 cut(s)	546
BsrDI	GCAATG	1 cut(s)	1486
BsrFI	RCCGGY	1 cut(s)	372
BsrI	ACTGG	4 cut(s)	1205, 1434, 1463, 1923
BssAI	RCCGGY	1 cut(s)	372
BssECI	CCNNGG	9 cut(s)	151, 277, 420, 429, 746, 882, 915, 1154, 1496
BssMI	GATC	6 cut(s)	186, 489, 1389, 1515, 1884, 1910
BssNI	GRCGYC	1 cut(s)	441
BssSI	CACGAG	2 cut(s)	293, 896
BssT1I	CCWWGG	2 cut(s)	1154, 1496
Bst2BI	CACGAG	2 cut(s)	293, 896
Bst2UI	CCWGG	4 cut(s)	209, 422, 431, 517
Bst4CI	ACNGT	6 cut(s)	916, 1057, 1334, 1535, 1793, 1810
Bst6I	CTCTTC	5 cut(s)	857, 869, 1225, 1353, 1929
BstACI	GRCGYC	1 cut(s)	441
BstAPI	GCANNNNNTGC	1 cut(s)	799
BstBI	TTCGAA	1 cut(s)	546
BstC8I	GCNNGC	5 cut(s)	267, 271, 374, 417, 1493
BstDEI	CTNAG	6 cut(s)	455, 573, 671, 708, 1064, 1134
BstDSI	CCRYGG	4 cut(s)	151, 882, 915, 1496
BstEII	GGTNACC	1 cut(s)	531
BstFNI	CGCG	4 cut(s)	141, 147, 360, 1682
BstHHI	GCGC	3 cut(s)	360, 859, 949
BstKTI	GATC	6 cut(s)	189, 492, 1392, 1518, 1887, 1913
BstMAI	GTCTC	3 cut(s)	1191, 1376, 1595
BstMBI	GATC	6 cut(s)	186, 489, 1389, 1515, 1884, 1910
BstMWI	GCNNNNNNNGC	9 cut(s)	153, 279, 412, 425, 460, 656, 799, 856, 1861
BstNI	CCWGG	4 cut(s)	209, 422, 431, 517
BstNSI	RCATGY	3 cut(s)	265, 506, 1588
BstPI	GGTNACC	1 cut(s)	531
BstSCI	CCNGG	7 cut(s)	207, 348, 420, 429, 449, 515, 745
BstSFI	CTRYAG	3 cut(s)	555, 660, 998
BstSLI	GKGCMC	1 cut(s)	421
BstUI	CGCG	4 cut(s)	141, 147, 360, 1682
BstV1I	GCAGC	4 cut(s)	301, 1012, 1400, 1465
BstX2I	RGATCY	2 cut(s)	186, 489
BstXI	CCANNNNNNTGG	1 cut(s)	133
BstYI	RGATCY	2 cut(s)	186, 489
BsuRI	GGCC	7 cut(s)	212, 299, 419, 428, 1406, 1839, 1941
BtgI	CCRYGG	4 cut(s)	151, 882, 915, 1496
BtgZI	GCGATG	1 cut(s)	977
BtsIMutI	CAGTG	4 cut(s)	1441, 1470, 1540, 1640
Cac8I	GCNNGC	5 cut(s)	267, 271, 374, 417, 1493
CciI	TCATGA	1 cut(s)	1668
CfoI	GCGC	3 cut(s)	360, 859, 949
Cfr10I	RCCGGY	1 cut(s)	372
Cfr13I	GGNCC	8 cut(s)	136, 211, 417, 418, 427, 433, 637, 1940
CseI	GACGC	4 cut(s)	130, 349, 449, 1622
Csp6I	GTAC	5 cut(s)	568, 616, 1501, 1684, 1749
CviAII	CATG	7 cut(s)	169, 262, 503, 841, 1497, 1585, 1669
CviQI	GTAC	5 cut(s)	568, 616, 1501, 1684, 1749
DdeI	CTNAG	6 cut(s)	455, 573, 671, 708, 1064, 1134
DpnI	GATC	6 cut(s)	188, 491, 1391, 1517, 1886, 1912
DpnII	GATC	6 cut(s)	186, 489, 1389, 1515, 1884, 1910
DriI	GACNNNNNGTC	1 cut(s)	844
EaeI	YGGCCR	1 cut(s)	1837
Eam1104I	CTCTTC	5 cut(s)	857, 869, 1225, 1353, 1929
