Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0009357

Physical Location & Seq

Genomic Coordinates Reverse (-)

65646508 .. 65649750

Gene Structure 3243 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00046440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1968 bp

ATGAACATCTTCTTCACCTATTCCTTCCATTTCCTCAAACCCAACTCCAAAACCCTCCACCCCATCCCTCTCCTCCTCCACAGCCTCACCTCCACCAGACCCATCTCCAAATCCACCTCCATCCCCAAGAAAATGGACCGCGTCCGCGACCACGGCTACGACAACTACATGGAAATCGAGAAGAAGATCCGCAAAGTCCTCAAATTCCAGGCCCTCATTCTCTCCCAGCCCCACCAAATCATCCAAGCCTCTCGCCTCGACATGCTCGCCCGCCGCCTCGGCTTCAAGCAGCACGAGGCCGCCGCCTTCGTCCTCAAGTTCCCTCACGTTTTCGAGATTTACGAGCACCCGGTTCAGCGGGTCCTCTATTGCCGGCTGACCCGAAAAGCCCACCTCCAAATCGAGCAGGAGAAGCGGGCCCTGGCGGCCCAGGTCCCCGACGCCGTGACCCGGCTCAGGAAGCTGGTGATGATGTCCAATACGGGTCGGATCCGGCTCGAGCATGTTCGGATTGCCAGGTATGAATTCGGGCTACCCGATGATTTCGAATACTCTGTGGTTCTCAAGTACCCTGAGTATTTCAGATTGTTTGATGCTGATGAGACTAGGAGTAAGTACATTGAGGTAGTTGAGAAGGACCCAAGTTTAGCTGTTTGTGCTATAGAGAAGCTTAGGGAGCGAGAGATTGCGGTGTGGAAATGGCAGAGAGTGCCGTATTGGAGTCCTTATGAGGATGTTTCGGGGTATGACATGAGGTCGCTTGAGGCGCAGAAGAGGATGGAGAAGAGGGCCGTGGCGGTGATTCATGAGCTGTTGAATTTGACCGTGGAGAAGAAGATTACGTTGGAGAGGATTGCGCATTTTAGAATGGCCATGAATCTGCCGAAGAAGTTGAAGGAGTTTCTTCTGCAGCATCAGGGGATTTTCTACATTTCGACTAGGGGGAATCACGGGAAGCTTCATACGGTGTTTCTTAGGGAGGCTTATAGGAAGGGTGAGTTGGTAGAGCCGAATGATTTGTATTTGGCGAGAAGAAAGTTGGCTGAGTTGGTGTTGATGAGCCCAAGGAAGGCGAAAATGGATAGTGAATTGGTTAGTTACCATAGAGACTGGGGAGATGATGAGAGGGGGTTCGTTGGAAGAGAATATGGTGAGAATGCTTTTGAAGATTTTGGGGGTTGCAATGATGATAGGCAGAGGAGGGACTCGAATGCGGGTCAAAGTTTTGAGATTGAAGGCTGCAGTCACAAGAAAAAGCCACAACGAGATTGTTTCGTTGCTTCAGGAGAATGGAAATGTGAATTCCGGAAATTACTGTGGGCAGGCGGATTGTCACTGTTCAGAGCGAATGCGAGTCCCTGGCTTTCCTCGTGTCCTCTAAAAAACCCTAATGAAGTTCCTAGAGGGTTAAGTAGGAATTCAAAGAAAAGCATGCTAAGGCTGGCACAGTGTATGATGCAAAGATTTTGTAGGGGGGTTTGTGGCTTATCAGTGCGCCCGTGGGACAAACTCTGTATTGATAATTATGTCAAGGTCAAGGCTGTTTGGATGCCAGTCTCAAGGTCAGCTGCCGTCCACTGCAAGCCATGTAACAGATTGACAAGGATCACGGATGTGGCAAACAGTGTTTCTCTCTTTAATGCCAAGTGTCTTGATGTCATCAATAACAATAATTGCATGCTGATGTTCCAAGAGACGAGGACGGACGCTTCAGGGTCAGCAGTTGTGTGTGCACTGATTACTCCAACAAGTTCAGATATCATGATGGATGTCGTGTACGAGGGTGGTGATTCTACTTATGTAGATCTCTTACTATCAGGATTTGCAATCCTTCCTTGTGGTACATCTGACTATGCCAAAGGCGAAGGAAACGGCTATGATGACGGTGTATGTCTGCTGACAGTTGGATTCCGAATCGTGTGTGATTGGTGGGCAACCGACATCCAAGCTCACTATGCAGTCGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007275 