Rh5DG238900

Plant organelle RNA recognition domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0009357
Physical Location & Seq
Forward (+)
27352193 .. 27353443
1251 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG238900.1

Sequence Viewer

Length: 1251 bp
ATGGACCGCGTCCGCGACCACGGCTACGACAACTACATGGAAATCGAGAAGAAGATCCGCAAAGTCCTCAAATTCCAGGCCCTCATTCTCTCCCATCCCCACCAGATCATCCAAGCCTCTCGCCTCGACATGCTCGCCCGCCGCCTCGGCTTCAAGCAGCACGAGGCCGCCGCCTTCGTCCTCAAGTTCCCTCACGTCTTCGAGATTTACGAGCACCCGGTTCAGCGGGTCCTCTATTGCCGGCTGACCCGAAAAGCCCACCTCCAAATCGAGCAGGAGAAGCGGGCCCTGGCGGCCCAGGTCCCCGACGCCGTGACCCGGCTCAGGAAGCTGGTGATGATGTCCAATACGGGTCGGATCCGGCTCGAGCATGTTCGGATTGCCAGGTATGAATTCGGGCTACCCGATGATTTCGAATACTCGGTAGTTCTCAAGTACCCTGAGTATTTCAGATTGTTTGATGCTGATGAGAGTAGGAGTAAGTACATTGAGGTAGTTGAGAAGGACCCAAGTTTAGCTGTTTGTGCTATAGAGAAGCTTAGGGAGAGAGAGTATAGGGATAAGGGGGTTGATGCTGAGGATATAAGGTTTTCATTCATTGTGAATTTTCCGCCGGGGTTTAAGATAGGGAAGTATTATAGGATTGCTGTGTGGAAATGGCAGAGAGTGCCGTATTGGAGTCCTTATGAGGATGTTTCAGGGTATGACATGAGGTCGCTTGAGGCGCAGAAGAGGATGGAGAAGAGGGCTGTGGCGGTGATTCATGAGCTGTTGAATTTGACCGTGGAGAAGAAGATTACGTTGGAGAGGATTGCGCATTTTAGAATGGCGATGAATCTGCCGAAGAAGTTGAAGGAGTTTCTTCTGCAGCATCAGGGGATTTTCTACATTTCGACTAGAGGGAATCACGGGAAGCTTCATACGGTGTTTCTTAGGGAGGCTTATAGGAAGGGTGAGTTGGTAGAGCCGAATGATTTGTATTTGGCGAGAAGAAAGTTGGCTGAGTTGGTGTTGATGAGCCCAAGGAAGGCGAAAATGGATAGTGAATTGGTTAGTTACCATAGAGACTGGGGAGATGATGAGAGGGGGTTCGTTGGAAGAGAATGTGTTGAGAATGCTTTTGAAGATTTTGGGGGTTGCAATGATGATAGGCAGAGGAGGGACTCGAATGCGAGTGATGATTATGACTCCGATACAGACGATGATTCTGATAAAACTCTGGATGAAAAGGATGTCTGTGTAACGGATTGA

Protein Analysis

416

Amino Acids

49.2

Weight (kDa)

8.1

Isoelectric Point (pI)

