Prupe.2G291500_v2.0.a1

Plant organelle RNA recognition domain

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Forward (+)
28500829 .. 28503604
2776 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G291500.1

Sequence Viewer

Length: 1347 bp
ATGCACATATTTTTAGCTTATTCGTCCAATTTCTTCAAAACCAGATCCAAAACTCTGAAACCCATCACATTCATCCTCTTGAATCTCACTTCCACAAGACCCATGTCCCAGTCCACCTCCATACCCAAGAAGCAAGAAAGAGTCCGAGACCATGGCTACGACAATTACATGGAGGTTGAGAAGAAGACCCGCAAGGTCCACAAATTCCAGGACCTCATTCTCTCCCAGCCTAACCAAGTCATCCAAATCTCCCGCCTCGACCTCCTCGCTCGCCGCCTCGGTTTCAAACAGAACGAAGCTGGTGCTTTCGTCCTCAAATTCCCTCATGTCTTTGAGATTTACGAGCACCCAGTTCAGAGAATCCTTTATTGTCGCTTAACCCGAAAAGCCCACCTCCAGATTGAGCAGGAAAAGAAGGCTCTCATCGACCAAATCCCTGACGCCGTGACCTGTCTCAGAAAACTTTTGATGATGTCTAACACCGGCCGGCTCCGCCTCGAGCATGTTCGGATTGCAAGGGCTGAATTTGGGCTGCCTGATGATTTCGAATACTCGGTAATTATCAAGTACCCTCAGTATTTTAGACTGTTCGATGCGCAGGAAACTAGGAATAAGTACATTGAGGTTGTTGAGAAAGACCCGAGTTTATCTGTGTGTGCTATAGAGAAGCTTAGGGAGATAGAGTATAGGGAAAAAGGAATTGATGCTGAGGATATAAGGTTCTCATTCATTGTGAATTTTCCACCCGGGTTTAAGATAGGAAAGTATTATAGGATTGCAGTGTGGAAATGGCAGAGAGTTCCTTATTGGTCACCGTATGAGGATGTTTCCGGTTATGACTTGAGGTCACTTGAGGCTCAGAAGAGAATGGAGAAGAGAGCAGTTGCTGTGATTCATGAGTTGTTGTCGTTAACGGTGGAGAAGAAGATTACATTGGAGAGGATTGCCCACTTTAGGATGGCTATGAATTTGCCAAATAAGTTGAAAGAATTTCTTCTTCAGCACCAGGGTATTTTCTATATTTCAACTAGAGGAAATCATGGGAAGCTTCATACAGTGTTTCTTAGGGAGGCTTATAAGAAGGGTGAGTTGATAGAGCCGAATGATTTGTATTTGGCGAGAAGAAAATTGGCTGAGTTGGTTTTAATAAGCCCGAGGAAGGCAAAAGTGGATAGGGAATTGGTTAGTTACCACAGAGATTGGGAGGATGATGAGAGAGGGCATATTAGAAGAGACCATGTTGAGAATTCTTTTGAAGATTTTGGAGGCAGGAACACCGTTGGGCAGGATAGGGGCGTGGATGATGATATGAACTCAGATATGGGTGGTGATTATGACTCCGATTGA

Protein Analysis

449

Amino Acids

52.92

Weight (kDa)

9.23

Isoelectric Point (pI)