GO:0008150 GO:0008285 GO:0009653 GO:0009791 GO:0010015 GO:0010101 GO:0010102 GO:0022622 GO:0032501 GO:0032502 GO:0042127 GO:0048364 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0065007 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PORR

Protein Analysis

655

Amino Acids

75.46

Weight (kDa)

9.16

Isoelectric Point (pI)

36.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PORR	PF11955	48 - 224	8.7e-52	Plant organelle RNA recognition domain
PORR	PF11955	227 - 355	2.2e-47	Plant organelle RNA recognition domain
PDF2_C	PF25797	529 - 642	2.8e-17	PDF2-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009357)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33495
fragaria_vesca	FvH4_3g19980 FvH4_3g19980 FvH4_3g19980 FvH4_3g19980 FvH4_3g19980 FvH4_3g19980
malus_domestica	MD01G1198200.v1.1 MD07G1266100.v1.1
prunus_persica	Prupe.2G291500_v2.0.a1
pyrus_communis	pycom01g20830
rosa_chinensis	RchiOBHm_Chr5g0033651
rosa_laevigata	RLG00000033496
rosa_multiflora	Rmu_co8282813.1_g000001 Rmu_sc0001768.1_g000027
rosa_roxburghii	Rroxscaffold_1G00046440
rosa_rugosa	Rorug05G0141500
rosa_samantha	Rh5AG232600 Rh5BG233200 Rh5CG262100 Rh5DG238900
rosa_wichuraiana	Rw5G021610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	858
AccII	CGCG	2 cut(s)	141, 147
AccIII	TCCGGA	1 cut(s)	1305
AclWI	GGATC	4 cut(s)	181, 484, 497, 1613
AcoI	YGGCCR	1 cut(s)	870
AcsI	RAATTY	5 cut(s)	203, 524, 817, 1301, 1417
AcuI	CTGAAG	2 cut(s)	1266, 1695
AcyI	GRCGYC	1 cut(s)	441
AfaI	GTAC	4 cut(s)	569, 617, 1778, 1843
AfiI	CCNNNNNNNGG	3 cut(s)	450, 456, 1069
AgsI	TTSAA	6 cut(s)	286, 817, 895, 1166, 1235, 1422
AhdI	GACNNNNNGTC	1 cut(s)	754
AjnI	CCWGG	5 cut(s)	207, 420, 429, 515, 1358
AjuI	GAANNNNNNNTTGG	4 cut(s)	827, 859, 983, 1015
AleI	CACNNNNGTG	1 cut(s)	1613
AluBI	AGCT	7 cut(s)	463, 650, 670, 811, 958, 1568, 1949
AluI	AGCT	7 cut(s)	463, 650, 670, 811, 958, 1568, 1949
Alw21I	GWGCWC	2 cut(s)	348, 1735
