Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8282813.1

Orthogroup ID

OG0009357

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 833

Gene Structure 832 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8282813.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 832 bp

atgaacatcttcttcacctattcctcccatttcctcaaacccagctccaaaaccctccaccccatccctctcctcctcctccacagcctcacctccaccagacccatctccaaatccacctccatccccaagaaaatggaccgcgtccgcgaccacggctacgacaactacatggaaatcgagaagaagatccgcaaagtcctcaaattccaggccctcattctctcccatccccaccagatcatccaagcctctcgcctcgacatgctcgcccgccgcctcggcttcaagcagcacgaggccgccgccttcgtcctcaagttccctcacgtcttcgagatttacgagcacccggttcagcgggtcctctattgccggctgacccgaaaagcccacctccaaatcgagcaggagaagcgggccctggcggcccaggtccccgacgccgtgacccggctcaggaagctggtgatgatgtccaacacgggtcggatccggctcgagcatgttcggattgccaggtatgaattcgggctacccgatgatttcgaatactcggtagttctcaagtaccctgagtatttcagattgtttgatgctgatgagagtaggagtaagtacattgaggtagttgagaaggacccaagtttagctgtttgtgctatagagaagcttagggagagagagtatagggagaagggggttgatgctgaggatataaggttttcattcattgtgaattttccgccggggtttaagatagggaagtattataggattgctgtgtggaaatggcagagagtgccgtattggagtccttatgaggatgttt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007275 GO:0008150 GO:0008285 GO:0009653 GO:0009791 GO:0010015 GO:0010101 GO:0010102 GO:0022622 GO:0032501 GO:0032502 GO:0042127 GO:0048364 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0065007 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PORR

Protein Analysis

277

Amino Acids

32.91

Weight (kDa)

9.64

Isoelectric Point (pI)

