MD07G1266100.v1.1

Plant organelle RNA recognition domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0009357
Physical Location & Seq
Reverse (-)
33435722 .. 33437071
1350 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1266100.v1.1.491

Sequence Viewer

Length: 1350 bp
ATGCGCATATTCTTAACCTACTCAACCAATTTCTTCAACCCCAAGTCAAAAACCCTAAACCCCATCACATTCCTCCTCTGCAATCTCACCCCGACCCGACCCAAATCGCAGTCGACCTCCATCCCCAAAAAACAAGGCAGAATCCGCGACCACGGCTACGACAACTACATGGAAATCGAAAAAAAGACCCGAAAAGTCCTCAAATTTCAGGACCTCATCCTGTCGCAGCCCAACCAAATCATCCAAGTCTCCCGGCTCGACCTCCTCGCCCGCCGCTTCGGCTTCAAGCAGAACGAGGCCGGCGTTTTCGTGCTCAAATTCCCCCACGTTTTCGAGATTTACGAGCACCCGGTTCAGCGGATCCTCTACTGCCGGCTGACCCGAAAAGCCCACCTCCAGATTGAGCAGGAGAAGCAGGCAATGGTGGCACAAATCCCCGACGCCGTCACCCGCCTTAGGAAGCTCCTGATGATGTCCAACACCGGGCGGCTCCGCCTCGAGCATGTCCGGATTGCGAGGGCGGAGTTTGGTCTGCCTGATGACTTCGAATACTCGGTAATTCTCAAGCACCCTGAATACTTTAGACTGTTTGATGCGGAGGAAACTAGGAACAAGTACATTGAGGTTGTCGAGAAAGATTGTAGTTTATCTGTTTGTGCTATTGAGAAACTTAGGGAGATTGAGTATAGGGAGAGAGGAATTGATGCCGAGGATATAAGGTTTTCGTTCATTGTGAATTTTCCGCCCGGGTTTAAGATTGGGAAGTACTATAGGATTGCGGTGTGGAAATGGCAGAGACTTCCGTATTGGTCTCCGTATGAGGATGTTTCCGGTTATGACTTGAGGTCGATTGAGGCGCAGAAGCGGATGGAGAAGAGAGCGGTTGCTGTGATTCACGAATTGCTGTCGTTGACTGTGGAGAAGAAGATTACATTGGAGAGGATTGCTCATTTTAGAATGGCGATGAATTTGCCGAATAAGTTGAAAGAGTTTCTGCTTCAGCATCAGGGGATTTTCTATATTTCGACTAGAGGGAATCACGGGAAGCTTCATACAGTGTTTCTTAGAGAGGCTTATAAGAAGGGTGAGTTGATAGAGTCAAATGATTTGTATTTGGCGAGAAGGAAATTGGCTGAGTTGGTTTTGATTAGCCCTAGGAAGGCAAGAATGGATAGTGAATTGGTTAGTTACCGCAGAGATTGGGAAGACGATGAGATGGGGCACGTTGGAAGAGAATGTGTTGGGAATGCTTTTGAGGATTTAGGAGGAGGGAATGATGATAGGCGGGAAAGGGATGTGGAGGATGGTACGAACTCAGATAGTGGTGGTGATTATGACTCCGATGGATGA

Protein Analysis

450

Amino Acids

52.74

Weight (kDa)

9.06

Isoelectric Point (pI)