Alw26I	GTCTC	4 cut(s)	596, 1101, 1561, 1688
Alw44I	GTGCAC	1 cut(s)	1731
AlwI	GGATC	4 cut(s)	181, 484, 497, 1613
Ama87I	CYCGRG	1 cut(s)	497
Aor13HI	TCCGGA	1 cut(s)	1305
AoxI	GGCC	6 cut(s)	210, 297, 417, 426, 789, 870
ApaI	GGGCCC	1 cut(s)	421
ApaLI	GTGCAC	1 cut(s)	1731
ApeKI	GCWGC	4 cut(s)	289, 910, 1239, 1568
ApoI	RAATTY	5 cut(s)	203, 524, 817, 1301, 1417
Asp700I	GAANNNNTTC	1 cut(s)	8
AspLEI	GCGC	3 cut(s)	769, 859, 1497
AspS9I	GGNCC	9 cut(s)	136, 211, 361, 417, 418, 427, 433, 637, 789
AsuC2I	CCSGG	2 cut(s)	350, 451
AsuHPI	GGTGA	7 cut(s)	7, 79, 478, 811, 1007, 1163, 1799
AsuII	TTCGAA	1 cut(s)	546
AvaI	CYCGRG	1 cut(s)	497
AvaII	GGWCC	4 cut(s)	136, 361, 433, 637
BaeGI	GKGCMC	2 cut(s)	421, 1735
BalI	TGGCCA	1 cut(s)	872
BamHI	GGATCC	1 cut(s)	489
BanII	GRGCYC	2 cut(s)	421, 1064
BauI	CACGAG	2 cut(s)	293, 1369
Bbv12I	GWGCWC	2 cut(s)	348, 1735
BbvI	GCAGC	4 cut(s)	301, 922, 1226, 1555
BccI	CCATC	5 cut(s)	71, 110, 128, 772, 1759
BceAI	ACGGC	6 cut(s)	169, 428, 697, 776, 1556, 1888
BciT130I	CCWGG	5 cut(s)	209, 422, 431, 517, 1360
BcnI	CCSGG	2 cut(s)	350, 451
BcoDI	GTCTC	4 cut(s)	596, 1101, 1561, 1688
BfaI	CTAG	3 cut(s)	606, 939, 1401
BfmI	CTRYAG	3 cut(s)	660, 908, 1240
BglI	GCCNNNNNGGC	2 cut(s)	279, 425
BglII	AGATCT	1 cut(s)	1804
BisI	GCNGC	8 cut(s)	274, 290, 300, 303, 426, 911, 1240, 1569
BlsI	GCNGC	8 cut(s)	275, 291, 301, 304, 427, 912, 1241, 1570
Bme1390I	CCNGG	7 cut(s)	209, 350, 422, 431, 451, 517, 1360
Bme18I	GGWCC	4 cut(s)	136, 361, 433, 637
BmeRI	GACNNNNNGTC	1 cut(s)	754
BmeT110I	CYCGRG	1 cut(s)	497
BmgT120I	GGNCC	9 cut(s)	136, 211, 361, 417, 418, 427, 433, 637, 789
BmiI	GGNNCC	5 cut(s)	362, 419, 435, 491, 639
BmrFI	CCNGG	7 cut(s)	209, 350, 422, 431, 451, 517, 1360
BmrI	ACTGGG	1 cut(s)	1120
BmsI	GCATC	4 cut(s)	583, 922, 1446, 1539
BmuI	ACTGGG	1 cut(s)	1120
Bpu10I	CCTNAGC	3 cut(s)	455, 671, 1436
Bpu14I	TTCGAA	1 cut(s)	546
BpuEI	CTTGAG	4 cut(s)	299, 548, 782, 1543
BpuMI	CCSGG	2 cut(s)	350, 451
BsaHI	GRCGYC	1 cut(s)	441
BsaJI	CCNNGG	9 cut(s)	151, 277, 420, 429, 792, 825, 1064, 1358, 1499
BsaWI	WCCGGW	1 cut(s)	1305
Bsc4I	CCNNNNNNNGG	3 cut(s)	450, 456, 1069
Bse118I	RCCGGY	1 cut(s)	372