36.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PORR PF11955 4 - 341 7.9e-113 Plant organelle RNA recognition domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 816
AccII CGCG 2 cut(s) 9, 15
AclWI GGATC 3 cut(s) 49, 352, 365
AcsI RAATTY 4 cut(s) 71, 392, 604, 775
AcyI GRCGYC 1 cut(s) 309
AfaI GTAC 2 cut(s) 437, 485
AfiI CCNNNNNNNGG 3 cut(s) 318, 324, 1027
AgsI TTSAA 4 cut(s) 154, 775, 853, 1124
AhdI GACNNNNNGTC 1 cut(s) 712
AjiI CACGTC 1 cut(s) 196
AjnI CCWGG 4 cut(s) 75, 288, 297, 383
AjuI GAANNNNNNNTTGG 4 cut(s) 785, 817, 941, 973
AluBI AGCT 5 cut(s) 331, 518, 538, 769, 916
AluI AGCT 5 cut(s) 331, 518, 538, 769, 916
Alw21I GWGCWC 1 cut(s) 216
Alw26I GTCTC 1 cut(s) 1059
AlwI GGATC 3 cut(s) 49, 352, 365
Ama87I CYCGRG 1 cut(s) 365
AoxI GGCC 4 cut(s) 78, 165, 285, 294
ApaI GGGCCC 1 cut(s) 289
ApeKI GCWGC 2 cut(s) 157, 868
ApoI RAATTY 4 cut(s) 71, 392, 604, 775
AspLEI GCGC 2 cut(s) 727, 817
AspS9I GGNCC 8 cut(s) 4, 79, 229, 285, 286, 295, 301, 505
AsuC2I CCSGG 3 cut(s) 218, 319, 615
AsuHPI GGTGA 3 cut(s) 346, 769, 965
AsuII TTCGAA 1 cut(s) 414
AvaI CYCGRG 1 cut(s) 365
AvaII GGWCC 4 cut(s) 4, 229, 301, 505
BaeGI GKGCMC 1 cut(s) 289
BamHI GGATCC 1 cut(s) 357
BanII GRGCYC 2 cut(s) 289, 1022
BauI CACGAG 1 cut(s) 161
BbsI GAAGAC 1 cut(s) 190
Bbv12I GWGCWC 1 cut(s) 216
BbvCI CCTCAGC 1 cut(s) 576
BbvI GCAGC 2 cut(s) 169, 880
BccI CCATC 2 cut(s) 102, 730
BceAI ACGGC 3 cut(s) 37, 296, 655
BcgI CGANNNNNNTGC 2 cut(s) 820, 854
BciT130I CCWGG 4 cut(s) 77, 290, 299, 385
BcnI CCSGG 3 cut(s) 218, 319, 615
BcoDI GTCTC 1 cut(s) 1059
BfaI CTAG 1 cut(s) 897
BfmI CTRYAG 2 cut(s) 528, 866
BglI GCCNNNNNGGC 2 cut(s) 147, 293
BisI GCNGC 6 cut(s) 142, 158, 168, 171, 294, 869
BlsI GCNGC 6 cut(s) 143, 159, 169, 172, 295, 870
Bme1390I CCNGG 7 cut(s) 77, 218, 290, 299, 319, 385, 615
Bme18I GGWCC 4 cut(s) 4, 229, 301, 505
BmeRI GACNNNNNGTC 1 cut(s) 712
BmeT110I CYCGRG 1 cut(s) 365
BmgBI CACGTC 1 cut(s) 196
BmgT120I GGNCC 8 cut(s) 4, 79, 229, 285, 286, 295, 301, 505
BmiI GGNNCC 5 cut(s) 230, 287, 303, 359, 507
BmrFI CCNGG 7 cut(s) 77, 218, 290, 299, 319, 385, 615
BmrI ACTGGG 1 cut(s) 1078
BmsI GCATC 3 cut(s) 451, 562, 880
BmuI ACTGGG 1 cut(s) 1078