42.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PORR PF11955 49 - 383 4.6e-112 Plant organelle RNA recognition domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1077
Acc16I TGCGCA 1 cut(s) 5
AccBSI CCGCTC 1 cut(s) 881
AccI GTMKAC 1 cut(s) 113
AccII CGCG 1 cut(s) 147
AccIII TCCGGA 1 cut(s) 507
AclWI GGATC 2 cut(s) 355, 368
AcsI RAATTY 4 cut(s) 203, 317, 736, 967
AcuI CTGAAG 1 cut(s) 983
AcyI GRCGYC 1 cut(s) 441
AfaI GTAC 3 cut(s) 617, 767, 1309
AfiI CCNNNNNNNGG 3 cut(s) 456, 483, 1159
AgsI TTSAA 3 cut(s) 37, 286, 985
AhdI GACNNNNNGTC 1 cut(s) 844
AjuI GAANNNNNNNTTGG 2 cut(s) 917, 949
AluBI AGCT 2 cut(s) 463, 1048
AluI AGCT 2 cut(s) 463, 1048
Alw21I GWGCWC 2 cut(s) 315, 348
Alw26I GTCTC 3 cut(s) 253, 790, 816
AlwI GGATC 2 cut(s) 355, 368
Ama87I CYCGRG 2 cut(s) 497, 746
Aor13HI TCCGGA 1 cut(s) 507
AoxI GGCC 1 cut(s) 297
ApeKI GCWGC 1 cut(s) 226
ApoI RAATTY 4 cut(s) 203, 317, 736, 967
AspA2I CCTAGG 1 cut(s) 1154
AspLEI GCGC 2 cut(s) 6, 859
AspS9I GGNCC 1 cut(s) 211
AsuC2I CCSGG 5 cut(s) 253, 350, 484, 747, 748
AsuHPI GGTGA 4 cut(s) 79, 439, 1097, 1340
AsuII TTCGAA 1 cut(s) 546
AvaI CYCGRG 2 cut(s) 497, 746
AvaII GGWCC 1 cut(s) 211
AvrII CCTAGG 1 cut(s) 1154
AxyI CCTNAGG 1 cut(s) 455
BaeGI GKGCMC 1 cut(s) 1224
BamHI GGATCC 1 cut(s) 360
BbsI GAAGAC 1 cut(s) 1212
Bbv12I GWGCWC 2 cut(s) 315, 348
BbvI GCAGC 1 cut(s) 238
BccI CCATC 6 cut(s) 71, 128, 862, 1210, 1298, 1337
BceAI ACGGC 2 cut(s) 169, 428
BcgI CGANNNNNNTGC 2 cut(s) 952, 986
BcnI CCSGG 5 cut(s) 253, 350, 484, 747, 748
BcoDI GTCTC 3 cut(s) 253, 790, 816
BfaI CTAG 3 cut(s) 606, 1029, 1155
BfmI CTRYAG 1 cut(s) 769
BglI GCCNNNNNGGC 1 cut(s) 279
BisI GCNGC 3 cut(s) 227, 274, 488
BlnI CCTAGG 1 cut(s) 1154
BlsI GCNGC 3 cut(s) 228, 275, 489
BmcAI AGTACT 1 cut(s) 767
Bme1390I CCNGG 5 cut(s) 253, 350, 484, 747, 748
Bme18I GGWCC 1 cut(s) 211
BmeRI GACNNNNNGTC 1 cut(s) 844
BmeT110I CYCGRG 2 cut(s) 497, 746
BmgT120I GGNCC 1 cut(s) 211
BmiI GGNNCC 2 cut(s) 362, 491
BmrFI CCNGG 5 cut(s) 253, 350, 484, 747, 748
BmsI GCATC 3 cut(s) 583, 694, 1012
BpiI GAAGAC 1 cut(s) 1212
BplI GAGNNNNNCTC 2 cut(s) 931, 963
BpmI CTGGAG 1 cut(s) 380
Bpu14I TTCGAA 1 cut(s) 546
BpuEI CTTGAG 2 cut(s) 548, 862
BpuMI CCSGG 5 cut(s) 253, 350, 484, 747, 748
BsaHI GRCGYC 1 cut(s) 441
BsaI GGTCTC 1 cut(s) 816
BsaJI CCNNGG 4 cut(s) 151, 708, 746, 1154
BsaWI WCCGGW 2 cut(s) 507, 830
BsaXI ACNNNNNCTCC 2 cut(s) 668, 698
Bsc4I CCNNNNNNNGG 3 cut(s) 456, 483, 1159
Bse118I RCCGGY 2 cut(s) 299, 372
Bse21I CCTNAGG 1 cut(s) 455
Bse3DI GCAATG 1 cut(s) 426
BseAI TCCGGA 1 cut(s) 507
BseDI CCNNGG 4 cut(s) 151, 708, 746, 1154