Bse1I	ACTGG	2 cut(s)	1115, 1553
Bse3DI	GCAATG	1 cut(s)	1189
BseAI	TCCGGA	1 cut(s)	1305
BseBI	CCWGG	5 cut(s)	209, 422, 431, 517, 1360
BseDI	CCNNGG	9 cut(s)	151, 277, 420, 429, 792, 825, 1064, 1358, 1499
BseGI	GGATG	9 cut(s)	63, 120, 240, 739, 783, 1554, 1618, 1774, 1941
BseLI	CCNNNNNNNGG	3 cut(s)	450, 456, 1069
BseMI	GCAATG	1 cut(s)	1189
BseMII	CTCAG	3 cut(s)	469, 564, 1035
BseNI	ACTGG	2 cut(s)	1115, 1553
BseRI	GAGGAG	3 cut(s)	62, 65, 1213
BseSI	GKGCMC	2 cut(s)	421, 1735
BseXI	GCAGC	4 cut(s)	301, 922, 1226, 1555
BseYI	CCCAGC	1 cut(s)	225
Bsh1236I	CGCG	2 cut(s)	141, 147
BshFI	GGCC	6 cut(s)	212, 299, 419, 428, 791, 872
BsiHKAI	GWGCWC	2 cut(s)	348, 1735
BsiHKCI	CYCGRG	1 cut(s)	497
BsiSI	CCGG	5 cut(s)	350, 373, 451, 493, 1306
BslFI	GGGAC	4 cut(s)	419, 1217, 1341, 1517
BslI	CCNNNNNNNGG	3 cut(s)	450, 456, 1069
BsmAI	GTCTC	4 cut(s)	596, 1101, 1561, 1688
BsmBI	CGTCTC	1 cut(s)	1688
BsmFI	GGGAC	4 cut(s)	419, 1217, 1341, 1517
BsmI	GAATGC	3 cut(s)	1162, 1216, 1354
BsnI	GGCC	6 cut(s)	212, 299, 419, 428, 791, 872
BsoBI	CYCGRG	1 cut(s)	497
Bsp119I	TTCGAA	1 cut(s)	546
Bsp120I	GGGCCC	1 cut(s)	417
Bsp1286I	GDGCHC	4 cut(s)	348, 421, 1064, 1735
Bsp13I	TCCGGA	1 cut(s)	1305
Bsp143I	GATC	4 cut(s)	186, 489, 1605, 1804
BspANI	GGCC	6 cut(s)	212, 299, 419, 428, 791, 872
BspCNI	CTCAG	3 cut(s)	468, 565, 1036
BspEI	TCCGGA	1 cut(s)	1305
BspFNI	CGCG	2 cut(s)	141, 147
BspHI	TCATGA	2 cut(s)	805, 1761
BspLI	GGNNCC	5 cut(s)	362, 419, 435, 491, 639
BspMAI	CTGCAG	2 cut(s)	912, 1244
BspPI	GGATC	4 cut(s)	181, 484, 497, 1613
BspT104I	TTCGAA	1 cut(s)	546
BsrDI	GCAATG	1 cut(s)	1189
BsrFI	RCCGGY	1 cut(s)	372
BsrI	ACTGG	2 cut(s)	1115, 1553
BssAI	RCCGGY	1 cut(s)	372
BssECI	CCNNGG	9 cut(s)	151, 277, 420, 429, 792, 825, 1064, 1358, 1499
BssMI	GATC	4 cut(s)	186, 489, 1605, 1804
BssNI	GRCGYC	1 cut(s)	441
BssSI	CACGAG	2 cut(s)	293, 1369
BssT1I	CCWWGG	1 cut(s)	1064
Bst2BI	CACGAG	2 cut(s)	293, 1369
Bst2UI	CCWGG	5 cut(s)	209, 422, 431, 517, 1360
Bst4CI	ACNGT	8 cut(s)	826, 967, 1317, 1338, 1449, 1625, 1886, 1903
Bst6I	CTCTTC	3 cut(s)	767, 779, 1135
BstACI	GRCGYC	1 cut(s)	441
BstAPI	GCANNNNNTGC	1 cut(s)	709