43.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1077
Acc16I TGCGCA 1 cut(s) 597
AciI CCGC 4 cut(s) 190, 253, 274, 493
AclWI GGATC 1 cut(s) 39
AcoI YGGCCR 1 cut(s) 484
AcsI RAATTY 7 cut(s) 203, 317, 524, 736, 967, 989, 1246
AcuI CTGAAG 1 cut(s) 983
AcyI GRCGYC 1 cut(s) 441
AfaI GTAC 2 cut(s) 569, 617
AfiI CCNNNNNNNGG 2 cut(s) 954, 1159
AgsI TTSAA 6 cut(s) 37, 82, 286, 985, 1026, 1256
AhdI GACNNNNNGTC 1 cut(s) 844
AjnI CCWGG 2 cut(s) 207, 1005
AjuI GAANNNNNNNTTGG 2 cut(s) 917, 949
AloI GAACNNNNNNTCC 2 cut(s) 704, 736
AluBI AGCT 4 cut(s) 17, 299, 670, 1048
AluI AGCT 4 cut(s) 17, 299, 670, 1048
Alw21I GWGCWC 1 cut(s) 348
Alw26I GTCTC 3 cut(s) 141, 458, 1227
AlwI GGATC 1 cut(s) 39
AlwNI CAGNNNCTG 1 cut(s) 887
Ama87I CYCGRG 4 cut(s) 497, 640, 746, 1153
AoxI GGCC 1 cut(s) 484
ApeKI GCWGC 1 cut(s) 532
ApoI RAATTY 7 cut(s) 203, 317, 524, 736, 967, 989, 1246
Asp700I GAANNNNTTC 1 cut(s) 993
AspLEI GCGC 1 cut(s) 598
AspS9I GGNCC 2 cut(s) 196, 211
AsuC2I CCSGG 2 cut(s) 747, 748
AsuHPI GGTGA 3 cut(s) 804, 1097, 1340
AsuII TTCGAA 1 cut(s) 546
AvaI CYCGRG 4 cut(s) 497, 640, 746, 1153
AvaII GGWCC 2 cut(s) 196, 211
BbsI GAAGAC 1 cut(s) 191
Bbv12I GWGCWC 1 cut(s) 348
BbvCI CCTCAGC 1 cut(s) 708
BbvI GCAGC 1 cut(s) 519
BccI CCATC 2 cut(s) 71, 952
BceAI ACGGC 1 cut(s) 428
BcgI CGANNNNNNTGC 2 cut(s) 284, 318
BciT130I CCWGG 2 cut(s) 209, 1007
BcnI CCSGG 2 cut(s) 747, 748
BcoDI GTCTC 3 cut(s) 141, 458, 1227
BfaI CTAG 2 cut(s) 606, 1029
BfmI CTRYAG 1 cut(s) 660
BisI GCNGC 2 cut(s) 274, 533
BlsI GCNGC 2 cut(s) 275, 534
Bme1390I CCNGG 4 cut(s) 209, 747, 748, 1007
Bme18I GGWCC 2 cut(s) 196, 211
BmeRI GACNNNNNGTC 1 cut(s) 844
BmeT110I CYCGRG 4 cut(s) 497, 640, 746, 1153
BmgT120I GGNCC 2 cut(s) 196, 211
BmiI GGNNCC 1 cut(s) 491
BmrFI CCNGG 4 cut(s) 209, 747, 748, 1007
BmrI ACTGGG 2 cut(s) 103, 344
BmsI GCATC 2 cut(s) 583, 694
BmuI ACTGGG 2 cut(s) 103, 344
BoxI GACNNNNGTC 1 cut(s) 103
BpiI GAAGAC 1 cut(s) 191
BpmI CTGGAG 1 cut(s) 380
Bpu10I CCTNAGC 2 cut(s) 671, 708
Bpu14I TTCGAA 1 cut(s) 546
BpuEI CTTGAG 2 cut(s) 862, 872
BpuMI CCSGG 2 cut(s) 747, 748