BpiI GAAGAC 1 cut(s) 190
Bpu10I CCTNAGC 3 cut(s) 323, 539, 576
Bpu14I TTCGAA 1 cut(s) 414
BpuEI CTTGAG 3 cut(s) 167, 416, 740
BpuMI CCSGG 3 cut(s) 218, 319, 615
BsaHI GRCGYC 1 cut(s) 309
BsaJI CCNNGG 7 cut(s) 19, 145, 288, 297, 614, 783, 1022
BsaXI ACNNNNNCTCC 2 cut(s) 536, 566
Bsc4I CCNNNNNNNGG 3 cut(s) 318, 324, 1027
Bse118I RCCGGY 1 cut(s) 240
Bse1I ACTGG 1 cut(s) 1073
Bse3DI GCAATG 1 cut(s) 1147
BseBI CCWGG 4 cut(s) 77, 290, 299, 385
BseDI CCNNGG 7 cut(s) 19, 145, 288, 297, 614, 783, 1022
BseGI GGATG 6 cut(s) 94, 108, 697, 741, 1228, 1237
BseLI CCNNNNNNNGG 3 cut(s) 318, 324, 1027
BseMI GCAATG 1 cut(s) 1147
BseMII CTCAG 4 cut(s) 337, 432, 567, 993
BseNI ACTGG 1 cut(s) 1073
BseRI GAGGAG 1 cut(s) 1171
BseSI GKGCMC 1 cut(s) 289
BseXI GCAGC 2 cut(s) 169, 880
Bsh1236I CGCG 2 cut(s) 9, 15
BshFI GGCC 4 cut(s) 80, 167, 287, 296
BsiHKAI GWGCWC 1 cut(s) 216
BsiHKCI CYCGRG 1 cut(s) 365
BsiSI CCGG 5 cut(s) 218, 241, 319, 361, 614
BslFI GGGAC 2 cut(s) 287, 1175
BslI CCNNNNNNNGG 3 cut(s) 318, 324, 1027
BsmAI GTCTC 1 cut(s) 1059
BsmFI GGGAC 2 cut(s) 287, 1175
BsmI GAATGC 2 cut(s) 1120, 1174
BsnI GGCC 4 cut(s) 80, 167, 287, 296
BsoBI CYCGRG 1 cut(s) 365
Bsp119I TTCGAA 1 cut(s) 414
Bsp120I GGGCCC 1 cut(s) 285
Bsp1286I GDGCHC 3 cut(s) 216, 289, 1022
Bsp143I GATC 3 cut(s) 54, 105, 357
BspANI GGCC 4 cut(s) 80, 167, 287, 296
BspCNI CTCAG 4 cut(s) 336, 433, 568, 994
BspFNI CGCG 2 cut(s) 9, 15
BspHI TCATGA 1 cut(s) 763
BspLI GGNNCC 5 cut(s) 230, 287, 303, 359, 507
BspMAI CTGCAG 1 cut(s) 870
BspPI GGATC 3 cut(s) 49, 352, 365
BspT104I TTCGAA 1 cut(s) 414
BsrDI GCAATG 1 cut(s) 1147
BsrFI RCCGGY 1 cut(s) 240
BsrI ACTGG 1 cut(s) 1073
BssAI RCCGGY 1 cut(s) 240
BssECI CCNNGG 7 cut(s) 19, 145, 288, 297, 614, 783, 1022
BssMI GATC 3 cut(s) 54, 105, 357
BssNI GRCGYC 1 cut(s) 309
BssSI CACGAG 1 cut(s) 161
BssT1I CCWWGG 1 cut(s) 1022
Bst2BI CACGAG 1 cut(s) 161
Bst2UI CCWGG 4 cut(s) 77, 290, 299, 385
Bst4CI ACNGT 2 cut(s) 784, 925
Bst6I CTCTTC 3 cut(s) 725, 737, 1093
BstACI GRCGYC 1 cut(s) 309
BstAPI GCANNNNNTGC 1 cut(s) 667
BstBI TTCGAA 1 cut(s) 414
BstC8I GCNNGC 4 cut(s) 135, 139, 242, 285
BstDEI CTNAG 6 cut(s) 323, 441, 539, 576, 932, 1002
BstDSI CCRYGG 2 cut(s) 19, 783