36.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009357)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33495
fragaria_vesca	FvH4_3g19980 FvH4_3g19980 FvH4_3g19980 FvH4_3g19980 FvH4_3g19980 FvH4_3g19980
malus_domestica	MD01G1198200.v1.1 MD07G1266100.v1.1
prunus_persica	Prupe.2G291500_v2.0.a1
pyrus_communis	pycom01g20830
rosa_chinensis	RchiOBHm_Chr5g0033651
rosa_laevigata	RLG00000033496
rosa_multiflora	Rmu_co8282813.1_g000001 Rmu_sc0001768.1_g000027
rosa_roxburghii	Rroxscaffold_1G00046440
rosa_rugosa	Rorug05G0141500
rosa_samantha	Rh5AG232600 Rh5BG233200 Rh5CG262100 Rh5DG238900
rosa_wichuraiana	Rw5G021610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	144, 150
AclWI	GGATC	3 cut(s)	184, 487, 500
AcsI	RAATTY	3 cut(s)	206, 527, 739
AcyI	GRCGYC	1 cut(s)	444
AfaI	GTAC	2 cut(s)	572, 620
AfiI	CCNNNNNNNGG	2 cut(s)	453, 459
AgsI	TTSAA	1 cut(s)	289
AjiI	CACGTC	1 cut(s)	331
AjnI	CCWGG	4 cut(s)	210, 423, 432, 518
AluBI	AGCT	4 cut(s)	45, 466, 653, 673
AluI	AGCT	4 cut(s)	45, 466, 653, 673
Alw21I	GWGCWC	1 cut(s)	351
AlwI	GGATC	3 cut(s)	184, 487, 500
Ama87I	CYCGRG	1 cut(s)	500
AoxI	GGCC	4 cut(s)	213, 300, 420, 429
ApaI	GGGCCC	1 cut(s)	424
ApeKI	GCWGC	1 cut(s)	292
ApoI	RAATTY	3 cut(s)	206, 527, 739
Asp700I	GAANNNNTTC	1 cut(s)	8
AspS9I	GGNCC	8 cut(s)	139, 214, 364, 420, 421, 430, 436, 640
AsuC2I	CCSGG	3 cut(s)	353, 454, 750
AsuHPI	GGTGA	3 cut(s)	7, 82, 481
AsuII	TTCGAA	1 cut(s)	549
AvaI	CYCGRG	1 cut(s)	500
AvaII	GGWCC	4 cut(s)	139, 364, 436, 640
BaeGI	GKGCMC	1 cut(s)	424
BamHI	GGATCC	1 cut(s)	492
BanII	GRGCYC	1 cut(s)	424
BauI	CACGAG	1 cut(s)	296
BbsI	GAAGAC	1 cut(s)	325
Bbv12I	GWGCWC	1 cut(s)	351
BbvCI	CCTCAGC	1 cut(s)	711
BbvI	GCAGC	1 cut(s)	304
BccI	CCATC	4 cut(s)	71, 113, 131, 237
BceAI	ACGGC	3 cut(s)	172, 431, 790
BciT130I	CCWGG	4 cut(s)	212, 425, 434, 520
BcnI	CCSGG	3 cut(s)	353, 454, 750
BfmI	CTRYAG	1 cut(s)	663
BglI	GCCNNNNNGGC	2 cut(s)	282, 428
BisI	GCNGC	5 cut(s)	277, 293, 303, 306, 429
BlsI	GCNGC	5 cut(s)	278, 294, 304, 307, 430
Bme1390I	CCNGG	7 cut(s)	212, 353, 425, 434, 454, 520, 750
Bme18I	GGWCC	4 cut(s)	139, 364, 436, 640
BmeT110I	CYCGRG	1 cut(s)	500
BmgBI	CACGTC	1 cut(s)	331
BmgT120I	GGNCC	8 cut(s)	139, 214, 364, 420, 421, 430, 436, 640
BmiI	GGNNCC	5 cut(s)	365, 422, 438, 494, 642
BmrFI	CCNGG	7 cut(s)	212, 353, 425, 434, 454, 520, 750
BmsI	GCATC	2 cut(s)	586, 697
BpiI	GAAGAC	1 cut(s)	325
Bpu10I	CCTNAGC	3 cut(s)	458, 674, 711