BstBI	TTCGAA	1 cut(s)	546
BstC8I	GCNNGC	9 cut(s)	267, 271, 374, 417, 1324, 1433, 1443, 1583, 1679
BstDEI	CTNAG	6 cut(s)	455, 573, 671, 974, 1044, 1436
BstDSI	CCRYGG	4 cut(s)	151, 792, 825, 1499
BstF5I	GGATG	9 cut(s)	63, 120, 240, 739, 783, 1554, 1618, 1774, 1941
BstFNI	CGCG	2 cut(s)	141, 147
BstHHI	GCGC	3 cut(s)	769, 859, 1497
BstKTI	GATC	4 cut(s)	189, 492, 1608, 1807
BstMAI	GTCTC	4 cut(s)	596, 1101, 1561, 1688
BstMBI	GATC	4 cut(s)	186, 489, 1605, 1804
BstNI	CCWGG	5 cut(s)	209, 422, 431, 517, 1360
BstNSI	RCATGY	4 cut(s)	265, 506, 1435, 1681
BstSCI	CCNGG	7 cut(s)	207, 348, 420, 429, 449, 515, 1358
BstSFI	CTRYAG	3 cut(s)	660, 908, 1240
BstSLI	GKGCMC	2 cut(s)	421, 1735
BstUI	CGCG	2 cut(s)	141, 147
BstV1I	GCAGC	4 cut(s)	301, 922, 1226, 1555
BstX2I	RGATCY	3 cut(s)	186, 489, 1804
BstXI	CCANNNNNNTGG	1 cut(s)	133
BstYI	RGATCY	3 cut(s)	186, 489, 1804
BsuRI	GGCC	6 cut(s)	212, 299, 419, 428, 791, 872
BtgI	CCRYGG	4 cut(s)	151, 792, 825, 1499
BtsCI	GGATG	9 cut(s)	63, 120, 240, 739, 783, 1554, 1618, 1774, 1941
BtsI	GCAGTG	1 cut(s)	1576
BtsIMutI	CAGTG	6 cut(s)	1334, 1454, 1497, 1576, 1630, 1733
Cac8I	GCNNGC	9 cut(s)	267, 271, 374, 417, 1324, 1433, 1443, 1583, 1679
CciI	TCATGA	2 cut(s)	805, 1761
CfoI	GCGC	3 cut(s)	769, 859, 1497
Cfr10I	RCCGGY	1 cut(s)	372
Cfr13I	GGNCC	9 cut(s)	136, 211, 361, 417, 418, 427, 433, 637, 789
CseI	GACGC	3 cut(s)	130, 449, 1715
Csp6I	GTAC	4 cut(s)	568, 616, 1777, 1842
CviQI	GTAC	4 cut(s)	568, 616, 1777, 1842
DdeI	CTNAG	6 cut(s)	455, 573, 671, 974, 1044, 1436
DpnI	GATC	4 cut(s)	188, 491, 1607, 1806
DpnII	GATC	4 cut(s)	186, 489, 1605, 1804
DriI	GACNNNNNGTC	1 cut(s)	754
EaeI	YGGCCR	1 cut(s)	870
Eam1104I	CTCTTC	3 cut(s)	767, 779, 1135
Eam1105I	GACNNNNNGTC	1 cut(s)	754
EarI	CTCTTC	3 cut(s)	767, 779, 1135
EciI	GGCGGA	1 cut(s)	1341
Eco130I	CCWWGG	1 cut(s)	1064
Eco24I	GRGCYC	2 cut(s)	421, 1064
Eco32I	GATATC	1 cut(s)	1759
Eco47I	GGWCC	4 cut(s)	136, 361, 433, 637
Eco57I	CTGAAG	2 cut(s)	1266, 1695
Eco88I	CYCGRG	1 cut(s)	497
EcoO109I	RGGNCCY	5 cut(s)	211, 361, 418, 433, 637
EcoRI	GAATTC	3 cut(s)	524, 1301, 1417
EcoRII	CCWGG	5 cut(s)	207, 420, 429, 515, 1358
EcoRV	GATATC	1 cut(s)	1759