BstF5I GGATG 6 cut(s) 94, 108, 697, 741, 1228, 1237
BstFNI CGCG 2 cut(s) 9, 15
BstHHI GCGC 2 cut(s) 727, 817
BstKTI GATC 3 cut(s) 57, 108, 360
BstMAI GTCTC 1 cut(s) 1059
BstMBI GATC 3 cut(s) 54, 105, 357
BstMWI GCNNNNNNNGC 8 cut(s) 21, 147, 280, 293, 328, 524, 667, 724
BstNI CCWGG 4 cut(s) 77, 290, 299, 385
BstNSI RCATGY 2 cut(s) 133, 374
BstSCI CCNGG 7 cut(s) 75, 216, 288, 297, 317, 383, 613
BstSFI CTRYAG 2 cut(s) 528, 866
BstSLI GKGCMC 1 cut(s) 289
BstUI CGCG 2 cut(s) 9, 15
BstV1I GCAGC 2 cut(s) 169, 880
BstV2I GAAGAC 1 cut(s) 190
BstX2I RGATCY 2 cut(s) 54, 357
BstYI RGATCY 2 cut(s) 54, 357
BsuRI GGCC 4 cut(s) 80, 167, 287, 296
BtgI CCRYGG 2 cut(s) 19, 783
BtgZI GCGATG 1 cut(s) 845
BtrI CACGTC 1 cut(s) 196
BtsCI GGATG 6 cut(s) 94, 108, 697, 741, 1228, 1237
Cac8I GCNNGC 4 cut(s) 135, 139, 242, 285
CciI TCATGA 1 cut(s) 763
CfoI GCGC 2 cut(s) 727, 817
Cfr10I RCCGGY 1 cut(s) 240
Cfr13I GGNCC 8 cut(s) 4, 79, 229, 285, 286, 295, 301, 505
CseI GACGC 1 cut(s) 317
Csp6I GTAC 2 cut(s) 436, 484
CviAII CATG 5 cut(s) 37, 130, 371, 709, 764
CviQI GTAC 2 cut(s) 436, 484
DdeI CTNAG 6 cut(s) 323, 441, 539, 576, 932, 1002
DpnI GATC 3 cut(s) 56, 107, 359
DpnII GATC 3 cut(s) 54, 105, 357
DriI GACNNNNNGTC 1 cut(s) 712
Eam1104I CTCTTC 3 cut(s) 725, 737, 1093
Eam1105I GACNNNNNGTC 1 cut(s) 712
EarI CTCTTC 3 cut(s) 725, 737, 1093
EciI GGCGGA 1 cut(s) 600
Eco130I CCWWGG 1 cut(s) 1022
Eco24I GRGCYC 2 cut(s) 289, 1022
Eco47I GGWCC 4 cut(s) 4, 229, 301, 505
Eco88I CYCGRG 1 cut(s) 365
EcoO109I RGGNCCY 5 cut(s) 79, 229, 286, 301, 505
EcoRI GAATTC 1 cut(s) 392
EcoRII CCWGG 4 cut(s) 75, 288, 297, 383
EcoT14I CCWWGG 1 cut(s) 1022
EcoT38I GRGCYC 2 cut(s) 289, 1022
ErhI CCWWGG 1 cut(s) 1022
FaeI CATG 5 cut(s) 40, 133, 374, 712, 767
FaqI GGGAC 2 cut(s) 287, 1175
FatI CATG 5 cut(s) 36, 129, 370, 708, 763
FauI CCCGC 3 cut(s) 146, 219, 276
Fnu4HI GCNGC 6 cut(s) 142, 158, 168, 171, 294, 869
FokI GGATG 6 cut(s) 81, 95, 704, 748, 1235, 1244
FriOI GRGCYC 2 cut(s) 289, 1022
Fsp4HI GCNGC 6 cut(s) 142, 158, 168, 171, 294, 869
FspBI CTAG 1 cut(s) 897
FspI TGCGCA 1 cut(s) 816
GlaI GCGC 2 cut(s) 726, 816
GluI GCNGC 6 cut(s) 142, 158, 168, 171, 294, 869
HaeIII GGCC 4 cut(s) 80, 167, 287, 296