Bpu14I	TTCGAA	1 cut(s)	549
BpuEI	CTTGAG	2 cut(s)	302, 551
BpuMI	CCSGG	3 cut(s)	353, 454, 750
BsaHI	GRCGYC	1 cut(s)	444
BsaJI	CCNNGG	5 cut(s)	154, 280, 423, 432, 749
BsaXI	ACNNNNNCTCC	2 cut(s)	671, 701
Bsc4I	CCNNNNNNNGG	2 cut(s)	453, 459
Bse118I	RCCGGY	1 cut(s)	375
BseBI	CCWGG	4 cut(s)	212, 425, 434, 520
BseDI	CCNNGG	5 cut(s)	154, 280, 423, 432, 749
BseGI	GGATG	5 cut(s)	63, 123, 229, 243, 832
BseLI	CCNNNNNNNGG	2 cut(s)	453, 459
BseMII	CTCAG	3 cut(s)	472, 567, 702
BseRI	GAGGAG	3 cut(s)	62, 65, 68
BseSI	GKGCMC	1 cut(s)	424
BseXI	GCAGC	1 cut(s)	304
BseYI	CCCAGC	1 cut(s)	41
Bsh1236I	CGCG	2 cut(s)	144, 150
BshFI	GGCC	4 cut(s)	215, 302, 422, 431
BsiHKAI	GWGCWC	1 cut(s)	351
BsiHKCI	CYCGRG	1 cut(s)	500
BsiSI	CCGG	5 cut(s)	353, 376, 454, 496, 749
BslFI	GGGAC	1 cut(s)	422
BslI	CCNNNNNNNGG	2 cut(s)	453, 459
BsmFI	GGGAC	1 cut(s)	422
BsnI	GGCC	4 cut(s)	215, 302, 422, 431
BsoBI	CYCGRG	1 cut(s)	500
Bsp119I	TTCGAA	1 cut(s)	549
Bsp120I	GGGCCC	1 cut(s)	420
Bsp1286I	GDGCHC	2 cut(s)	351, 424
Bsp143I	GATC	3 cut(s)	189, 240, 492
BspANI	GGCC	4 cut(s)	215, 302, 422, 431
BspCNI	CTCAG	3 cut(s)	471, 568, 703
BspFNI	CGCG	2 cut(s)	144, 150
BspLI	GGNNCC	5 cut(s)	365, 422, 438, 494, 642
BspPI	GGATC	3 cut(s)	184, 487, 500
BspT104I	TTCGAA	1 cut(s)	549
BsrFI	RCCGGY	1 cut(s)	375
BssAI	RCCGGY	1 cut(s)	375
BssECI	CCNNGG	5 cut(s)	154, 280, 423, 432, 749
BssMI	GATC	3 cut(s)	189, 240, 492
BssNI	GRCGYC	1 cut(s)	444
BssSI	CACGAG	1 cut(s)	296
Bst2BI	CACGAG	1 cut(s)	296
Bst2UI	CCWGG	4 cut(s)	212, 425, 434, 520
BstACI	GRCGYC	1 cut(s)	444
BstAPI	GCANNNNNTGC	1 cut(s)	802
BstBI	TTCGAA	1 cut(s)	549
BstC8I	GCNNGC	4 cut(s)	270, 274, 377, 420
BstDEI	CTNAG	4 cut(s)	458, 576, 674, 711
BstDSI	CCRYGG	1 cut(s)	154
BstF5I	GGATG	5 cut(s)	63, 123, 229, 243, 832
BstFNI	CGCG	2 cut(s)	144, 150
BstKTI	GATC	3 cut(s)	192, 243, 495
BstMBI	GATC	3 cut(s)	189, 240, 492
BstMWI	GCNNNNNNNGC	7 cut(s)	156, 282, 415, 428, 463, 659, 802
BstNI	CCWGG	4 cut(s)	212, 425, 434, 520
BstNSI	RCATGY	2 cut(s)	268, 509
BstSCI	CCNGG	7 cut(s)	210, 351, 423, 432, 452, 518, 748
BstSFI	CTRYAG	1 cut(s)	663
BstSLI	GKGCMC	1 cut(s)	424
BstUI	CGCG	2 cut(s)	144, 150
BstV1I	GCAGC	1 cut(s)	304
BstV2I	GAAGAC	1 cut(s)	325
BstX2I	RGATCY	2 cut(s)	189, 492
BstXI	CCANNNNNNTGG	1 cut(s)	136
BstYI	RGATCY	2 cut(s)	189, 492
BsuRI	GGCC	4 cut(s)	215, 302, 422, 431
BtgI	CCRYGG	1 cut(s)	154
BtrI	CACGTC	1 cut(s)	331
BtsCI	GGATG	5 cut(s)	63, 123, 229, 243, 832