BsaHI GRCGYC 1 cut(s) 441
BsaI GGTCTC 2 cut(s) 141, 1227
BsaJI CCNNGG 5 cut(s) 151, 277, 746, 1006, 1154
BsaWI WCCGGW 1 cut(s) 830
BsaXI ACNNNNNCTCC 2 cut(s) 668, 698
Bsc4I CCNNNNNNNGG 2 cut(s) 954, 1159
Bse118I RCCGGY 2 cut(s) 482, 486
Bse1I ACTGG 2 cut(s) 109, 350
BseBI CCWGG 2 cut(s) 209, 1007
BseDI CCNNGG 5 cut(s) 151, 277, 746, 1006, 1154
BseGI GGATG 6 cut(s) 72, 240, 829, 963, 1213, 1306
BseLI CCNNNNNNNGG 2 cut(s) 954, 1159
BseMII CTCAG 6 cut(s) 469, 587, 699, 872, 1125, 1329
BseNI ACTGG 2 cut(s) 109, 350
BseRI GAGGAG 1 cut(s) 254
BseX3I CGGCCG 1 cut(s) 484
BseXI GCAGC 1 cut(s) 519
BseYI CCCAGC 1 cut(s) 225
Bsh1285I CGRYCG 1 cut(s) 487
BshFI GGCC 1 cut(s) 486
BsiEI CGRYCG 1 cut(s) 487
BsiHKAI GWGCWC 1 cut(s) 348
BsiHKCI CYCGRG 4 cut(s) 497, 640, 746, 1153
BsiSI CCGG 4 cut(s) 483, 487, 747, 831
BslFI GGGAC 1 cut(s) 91
BslI CCNNNNNNNGG 2 cut(s) 954, 1159
BsmAI GTCTC 3 cut(s) 141, 458, 1227
BsmFI GGGAC 1 cut(s) 91
BsnI GGCC 1 cut(s) 486
Bso31I GGTCTC 2 cut(s) 141, 1227
BsoBI CYCGRG 4 cut(s) 497, 640, 746, 1153
Bsp119I TTCGAA 1 cut(s) 546
Bsp1286I GDGCHC 1 cut(s) 348
Bsp143I GATC 1 cut(s) 44
Bsp19I CCATGG 1 cut(s) 151
BspACI CCGC 4 cut(s) 190, 253, 274, 493
BspANI GGCC 1 cut(s) 486
BspCNI CTCAG 6 cut(s) 468, 586, 700, 871, 1126, 1328
BspHI TCATGA 1 cut(s) 895
BspLI GGNNCC 1 cut(s) 491
BspPI GGATC 1 cut(s) 39
BspT104I TTCGAA 1 cut(s) 546
BspTNI GGTCTC 2 cut(s) 141, 1227
BsrFI RCCGGY 2 cut(s) 482, 486
BsrI ACTGG 2 cut(s) 109, 350
BssAI RCCGGY 2 cut(s) 482, 486
BssECI CCNNGG 5 cut(s) 151, 277, 746, 1006, 1154
BssMI GATC 1 cut(s) 44
BssNI GRCGYC 1 cut(s) 441
BssT1I CCWWGG 1 cut(s) 151
Bst2UI CCWGG 2 cut(s) 209, 1007
Bst4CI ACNGT 5 cut(s) 588, 816, 916, 1057, 1279
Bst6I CTCTTC 3 cut(s) 857, 869, 1225
BstACI GRCGYC 1 cut(s) 441
BstBI TTCGAA 1 cut(s) 546
BstC8I GCNNGC 2 cut(s) 271, 488
BstDEI CTNAG 8 cut(s) 455, 573, 671, 708, 858, 1064, 1134, 1315
BstDSI CCRYGG 1 cut(s) 151
BstEII GGTNACC 1 cut(s) 810
BstF5I GGATG 6 cut(s) 72, 240, 829, 963, 1213, 1306
BstHHI GCGC 1 cut(s) 598
BstKTI GATC 1 cut(s) 47
BstMAI GTCTC 3 cut(s) 141, 458, 1227