Eam1105I	GACNNNNNGTC	1 cut(s)	844
EarI	CTCTTC	5 cut(s)	857, 869, 1225, 1353, 1929
EciI	GGCGGA	1 cut(s)	732
Eco130I	CCWWGG	2 cut(s)	1154, 1496
Eco24I	GRGCYC	2 cut(s)	421, 1154
Eco32I	GATATC	1 cut(s)	1666
Eco47I	GGWCC	3 cut(s)	136, 433, 637
Eco57I	CTGAAG	1 cut(s)	1602
Eco88I	CYCGRG	1 cut(s)	497
Eco91I	GGTNACC	1 cut(s)	531
EcoO109I	RGGNCCY	4 cut(s)	211, 418, 433, 637
EcoO65I	GGTNACC	1 cut(s)	531
EcoRI	GAATTC	1 cut(s)	524
EcoRII	CCWGG	4 cut(s)	207, 420, 429, 515
EcoRV	GATATC	1 cut(s)	1666
EcoT14I	CCWWGG	2 cut(s)	1154, 1496
EcoT38I	GRGCYC	2 cut(s)	421, 1154
ErhI	CCWWGG	2 cut(s)	1154, 1496
Esp3I	CGTCTC	1 cut(s)	1595
FaeI	CATG	7 cut(s)	172, 265, 506, 844, 1500, 1588, 1672
FaqI	GGGAC	2 cut(s)	419, 1307
FatI	CATG	7 cut(s)	168, 261, 502, 840, 1496, 1584, 1668
FauI	CCCGC	3 cut(s)	278, 408, 1297
FbaI	TGATCA	1 cut(s)	1389
Fnu4HI	GCNGC	9 cut(s)	274, 290, 300, 303, 426, 1001, 1414, 1479, 1680
FriOI	GRGCYC	2 cut(s)	421, 1154
Fsp4HI	GCNGC	9 cut(s)	274, 290, 300, 303, 426, 1001, 1414, 1479, 1680
FspBI	CTAG	1 cut(s)	1029
FspI	TGCGCA	1 cut(s)	948
GlaI	GCGC	3 cut(s)	359, 858, 948
GluI	GCNGC	9 cut(s)	274, 290, 300, 303, 426, 1001, 1414, 1479, 1680
GsaI	CCCAGC	1 cut(s)	229
HaeIII	GGCC	7 cut(s)	212, 299, 419, 428, 1406, 1839, 1941
HapII	CCGG	5 cut(s)	350, 373, 451, 493, 746
HgaI	GACGC	4 cut(s)	130, 349, 449, 1622
HhaI	GCGC	3 cut(s)	360, 859, 949
Hin1I	GRCGYC	1 cut(s)	441
Hin1II	CATG	7 cut(s)	172, 265, 506, 844, 1500, 1588, 1672
Hin6I	GCGC	3 cut(s)	358, 857, 947
HinP1I	GCGC	3 cut(s)	358, 857, 947
HindIII	AAGCTT	2 cut(s)	668, 1046
HinfI	GANTC	9 cut(s)	811, 892, 967, 1036, 1319, 1538, 1697, 1815, 1821
HpaII	CCGG	5 cut(s)	350, 373, 451, 493, 746
Hpy188III	TCNNGA	8 cut(s)	178, 334, 457, 896, 1352, 1562, 1669, 1725
Hpy99I	CGWCG	1 cut(s)	443
HpyAV	CCTTC	8 cut(s)	316, 628, 688, 979, 1075, 1153, 1748, 1766
HpyCH4III	ACNGT	6 cut(s)	916, 1057, 1334, 1535, 1793, 1810
HpyCH4IV	ACGT	3 cut(s)	327, 932, 1524
HpyCH4V	TGCA	6 cut(s)	1000, 1416, 1491, 1529, 1640, 1733
HpyF10VI	GCNNNNNNNGC	9 cut(s)	153, 279, 412, 425, 460, 656, 799, 856, 1861
HpyF3I	CTNAG	6 cut(s)	455, 573, 671, 708, 1064, 1134
HpySE526I	ACGT	3 cut(s)	327, 932, 1524
Hsp92I	GRCGYC	1 cut(s)	441
Hsp92II	CATG	7 cut(s)	172, 265, 506, 844, 1500, 1588, 1672
HspAI	GCGC	3 cut(s)	358, 857, 947
KroI	GCCGGC	1 cut(s)	372
KroNI	GCCGGC	1 cut(s)	374