Cac8I	GCNNGC	4 cut(s)	270, 274, 377, 420
Cfr10I	RCCGGY	1 cut(s)	375
Cfr13I	GGNCC	8 cut(s)	139, 214, 364, 420, 421, 430, 436, 640
CseI	GACGC	2 cut(s)	133, 452
Csp6I	GTAC	2 cut(s)	571, 619
CviAII	CATG	3 cut(s)	172, 265, 506
CviQI	GTAC	2 cut(s)	571, 619
DdeI	CTNAG	4 cut(s)	458, 576, 674, 711
DpnI	GATC	3 cut(s)	191, 242, 494
DpnII	GATC	3 cut(s)	189, 240, 492
EciI	GGCGGA	1 cut(s)	735
Eco24I	GRGCYC	1 cut(s)	424
Eco47I	GGWCC	4 cut(s)	139, 364, 436, 640
Eco88I	CYCGRG	1 cut(s)	500
EcoO109I	RGGNCCY	5 cut(s)	214, 364, 421, 436, 640
EcoRI	GAATTC	1 cut(s)	527
EcoRII	CCWGG	4 cut(s)	210, 423, 432, 518
EcoT38I	GRGCYC	1 cut(s)	424
FaeI	CATG	3 cut(s)	175, 268, 509
FaiI	YATR	9 cut(s)	173, 266, 507, 525, 665, 690, 719, 774, 822
FaqI	GGGAC	1 cut(s)	422
FatI	CATG	3 cut(s)	171, 264, 505
FauI	CCCGC	3 cut(s)	281, 354, 411
Fnu4HI	GCNGC	5 cut(s)	277, 293, 303, 306, 429
FokI	GGATG	4 cut(s)	50, 110, 216, 230
FriOI	GRGCYC	1 cut(s)	424
Fsp4HI	GCNGC	5 cut(s)	277, 293, 303, 306, 429
GluI	GCNGC	5 cut(s)	277, 293, 303, 306, 429
GsaI	CCCAGC	1 cut(s)	45
HaeIII	GGCC	4 cut(s)	215, 302, 422, 431
HapII	CCGG	5 cut(s)	353, 376, 454, 496, 749
HgaI	GACGC	2 cut(s)	133, 452
Hin1I	GRCGYC	1 cut(s)	444
Hin1II	CATG	3 cut(s)	175, 268, 509
HindIII	AAGCTT	1 cut(s)	671
HinfI	GANTC	1 cut(s)	814
HpaII	CCGG	5 cut(s)	353, 376, 454, 496, 749
HphI	GGTGA	3 cut(s)	7, 82, 481
Hpy188I	TCNGA	3 cut(s)	492, 513, 587
Hpy188III	TCNNGA	3 cut(s)	181, 337, 460
Hpy99I	CGWCG	1 cut(s)	446
HpyAV	CCTTC	3 cut(s)	319, 631, 691
HpyCH4IV	ACGT	1 cut(s)	330
HpyF10VI	GCNNNNNNNGC	7 cut(s)	156, 282, 415, 428, 463, 659, 802
HpyF3I	CTNAG	4 cut(s)	458, 576, 674, 711
HpySE526I	ACGT	1 cut(s)	330
Hsp92I	GRCGYC	1 cut(s)	444
Hsp92II	CATG	3 cut(s)	175, 268, 509
KroI	GCCGGC	1 cut(s)	375
KroNI	GCCGGC	1 cut(s)	377
Kzo9I	GATC	3 cut(s)	189, 240, 492
LmnI	GCTCC	1 cut(s)	50
Lsp1109I	GCAGC	1 cut(s)	304
LweI	GCATC	2 cut(s)	586, 697
MaeII	ACGT	1 cut(s)	330
MaeIII	GTNAC	1 cut(s)	448
MalI	GATC	3 cut(s)	191, 242, 494
MboI	GATC	3 cut(s)	189, 240, 492
MboII	GAAGA	4 cut(s)	4, 196, 199, 325
MflI	RGATCY	2 cut(s)	189, 492
MhlI	GDGCHC	2 cut(s)	351, 424
MluCI	AATT	3 cut(s)	206, 527, 739
MlyI	GAGTC	1 cut(s)	823
MmeI	TCCRAC	2 cut(s)	470, 504
MroNI	GCCGGC	1 cut(s)	375
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	1 cut(s)	756
MspA1I	CMGCKG	1 cut(s)	361
MspI	CCGG	5 cut(s)	353, 376, 454, 496, 749
MspR9I	CCNGG	7 cut(s)	212, 353, 425, 434, 454, 520, 750