EcoT14I	CCWWGG	1 cut(s)	1064
EcoT38I	GRGCYC	2 cut(s)	421, 1064
ErhI	CCWWGG	1 cut(s)	1064
Esp3I	CGTCTC	1 cut(s)	1688
FaqI	GGGAC	4 cut(s)	419, 1217, 1341, 1517
FauI	CCCGC	4 cut(s)	278, 351, 408, 1207
Fnu4HI	GCNGC	8 cut(s)	274, 290, 300, 303, 426, 911, 1240, 1569
FokI	GGATG	9 cut(s)	50, 107, 227, 746, 790, 1561, 1625, 1781, 1928
FriOI	GRGCYC	2 cut(s)	421, 1064
Fsp4HI	GCNGC	8 cut(s)	274, 290, 300, 303, 426, 911, 1240, 1569
FspBI	CTAG	3 cut(s)	606, 939, 1401
FspI	TGCGCA	1 cut(s)	858
GlaI	GCGC	3 cut(s)	768, 858, 1496
GluI	GCNGC	8 cut(s)	274, 290, 300, 303, 426, 911, 1240, 1569
GsaI	CCCAGC	1 cut(s)	229
HaeIII	GGCC	6 cut(s)	212, 299, 419, 428, 791, 872
HapII	CCGG	5 cut(s)	350, 373, 451, 493, 1306
HgaI	GACGC	3 cut(s)	130, 449, 1715
HhaI	GCGC	3 cut(s)	769, 859, 1497
Hin1I	GRCGYC	1 cut(s)	441
Hin6I	GCGC	3 cut(s)	767, 857, 1495
HinP1I	GCGC	3 cut(s)	767, 857, 1495
HindIII	AAGCTT	2 cut(s)	668, 956
HinfI	GANTC	9 cut(s)	721, 802, 877, 946, 1205, 1354, 1790, 1908, 1914
HpaII	CCGG	5 cut(s)	350, 373, 451, 493, 1306
HphI	GGTGA	7 cut(s)	7, 79, 478, 811, 1007, 1163, 1799
Hpy166II	GTNNAC	3 cut(s)	1576, 1733, 1777
Hpy188I	TCNGA	7 cut(s)	489, 510, 584, 1343, 1756, 1849, 1913
Hpy188III	TCNNGA	9 cut(s)	178, 334, 457, 806, 1284, 1306, 1652, 1762, 1818
Hpy8I	GTNNAC	3 cut(s)	1576, 1733, 1777
Hpy99I	CGWCG	1 cut(s)	443
HpyAV	CCTTC	9 cut(s)	34, 316, 628, 889, 985, 1063, 1229, 1841, 1859
HpyCH4III	ACNGT	8 cut(s)	826, 967, 1317, 1338, 1449, 1625, 1886, 1903
HpyCH4IV	ACGT	2 cut(s)	327, 842
HpyCH4V	TGCA	9 cut(s)	910, 1182, 1242, 1459, 1581, 1677, 1733, 1826, 1958
HpyF3I	CTNAG	6 cut(s)	455, 573, 671, 974, 1044, 1436
HpySE526I	ACGT	2 cut(s)	327, 842
Hsp92I	GRCGYC	1 cut(s)	441
HspAI	GCGC	3 cut(s)	767, 857, 1495
Kpn2I	TCCGGA	1 cut(s)	1305
KroI	GCCGGC	1 cut(s)	372
KroNI	GCCGGC	1 cut(s)	374
Kzo9I	GATC	4 cut(s)	186, 489, 1605, 1804
LmnI	GCTCC	1 cut(s)	676
Lsp1109I	GCAGC	4 cut(s)	301, 922, 1226, 1555
LweI	GCATC	4 cut(s)	583, 922, 1446, 1539
MaeI	CTAG	3 cut(s)	606, 939, 1401
MaeII	ACGT	2 cut(s)	327, 842
MaeIII	GTNAC	5 cut(s)	445, 1097, 1244, 1332, 1589
MalI	GATC	4 cut(s)	188, 491, 1607, 1806