HapII CCGG 5 cut(s) 218, 241, 319, 361, 614
HgaI GACGC 1 cut(s) 317
HhaI GCGC 2 cut(s) 727, 817
Hin1I GRCGYC 1 cut(s) 309
Hin1II CATG 5 cut(s) 40, 133, 374, 712, 767
Hin6I GCGC 2 cut(s) 725, 815
HinP1I GCGC 2 cut(s) 725, 815
HindIII AAGCTT 2 cut(s) 536, 914
HinfI GANTC 7 cut(s) 679, 760, 835, 904, 1163, 1187, 1205
HpaII CCGG 5 cut(s) 218, 241, 319, 361, 614
HphI GGTGA 3 cut(s) 346, 769, 965
Hpy188I TCNGA 5 cut(s) 357, 378, 452, 1192, 1210
Hpy188III TCNNGA 5 cut(s) 46, 202, 325, 764, 1220
Hpy99I CGWCG 1 cut(s) 311
HpyAV CCTTC 5 cut(s) 184, 496, 847, 943, 1021
HpyCH4III ACNGT 2 cut(s) 784, 925
HpyCH4IV ACGT 2 cut(s) 195, 800
HpyCH4V TGCA 2 cut(s) 868, 1140
HpyF10VI GCNNNNNNNGC 8 cut(s) 21, 147, 280, 293, 328, 524, 667, 724
HpyF3I CTNAG 6 cut(s) 323, 441, 539, 576, 932, 1002
HpySE526I ACGT 2 cut(s) 195, 800
Hsp92I GRCGYC 1 cut(s) 309
Hsp92II CATG 5 cut(s) 40, 133, 374, 712, 767
HspAI GCGC 2 cut(s) 725, 815
KroI GCCGGC 1 cut(s) 240
KroNI GCCGGC 1 cut(s) 242
Kzo9I GATC 3 cut(s) 54, 105, 357
Lsp1109I GCAGC 2 cut(s) 169, 880
LweI GCATC 3 cut(s) 451, 562, 880
MaeI CTAG 1 cut(s) 897
MaeII ACGT 2 cut(s) 195, 800
MaeIII GTNAC 3 cut(s) 313, 1055, 1240
MalI GATC 3 cut(s) 56, 107, 359
MboI GATC 3 cut(s) 54, 105, 357
MflI RGATCY 2 cut(s) 54, 357
MhlI GDGCHC 3 cut(s) 216, 289, 1022
MluCI AATT 5 cut(s) 71, 392, 604, 775, 1046
MlyI GAGTC 3 cut(s) 688, 1157, 1181
MmeI TCCRAC 3 cut(s) 335, 783, 1075
MroNI GCCGGC 1 cut(s) 240
MseI TTAA 1 cut(s) 621
MspA1I CMGCKG 1 cut(s) 226
MspI CCGG 5 cut(s) 218, 241, 319, 361, 614
MspR9I CCNGG 7 cut(s) 77, 218, 290, 299, 319, 385, 615
Mva1269I GAATGC 2 cut(s) 1120, 1174
MvaI CCWGG 4 cut(s) 77, 290, 299, 385
MvnI CGCG 2 cut(s) 9, 15
MwoI GCNNNNNNNGC 8 cut(s) 21, 147, 280, 293, 328, 524, 667, 724
NaeI GCCGGC 1 cut(s) 242
NciI CCSGG 3 cut(s) 218, 319, 615
NdeII GATC 3 cut(s) 54, 105, 357
NgoMIV GCCGGC 1 cut(s) 240
NlaIII CATG 5 cut(s) 40, 133, 374, 712, 767
NlaIV GGNNCC 5 cut(s) 230, 287, 303, 359, 507
NmeAIII GCCGAG 1 cut(s) 126
NmuCI GTSAC 1 cut(s) 313
NsbI TGCGCA 1 cut(s) 816
NspI RCATGY 2 cut(s) 133, 374
NspV TTCGAA 1 cut(s) 414
PaeR7I CTCGAG 1 cut(s) 365
PagI TCATGA 1 cut(s) 763
PcsI WCGNNNNNNNCGW 2 cut(s) 207, 402