MvaI	CCWGG	4 cut(s)	212, 425, 434, 520
MvnI	CGCG	2 cut(s)	144, 150
MwoI	GCNNNNNNNGC	7 cut(s)	156, 282, 415, 428, 463, 659, 802
NaeI	GCCGGC	1 cut(s)	377
NciI	CCSGG	3 cut(s)	353, 454, 750
NdeII	GATC	3 cut(s)	189, 240, 492
NgoMIV	GCCGGC	1 cut(s)	375
NlaIII	CATG	3 cut(s)	175, 268, 509
NlaIV	GGNNCC	5 cut(s)	365, 422, 438, 494, 642
NmeAIII	GCCGAG	1 cut(s)	261
NmuCI	GTSAC	1 cut(s)	448
NspI	RCATGY	2 cut(s)	268, 509
NspV	TTCGAA	1 cut(s)	549
PaeR7I	CTCGAG	1 cut(s)	500
PcsI	WCGNNNNNNNCGW	2 cut(s)	342, 537
PdiI	GCCGGC	1 cut(s)	377
PdmI	GAANNNNTTC	1 cut(s)	8
PflFI	GACNNNGTC	1 cut(s)	143
PkrI	GCNGC	5 cut(s)	278, 294, 304, 307, 430
PleI	GAGTC	1 cut(s)	822
PpsI	GAGTC	1 cut(s)	822
PpuMI	RGGWCCY	3 cut(s)	364, 436, 640
Psp5II	RGGWCCY	3 cut(s)	364, 436, 640
Psp6I	CCWGG	4 cut(s)	210, 423, 432, 518
PspFI	CCCAGC	1 cut(s)	41
PspGI	CCWGG	4 cut(s)	210, 423, 432, 518
PspN4I	GGNNCC	5 cut(s)	365, 422, 438, 494, 642
PspOMI	GGGCCC	1 cut(s)	420
PspPI	GGNCC	8 cut(s)	139, 214, 364, 420, 421, 430, 436, 640
PspPPI	RGGWCCY	3 cut(s)	364, 436, 640
PspXI	VCTCGAGB	1 cut(s)	500
PsuI	RGATCY	2 cut(s)	189, 492
PsyI	GACNNNGTC	1 cut(s)	143
RsaI	GTAC	2 cut(s)	572, 620
RsaNI	GTAC	2 cut(s)	571, 619
SaqAI	TTAA	1 cut(s)	756
SatI	GCNGC	5 cut(s)	277, 293, 303, 306, 429
Sau3AI	GATC	3 cut(s)	189, 240, 492
Sau96I	GGNCC	8 cut(s)	139, 214, 364, 420, 421, 430, 436, 640
SchI	GAGTC	1 cut(s)	823
ScrFI	CCNGG	7 cut(s)	212, 353, 425, 434, 454, 520, 750
SduI	GDGCHC	2 cut(s)	351, 424
SfaNI	GCATC	2 cut(s)	586, 697
SfcI	CTRYAG	1 cut(s)	663
SfiI	GGCCNNNNNGGCC	1 cut(s)	428
Sfr274I	CTCGAG	1 cut(s)	500
SfuI	TTCGAA	1 cut(s)	549
SinI	GGWCC	4 cut(s)	139, 364, 436, 640
SlaI	CTCGAG	1 cut(s)	500
SmlI	CTYRAG	3 cut(s)	317, 500, 566
SmoI	CTYRAG	3 cut(s)	317, 500, 566
Sse9I	AATT	3 cut(s)	206, 527, 739
StyD4I	CCNGG	7 cut(s)	210, 351, 423, 432, 452, 518, 748
TaiI	ACGT	1 cut(s)	333
TaqI	TCGA	6 cut(s)	180, 261, 336, 405, 501, 549
TasI	AATT	3 cut(s)	206, 527, 739
TatI	WGTACW	1 cut(s)	618
TauI	GCSGC	4 cut(s)	279, 305, 308, 431
Tru1I	TTAA	1 cut(s)	756
Tru9I	TTAA	1 cut(s)	756
TseFI	GTSAC	1 cut(s)	448
TseI	GCWGC	1 cut(s)	292
Tsp45I	GTSAC	1 cut(s)	448
TspDTI	ATGAA	4 cut(s)	17, 540, 717, 721
Tth111I	GACNNNGTC	1 cut(s)	143
VpaK11BI	GGWCC	4 cut(s)	139, 364, 436, 640
XapI	RAATTY	3 cut(s)	206, 527, 739
XceI	RCATGY	2 cut(s)	268, 509
XhoI	CTCGAG	1 cut(s)	500
XmnI	GAANNNNTTC	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.