BstMBI GATC 1 cut(s) 44
BstMCI CGRYCG 1 cut(s) 487
BstMWI GCNNNNNNNGC 1 cut(s) 492
BstNI CCWGG 2 cut(s) 209, 1007
BstNSI RCATGY 1 cut(s) 506
BstPAI GACNNNNGTC 1 cut(s) 103
BstPI GGTNACC 1 cut(s) 810
BstSCI CCNGG 4 cut(s) 207, 745, 746, 1005
BstSFI CTRYAG 1 cut(s) 660
BstV1I GCAGC 1 cut(s) 519
BstV2I GAAGAC 1 cut(s) 191
BstX2I RGATCY 1 cut(s) 44
BstYI RGATCY 1 cut(s) 44
BstZI CGGCCG 1 cut(s) 484
BsuRI GGCC 1 cut(s) 486
BtgI CCRYGG 1 cut(s) 151
BtsCI GGATG 6 cut(s) 72, 240, 829, 963, 1213, 1306
BtsI GCAGTG 1 cut(s) 786
BtsIMutI CAGTG 2 cut(s) 786, 1062
Cac8I GCNNGC 2 cut(s) 271, 488
CaiI CAGNNNCTG 1 cut(s) 887
CciI TCATGA 1 cut(s) 895
CfoI GCGC 1 cut(s) 598
Cfr10I RCCGGY 2 cut(s) 482, 486
Cfr13I GGNCC 2 cut(s) 196, 211
Cfr9I CCCGGG 1 cut(s) 746
CseI GACGC 1 cut(s) 449
Csp6I GTAC 2 cut(s) 568, 616
CspCI CAANNNNNGTGG 2 cut(s) 1181, 1216
CviAII CATG 8 cut(s) 103, 152, 169, 326, 503, 896, 1040, 1238
CviQI GTAC 2 cut(s) 568, 616
DdeI CTNAG 8 cut(s) 455, 573, 671, 708, 858, 1064, 1134, 1315
DpnI GATC 1 cut(s) 46
DpnII GATC 1 cut(s) 44
DriI GACNNNNNGTC 1 cut(s) 844
EaeI YGGCCR 1 cut(s) 484
EagI CGGCCG 1 cut(s) 484
Eam1104I CTCTTC 3 cut(s) 857, 869, 1225
Eam1105I GACNNNNNGTC 1 cut(s) 844
EarI CTCTTC 3 cut(s) 857, 869, 1225
EciI GGCGGA 1 cut(s) 482
EclXI CGGCCG 1 cut(s) 484
Eco130I CCWWGG 1 cut(s) 151
Eco31I GGTCTC 2 cut(s) 141, 1227
Eco47I GGWCC 2 cut(s) 196, 211
Eco52I CGGCCG 1 cut(s) 484
Eco57I CTGAAG 1 cut(s) 983
Eco88I CYCGRG 4 cut(s) 497, 640, 746, 1153
Eco91I GGTNACC 1 cut(s) 810
EcoO109I RGGNCCY 1 cut(s) 211
EcoO65I GGTNACC 1 cut(s) 810
EcoRI GAATTC 1 cut(s) 1246
EcoRII CCWGG 2 cut(s) 207, 1005
EcoT14I CCWWGG 1 cut(s) 151
ErhI CCWWGG 1 cut(s) 151
FaeI CATG 8 cut(s) 106, 155, 172, 329, 506, 899, 1043, 1241
FalI AAGNNNNNCTT 2 cut(s) 978, 1010
FaqI GGGAC 1 cut(s) 91
FatI CATG 8 cut(s) 102, 151, 168, 325, 502, 895, 1039, 1237
FauI CCCGC 2 cut(s) 197, 260
Fnu4HI GCNGC 2 cut(s) 274, 533
FokI GGATG 6 cut(s) 59, 227, 836, 970, 1220, 1313
Fsp4HI GCNGC 2 cut(s) 274, 533
FspBI CTAG 2 cut(s) 606, 1029
FspI TGCGCA 1 cut(s) 597
GlaI GCGC 1 cut(s) 597