MboI	GATC	4 cut(s)	186, 489, 1605, 1804
MflI	RGATCY	3 cut(s)	186, 489, 1804
MhlI	GDGCHC	4 cut(s)	348, 421, 1064, 1735
MlsI	TGGCCA	1 cut(s)	872
MluCI	AATT	9 cut(s)	203, 524, 817, 1088, 1301, 1310, 1417, 1522, 1672
MluNI	TGGCCA	1 cut(s)	872
MlyI	GAGTC	3 cut(s)	730, 1199, 1363
MmeI	TCCRAC	5 cut(s)	467, 825, 1117, 1769, 1885
Mox20I	TGGCCA	1 cut(s)	872
MroI	TCCGGA	1 cut(s)	1305
MroNI	GCCGGC	1 cut(s)	372
MroXI	GAANNNNTTC	1 cut(s)	8
MscI	TGGCCA	1 cut(s)	872
MseI	TTAA	3 cut(s)	1409, 1638, 1966
MslI	CAYNNNNRTG	2 cut(s)	1613, 1682
Msp20I	TGGCCA	1 cut(s)	872
MspA1I	CMGCKG	2 cut(s)	358, 1568
MspI	CCGG	5 cut(s)	350, 373, 451, 493, 1306
MspR9I	CCNGG	7 cut(s)	209, 350, 422, 431, 451, 517, 1360
Mva1269I	GAATGC	3 cut(s)	1162, 1216, 1354
MvaI	CCWGG	5 cut(s)	209, 422, 431, 517, 1360
MvnI	CGCG	2 cut(s)	141, 147
NaeI	GCCGGC	1 cut(s)	374
NciI	CCSGG	2 cut(s)	350, 451
NdeII	GATC	4 cut(s)	186, 489, 1605, 1804
NgoMIV	GCCGGC	1 cut(s)	372
NlaIV	GGNNCC	5 cut(s)	362, 419, 435, 491, 639
NmeAIII	GCCGAG	1 cut(s)	258
NmuCI	GTSAC	3 cut(s)	445, 1244, 1332
NsbI	TGCGCA	1 cut(s)	858
NspI	RCATGY	4 cut(s)	265, 506, 1435, 1681
NspV	TTCGAA	1 cut(s)	546
OliI	CACNNNNGTG	1 cut(s)	1613
PaeI	GCATGC	2 cut(s)	1435, 1681
PaeR7I	CTCGAG	1 cut(s)	497
PagI	TCATGA	2 cut(s)	805, 1761
PcsI	WCGNNNNNNNCGW	2 cut(s)	339, 534
PctI	GAATGC	3 cut(s)	1162, 1216, 1354
PdiI	GCCGGC	1 cut(s)	374
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	6 cut(s)	802, 877, 946, 1790, 1908, 1914
PflFI	GACNNNGTC	1 cut(s)	140
PkrI	GCNGC	8 cut(s)	275, 291, 301, 304, 427, 912, 1241, 1570
PleI	GAGTC	3 cut(s)	729, 1199, 1362
PpsI	GAGTC	3 cut(s)	729, 1199, 1362
PpuMI	RGGWCCY	3 cut(s)	361, 433, 637
Psp5II	RGGWCCY	3 cut(s)	361, 433, 637
Psp6I	CCWGG	5 cut(s)	207, 420, 429, 515, 1358
PspFI	CCCAGC	1 cut(s)	225
PspGI	CCWGG	5 cut(s)	207, 420, 429, 515, 1358
PspN4I	GGNNCC	5 cut(s)	362, 419, 435, 491, 639
PspOMI	GGGCCC	1 cut(s)	417
PspPI	GGNCC	9 cut(s)	136, 211, 361, 417, 418, 427, 433, 637, 789
PspPPI	RGGWCCY	3 cut(s)	361, 433, 637
PspXI	VCTCGAGB	1 cut(s)	497
PstI	CTGCAG	2 cut(s)	912, 1244
PsuI	RGATCY	3 cut(s)	186, 489, 1804
PsyI	GACNNNGTC	1 cut(s)	140
PvuII	CAGCTG	1 cut(s)	1568