Ksp22I	TGATCA	1 cut(s)	1389
Kzo9I	GATC	6 cut(s)	186, 489, 1389, 1515, 1884, 1910
LguI	GCTCTTC	1 cut(s)	1929
Lsp1109I	GCAGC	4 cut(s)	301, 1012, 1400, 1465
LweI	GCATC	6 cut(s)	583, 694, 1012, 1420, 1449, 1666
MaeI	CTAG	1 cut(s)	1029
MaeII	ACGT	3 cut(s)	327, 932, 1524
MaeIII	GTNAC	4 cut(s)	445, 531, 1187, 1268
MalI	GATC	6 cut(s)	188, 491, 1391, 1517, 1886, 1912
MboI	GATC	6 cut(s)	186, 489, 1389, 1515, 1884, 1910
MflI	RGATCY	2 cut(s)	186, 489
MhlI	GDGCHC	3 cut(s)	348, 421, 1154
MlsI	TGGCCA	1 cut(s)	1839
MluCI	AATT	7 cut(s)	203, 524, 736, 907, 1178, 1576, 1880
MluNI	TGGCCA	1 cut(s)	1839
MlyI	GAGTC	2 cut(s)	820, 1313
MmeI	TCCRAC	4 cut(s)	467, 915, 1207, 1792
Mox20I	TGGCCA	1 cut(s)	1839
MroNI	GCCGGC	1 cut(s)	372
MroXI	GAANNNNTTC	1 cut(s)	8
MscI	TGGCCA	1 cut(s)	1839
MseI	TTAA	3 cut(s)	753, 1548, 1872
MslI	CAYNNNNRTG	1 cut(s)	1589
Msp20I	TGGCCA	1 cut(s)	1839
MspA1I	CMGCKG	1 cut(s)	1478
MspI	CCGG	5 cut(s)	350, 373, 451, 493, 746
MspR9I	CCNGG	7 cut(s)	209, 350, 422, 431, 451, 517, 747
Mva1269I	GAATGC	2 cut(s)	1252, 1306
MvaI	CCWGG	4 cut(s)	209, 422, 431, 517
MvnI	CGCG	4 cut(s)	141, 147, 360, 1682
MwoI	GCNNNNNNNGC	9 cut(s)	153, 279, 412, 425, 460, 656, 799, 856, 1861
NaeI	GCCGGC	1 cut(s)	374
NciI	CCSGG	3 cut(s)	350, 451, 747
NcoI	CCATGG	1 cut(s)	1496
NdeII	GATC	6 cut(s)	186, 489, 1389, 1515, 1884, 1910
NgoMIV	GCCGGC	1 cut(s)	372
NlaIII	CATG	7 cut(s)	172, 265, 506, 844, 1500, 1588, 1672
NlaIV	GGNNCC	4 cut(s)	419, 435, 491, 639
NmeAIII	GCCGAG	1 cut(s)	258
NmuCI	GTSAC	1 cut(s)	445
NsbI	TGCGCA	1 cut(s)	948
NspI	RCATGY	3 cut(s)	265, 506, 1588
NspV	TTCGAA	1 cut(s)	546
PaeR7I	CTCGAG	1 cut(s)	497
PagI	TCATGA	1 cut(s)	1668
PciSI	GCTCTTC	1 cut(s)	1929
PcsI	WCGNNNNNNNCGW	2 cut(s)	339, 534
PctI	GAATGC	2 cut(s)	1252, 1306
PdiI	GCCGGC	1 cut(s)	374
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	7 cut(s)	892, 967, 1036, 1538, 1697, 1815, 1821
Pfl23II	CGTACG	1 cut(s)	1683
PflFI	GACNNNGTC	1 cut(s)	140
PflMI	CCANNNNNTGG	1 cut(s)	1811
PkrI	GCNGC	9 cut(s)	275, 291, 301, 304, 427, 1002, 1415, 1480, 1681
PleI	GAGTC	2 cut(s)	819, 1313
PpsI	GAGTC	2 cut(s)	819, 1313
PpuMI	RGGWCCY	2 cut(s)	433, 637
Psp5II	RGGWCCY	2 cut(s)	433, 637
Psp6I	CCWGG	4 cut(s)	207, 420, 429, 515
PspEI	GGTNACC	1 cut(s)	531
PspFI	CCCAGC	1 cut(s)	225
PspGI	CCWGG	4 cut(s)	207, 420, 429, 515
PspLI	CGTACG	1 cut(s)	1683