GluI GCNGC 2 cut(s) 274, 533
GsaI CCCAGC 1 cut(s) 229
GsuI CTGGAG 1 cut(s) 380
HaeIII GGCC 1 cut(s) 486
HapII CCGG 4 cut(s) 483, 487, 747, 831
HgaI GACGC 1 cut(s) 449
HhaI GCGC 1 cut(s) 598
Hin1I GRCGYC 1 cut(s) 441
Hin1II CATG 8 cut(s) 106, 155, 172, 329, 506, 899, 1043, 1241
Hin6I GCGC 1 cut(s) 596
HinP1I GCGC 1 cut(s) 596
HincII GTYRAC 1 cut(s) 912
HindII GTYRAC 1 cut(s) 912
HindIII AAGCTT 2 cut(s) 668, 1046
HinfI GANTC 5 cut(s) 82, 141, 360, 892, 1337
HpaI GTTAAC 1 cut(s) 912
HpaII CCGG 4 cut(s) 483, 487, 747, 831
HphI GGTGA 3 cut(s) 804, 1097, 1340
Hpy166II GTNNAC 3 cut(s) 114, 199, 912
Hpy188I TCNGA 8 cut(s) 57, 146, 357, 458, 510, 861, 1318, 1342
Hpy188III TCNNGA 3 cut(s) 79, 397, 896
Hpy8I GTNNAC 3 cut(s) 114, 199, 912
HpyAV CCTTC 3 cut(s) 409, 1075, 1153
HpyCH4III ACNGT 5 cut(s) 588, 816, 916, 1057, 1279
HpyCH4V TGCA 3 cut(s) 4, 515, 779
HpyF10VI GCNNNNNNNGC 1 cut(s) 492
HpyF3I CTNAG 8 cut(s) 455, 573, 671, 708, 858, 1064, 1134, 1315
Hsp92I GRCGYC 1 cut(s) 441
Hsp92II CATG 8 cut(s) 106, 155, 172, 329, 506, 899, 1043, 1241
HspAI GCGC 1 cut(s) 596
KroI GCCGGC 1 cut(s) 486
KroNI GCCGGC 1 cut(s) 488
KspAI GTTAAC 1 cut(s) 912
Kzo9I GATC 1 cut(s) 44
LmnI GCTCC 1 cut(s) 495
Lsp1109I GCAGC 1 cut(s) 519
LweI GCATC 2 cut(s) 583, 694
MaeI CTAG 2 cut(s) 606, 1029
MaeIII GTNAC 4 cut(s) 445, 810, 846, 1187
MalI GATC 1 cut(s) 46
MboI GATC 1 cut(s) 44
MflI RGATCY 1 cut(s) 44
MhlI GDGCHC 1 cut(s) 348
MlyI GAGTC 2 cut(s) 150, 1331
MroNI GCCGGC 1 cut(s) 486
MroXI GAANNNNTTC 1 cut(s) 993
MseI TTAA 4 cut(s) 377, 753, 911, 1145
MspI CCGG 4 cut(s) 483, 487, 747, 831
MspR9I CCNGG 4 cut(s) 209, 747, 748, 1007
MvaI CCWGG 2 cut(s) 209, 1007
MwoI GCNNNNNNNGC 1 cut(s) 492
NaeI GCCGGC 1 cut(s) 488
NciI CCSGG 2 cut(s) 747, 748
NcoI CCATGG 1 cut(s) 151
NdeII GATC 1 cut(s) 44
NgoMIV GCCGGC 1 cut(s) 486
NlaIII CATG 8 cut(s) 106, 155, 172, 329, 506, 899, 1043, 1241
NlaIV GGNNCC 1 cut(s) 491
NmuCI GTSAC 3 cut(s) 445, 810, 846
NsbI TGCGCA 1 cut(s) 597
NspI RCATGY 1 cut(s) 506
NspV TTCGAA 1 cut(s) 546
PaeR7I CTCGAG 1 cut(s) 497
PagI TCATGA 1 cut(s) 895