RsaI	GTAC	4 cut(s)	569, 617, 1778, 1843
RsaNI	GTAC	4 cut(s)	568, 616, 1777, 1842
RseI	CAYNNNNRTG	2 cut(s)	1613, 1682
SaqAI	TTAA	3 cut(s)	1409, 1638, 1966
SatI	GCNGC	8 cut(s)	274, 290, 300, 303, 426, 911, 1240, 1569
Sau3AI	GATC	4 cut(s)	186, 489, 1605, 1804
Sau96I	GGNCC	9 cut(s)	136, 211, 361, 417, 418, 427, 433, 637, 789
SchI	GAGTC	3 cut(s)	730, 1199, 1363
ScrFI	CCNGG	7 cut(s)	209, 350, 422, 431, 451, 517, 1360
SduI	GDGCHC	4 cut(s)	348, 421, 1064, 1735
SfaNI	GCATC	4 cut(s)	583, 922, 1446, 1539
SfcI	CTRYAG	3 cut(s)	660, 908, 1240
SfiI	GGCCNNNNNGGCC	1 cut(s)	425
Sfr274I	CTCGAG	1 cut(s)	497
SfuI	TTCGAA	1 cut(s)	546
SinI	GGWCC	4 cut(s)	136, 361, 433, 637
SlaI	CTCGAG	1 cut(s)	497
SmiMI	CAYNNNNRTG	2 cut(s)	1613, 1682
SmlI	CTYRAG	5 cut(s)	314, 497, 563, 761, 1558
SmoI	CTYRAG	5 cut(s)	314, 497, 563, 761, 1558
SphI	GCATGC	2 cut(s)	1435, 1681
Sse9I	AATT	9 cut(s)	203, 524, 817, 1088, 1301, 1310, 1417, 1522, 1672
SspMI	CTAG	3 cut(s)	606, 939, 1401
StyD4I	CCNGG	7 cut(s)	207, 348, 420, 429, 449, 515, 1358
StyI	CCWWGG	1 cut(s)	1064
TaaI	ACNGT	8 cut(s)	826, 967, 1317, 1338, 1449, 1625, 1886, 1903
TaiI	ACGT	2 cut(s)	330, 845
TaqI	TCGA	8 cut(s)	177, 258, 333, 402, 498, 546, 935, 1208
TasI	AATT	9 cut(s)	203, 524, 817, 1088, 1301, 1310, 1417, 1522, 1672
TatI	WGTACW	1 cut(s)	615
TauI	GCSGC	4 cut(s)	276, 302, 305, 428
TfiI	GAWTC	6 cut(s)	802, 877, 946, 1790, 1908, 1914
Tru1I	TTAA	3 cut(s)	1409, 1638, 1966
Tru9I	TTAA	3 cut(s)	1409, 1638, 1966
TscAI	CASTG	6 cut(s)	1341, 1454, 1497, 1583, 1630, 1740
TseFI	GTSAC	3 cut(s)	445, 1244, 1332
TseI	GCWGC	4 cut(s)	289, 910, 1239, 1568
Tsp45I	GTSAC	3 cut(s)	445, 1244, 1332
TspDTI	ATGAA	6 cut(s)	17, 537, 794, 890, 950, 1407
TspGWI	ACGGA	2 cut(s)	1625, 1718
TspRI	CASTG	6 cut(s)	1341, 1454, 1497, 1583, 1630, 1740
Tth111I	GACNNNGTC	1 cut(s)	140
VneI	GTGCAC	1 cut(s)	1731
VpaK11BI	GGWCC	4 cut(s)	136, 361, 433, 637
XapI	RAATTY	5 cut(s)	203, 524, 817, 1301, 1417
XceI	RCATGY	4 cut(s)	265, 506, 1435, 1681
XhoI	CTCGAG	1 cut(s)	497
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	3 cut(s)	606, 939, 1401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.