PspN4I	GGNNCC	4 cut(s)	419, 435, 491, 639
PspOMI	GGGCCC	1 cut(s)	417
PspPI	GGNCC	8 cut(s)	136, 211, 417, 418, 427, 433, 637, 1940
PspPPI	RGGWCCY	2 cut(s)	433, 637
PspXI	VCTCGAGB	1 cut(s)	497
PstI	CTGCAG	1 cut(s)	1002
PsuI	RGATCY	2 cut(s)	186, 489
PsyI	GACNNNGTC	1 cut(s)	140
PvuII	CAGCTG	1 cut(s)	1478
RsaI	GTAC	5 cut(s)	569, 617, 1502, 1685, 1750
RsaNI	GTAC	5 cut(s)	568, 616, 1501, 1684, 1749
RseI	CAYNNNNRTG	1 cut(s)	1589
SapI	GCTCTTC	1 cut(s)	1929
SaqAI	TTAA	3 cut(s)	753, 1548, 1872
SatI	GCNGC	9 cut(s)	274, 290, 300, 303, 426, 1001, 1414, 1479, 1680
Sau3AI	GATC	6 cut(s)	186, 489, 1389, 1515, 1884, 1910
Sau96I	GGNCC	8 cut(s)	136, 211, 417, 418, 427, 433, 637, 1940
SchI	GAGTC	2 cut(s)	820, 1313
ScrFI	CCNGG	7 cut(s)	209, 350, 422, 431, 451, 517, 747
SduI	GDGCHC	3 cut(s)	348, 421, 1154
SfaNI	GCATC	6 cut(s)	583, 694, 1012, 1420, 1449, 1666
SfcI	CTRYAG	3 cut(s)	555, 660, 998
SfiI	GGCCNNNNNGGCC	1 cut(s)	425
Sfr274I	CTCGAG	1 cut(s)	497
SfuI	TTCGAA	1 cut(s)	546
SinI	GGWCC	3 cut(s)	136, 433, 637
SlaI	CTCGAG	1 cut(s)	497
SmiMI	CAYNNNNRTG	1 cut(s)	1589
SmlI	CTYRAG	4 cut(s)	314, 497, 563, 851
SmoI	CTYRAG	4 cut(s)	314, 497, 563, 851
Sse9I	AATT	7 cut(s)	203, 524, 736, 907, 1178, 1576, 1880
SspMI	CTAG	1 cut(s)	1029
StyD4I	CCNGG	7 cut(s)	207, 348, 420, 429, 449, 515, 745
StyI	CCWWGG	2 cut(s)	1154, 1496
TaaI	ACNGT	6 cut(s)	916, 1057, 1334, 1535, 1793, 1810
TaiI	ACGT	3 cut(s)	330, 935, 1527
TaqI	TCGA	7 cut(s)	177, 258, 333, 402, 498, 546, 1025
TasI	AATT	7 cut(s)	203, 524, 736, 907, 1178, 1576, 1880
TatI	WGTACW	1 cut(s)	615
TauI	GCSGC	5 cut(s)	276, 302, 305, 428, 1682
TfiI	GAWTC	7 cut(s)	892, 967, 1036, 1538, 1697, 1815, 1821
Tru1I	TTAA	3 cut(s)	753, 1548, 1872
Tru9I	TTAA	3 cut(s)	753, 1548, 1872
TscAI	CASTG	4 cut(s)	1441, 1470, 1540, 1647
TseFI	GTSAC	1 cut(s)	445
TseI	GCWGC	4 cut(s)	289, 1000, 1413, 1478
Tsp45I	GTSAC	1 cut(s)	445
TspDTI	ATGAA	7 cut(s)	17, 537, 714, 718, 980, 1040, 1371
TspGWI	ACGGA	2 cut(s)	1535, 1625
TspRI	CASTG	4 cut(s)	1441, 1470, 1540, 1647
Tth111I	GACNNNGTC	1 cut(s)	140
Van91I	CCANNNNNTGG	1 cut(s)	1811
VpaK11BI	GGWCC	3 cut(s)	136, 433, 637
XapI	RAATTY	4 cut(s)	203, 524, 736, 907
XceI	RCATGY	3 cut(s)	265, 506, 1588
XhoI	CTCGAG	1 cut(s)	497
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	1 cut(s)	1029

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.