PcsI WCGNNNNNNNCGW 1 cut(s) 379
PdiI GCCGGC 1 cut(s) 488
PdmI GAANNNNTTC 1 cut(s) 993
PfeI GAWTC 3 cut(s) 82, 360, 892
PfoI TCCNGGA 1 cut(s) 207
PkrI GCNGC 2 cut(s) 275, 534
PleI GAGTC 2 cut(s) 149, 1331
PpsI GAGTC 2 cut(s) 149, 1331
PpuMI RGGWCCY 1 cut(s) 211
PshAI GACNNNNGTC 1 cut(s) 103
PsiI TTATAA 1 cut(s) 1077
Psp5II RGGWCCY 1 cut(s) 211
Psp6I CCWGG 2 cut(s) 207, 1005
PspEI GGTNACC 1 cut(s) 810
PspFI CCCAGC 1 cut(s) 225
PspGI CCWGG 2 cut(s) 207, 1005
PspN4I GGNNCC 1 cut(s) 491
PspPI GGNCC 2 cut(s) 196, 211
PspPPI RGGWCCY 1 cut(s) 211
PspXI VCTCGAGB 1 cut(s) 497
PstNI CAGNNNCTG 1 cut(s) 887
PsuI RGATCY 1 cut(s) 44
RsaI GTAC 2 cut(s) 569, 617
RsaNI GTAC 2 cut(s) 568, 616
SaqAI TTAA 4 cut(s) 377, 753, 911, 1145
SatI GCNGC 2 cut(s) 274, 533
Sau3AI GATC 1 cut(s) 44
Sau96I GGNCC 2 cut(s) 196, 211
SchI GAGTC 2 cut(s) 150, 1331
ScrFI CCNGG 4 cut(s) 209, 747, 748, 1007
SduI GDGCHC 1 cut(s) 348
SfaNI GCATC 2 cut(s) 583, 694
SfcI CTRYAG 1 cut(s) 660
Sfr274I CTCGAG 1 cut(s) 497
SfuI TTCGAA 1 cut(s) 546
SinI GGWCC 2 cut(s) 196, 211
SlaI CTCGAG 1 cut(s) 497
SmaI CCCGGG 1 cut(s) 748
SmlI CTYRAG 3 cut(s) 497, 841, 851
SmoI CTYRAG 3 cut(s) 497, 841, 851
SsiI CCGC 4 cut(s) 190, 253, 274, 493
SspMI CTAG 2 cut(s) 606, 1029
StyD4I CCNGG 4 cut(s) 207, 745, 746, 1005
StyI CCWWGG 1 cut(s) 151
TaaI ACNGT 5 cut(s) 588, 816, 916, 1057, 1279
TaqI TCGA 5 cut(s) 258, 426, 498, 546, 591
TatI WGTACW 1 cut(s) 615
TauI GCSGC 1 cut(s) 276
TfiI GAWTC 3 cut(s) 82, 360, 892
Tru1I TTAA 4 cut(s) 377, 753, 911, 1145
Tru9I TTAA 4 cut(s) 377, 753, 911, 1145
TscAI CASTG 2 cut(s) 786, 1062
TseFI GTSAC 3 cut(s) 445, 810, 846
TseI GCWGC 1 cut(s) 532
Tsp45I GTSAC 3 cut(s) 445, 810, 846
TspDTI ATGAA 6 cut(s) 61, 718, 884, 980, 1040, 1325
TspMI CCCGGG 1 cut(s) 746
TspRI CASTG 2 cut(s) 786, 1062
VpaK11BI GGWCC 2 cut(s) 196, 211
XapI RAATTY 7 cut(s) 203, 317, 524, 736, 967, 989, 1246
XceI RCATGY 1 cut(s) 506
XhoI CTCGAG 1 cut(s) 497
XmaI CCCGGG 1 cut(s) 746
XmnI GAANNNNTTC 1 cut(s) 993
XspI CTAG 2 cut(s) 606, 1029
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.