PctI GAATGC 2 cut(s) 1120, 1174
PdiI GCCGGC 1 cut(s) 242
PfeI GAWTC 4 cut(s) 760, 835, 904, 1205
PflFI GACNNNGTC 1 cut(s) 8
PkrI GCNGC 6 cut(s) 143, 159, 169, 172, 295, 870
PleI GAGTC 3 cut(s) 687, 1157, 1181
PpsI GAGTC 3 cut(s) 687, 1157, 1181
PpuMI RGGWCCY 3 cut(s) 229, 301, 505
Psp5II RGGWCCY 3 cut(s) 229, 301, 505
Psp6I CCWGG 4 cut(s) 75, 288, 297, 383
PspGI CCWGG 4 cut(s) 75, 288, 297, 383
PspN4I GGNNCC 5 cut(s) 230, 287, 303, 359, 507
PspOMI GGGCCC 1 cut(s) 285
PspPI GGNCC 8 cut(s) 4, 79, 229, 285, 286, 295, 301, 505
PspPPI RGGWCCY 3 cut(s) 229, 301, 505
PspXI VCTCGAGB 1 cut(s) 365
PstI CTGCAG 1 cut(s) 870
PsuI RGATCY 2 cut(s) 54, 357
PsyI GACNNNGTC 1 cut(s) 8
RsaI GTAC 2 cut(s) 437, 485
RsaNI GTAC 2 cut(s) 436, 484
SaqAI TTAA 1 cut(s) 621
SatI GCNGC 6 cut(s) 142, 158, 168, 171, 294, 869
Sau3AI GATC 3 cut(s) 54, 105, 357
Sau96I GGNCC 8 cut(s) 4, 79, 229, 285, 286, 295, 301, 505
SchI GAGTC 3 cut(s) 688, 1157, 1181
ScrFI CCNGG 7 cut(s) 77, 218, 290, 299, 319, 385, 615
SduI GDGCHC 3 cut(s) 216, 289, 1022
SfaNI GCATC 3 cut(s) 451, 562, 880
SfcI CTRYAG 2 cut(s) 528, 866
SfiI GGCCNNNNNGGCC 1 cut(s) 293
Sfr274I CTCGAG 1 cut(s) 365
SfuI TTCGAA 1 cut(s) 414
SinI GGWCC 4 cut(s) 4, 229, 301, 505
SlaI CTCGAG 1 cut(s) 365
SmlI CTYRAG 4 cut(s) 182, 365, 431, 719
SmoI CTYRAG 4 cut(s) 182, 365, 431, 719
Sse9I AATT 5 cut(s) 71, 392, 604, 775, 1046
SspMI CTAG 1 cut(s) 897
StyD4I CCNGG 7 cut(s) 75, 216, 288, 297, 317, 383, 613
StyI CCWWGG 1 cut(s) 1022
TaaI ACNGT 2 cut(s) 784, 925
TaiI ACGT 2 cut(s) 198, 803
TaqI TCGA 8 cut(s) 45, 126, 201, 270, 366, 414, 893, 1166
TasI AATT 5 cut(s) 71, 392, 604, 775, 1046
TatI WGTACW 1 cut(s) 483
TauI GCSGC 4 cut(s) 144, 170, 173, 296
TfiI GAWTC 4 cut(s) 760, 835, 904, 1205
Tru1I TTAA 1 cut(s) 621
Tru9I TTAA 1 cut(s) 621
TseFI GTSAC 1 cut(s) 313
TseI GCWGC 2 cut(s) 157, 868
Tsp45I GTSAC 1 cut(s) 313
TspDTI ATGAA 7 cut(s) 405, 582, 586, 752, 848, 908, 1239
Tth111I GACNNNGTC 1 cut(s) 8
VpaK11BI GGWCC 4 cut(s) 4, 229, 301, 505
XapI RAATTY 4 cut(s) 71, 392, 604, 775
XceI RCATGY 2 cut(s) 133, 374
XhoI CTCGAG 1 cut(s) 365
XspI CTAG 1 cut(s) 897
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.