BseGI GGATG 7 cut(s) 120, 216, 240, 829, 873, 1300, 1309
BseLI CCNNNNNNNGG 3 cut(s) 456, 483, 1159
BseMI GCAATG 1 cut(s) 426
BseMII CTCAG 2 cut(s) 1125, 1329
BseRI GAGGAG 3 cut(s) 65, 254, 1281
BseSI GKGCMC 1 cut(s) 1224
BseXI GCAGC 1 cut(s) 238
Bsh1236I CGCG 1 cut(s) 147
BshFI GGCC 1 cut(s) 299
BsiHKAI GWGCWC 2 cut(s) 315, 348
BsiHKCI CYCGRG 2 cut(s) 497, 746
BsiSI CCGG 8 cut(s) 253, 300, 350, 373, 483, 508, 747, 831
BslI CCNNNNNNNGG 3 cut(s) 456, 483, 1159
BsmAI GTCTC 3 cut(s) 253, 790, 816
BsmI GAATGC 1 cut(s) 1252
BsnI GGCC 1 cut(s) 299
Bso31I GGTCTC 1 cut(s) 816
BsoBI CYCGRG 2 cut(s) 497, 746
Bsp119I TTCGAA 1 cut(s) 546
Bsp1286I GDGCHC 3 cut(s) 315, 348, 1224
Bsp13I TCCGGA 1 cut(s) 507
Bsp143I GATC 1 cut(s) 360
BspANI GGCC 1 cut(s) 299
BspCNI CTCAG 2 cut(s) 1126, 1328
BspEI TCCGGA 1 cut(s) 507
BspFNI CGCG 1 cut(s) 147
BspLI GGNNCC 2 cut(s) 362, 491
BspPI GGATC 2 cut(s) 355, 368
BspT104I TTCGAA 1 cut(s) 546
BspTNI GGTCTC 1 cut(s) 816
BsrBI CCGCTC 1 cut(s) 881
BsrDI GCAATG 1 cut(s) 426
BsrFI RCCGGY 2 cut(s) 299, 372
BssAI RCCGGY 2 cut(s) 299, 372
BssECI CCNNGG 4 cut(s) 151, 708, 746, 1154
BssMI GATC 1 cut(s) 360
BssNI GRCGYC 1 cut(s) 441
BssT1I CCWWGG 1 cut(s) 1154
Bst4CI ACNGT 3 cut(s) 588, 916, 1057
Bst6I CTCTTC 2 cut(s) 869, 1225
BstACI GRCGYC 1 cut(s) 441
BstBI TTCGAA 1 cut(s) 546
BstC8I GCNNGC 4 cut(s) 271, 301, 374, 417
BstDEI CTNAG 5 cut(s) 455, 671, 1064, 1134, 1315
BstDSI CCRYGG 1 cut(s) 151
BstF5I GGATG 7 cut(s) 120, 216, 240, 829, 873, 1300, 1309
BstFNI CGCG 1 cut(s) 147
BstHHI GCGC 2 cut(s) 6, 859
BstKTI GATC 1 cut(s) 363
BstMAI GTCTC 3 cut(s) 253, 790, 816
BstMBI GATC 1 cut(s) 360
BstMWI GCNNNNNNNGC 5 cut(s) 144, 153, 279, 412, 425
BstNSI RCATGY 1 cut(s) 506
BstSCI CCNGG 5 cut(s) 251, 348, 482, 745, 746
BstSFI CTRYAG 1 cut(s) 769
BstSLI GKGCMC 1 cut(s) 1224
BstUI CGCG 1 cut(s) 147
BstV1I GCAGC 1 cut(s) 238
BstV2I GAAGAC 1 cut(s) 1212
BstX2I RGATCY 1 cut(s) 360
BstYI RGATCY 1 cut(s) 360
Bsu36I CCTNAGG 1 cut(s) 455
BsuRI GGCC 1 cut(s) 299
BtgI CCRYGG 1 cut(s) 151
BtgZI GCGATG 1 cut(s) 977
BtsCI GGATG 7 cut(s) 120, 216, 240, 829, 873, 1300, 1309
BtsIMutI CAGTG 1 cut(s) 1062
Cac8I GCNNGC 4 cut(s) 271, 301, 374, 417
CfoI GCGC 2 cut(s) 6, 859
Cfr10I RCCGGY 2 cut(s) 299, 372
Cfr13I GGNCC 1 cut(s) 211
Cfr9I CCCGGG 1 cut(s) 746
CseI GACGC 1 cut(s) 449
Csp6I GTAC 3 cut(s) 616, 766, 1308
CviAII CATG 2 cut(s) 169, 503
CviQI GTAC 3 cut(s) 616, 766, 1308
DdeI CTNAG 5 cut(s) 455, 671, 1064, 1134, 1315
DpnI GATC 1 cut(s) 362
DpnII GATC 1 cut(s) 360
DriI GACNNNNNGTC 1 cut(s) 844
Eam1104I CTCTTC 2 cut(s) 869, 1225
Eam1105I GACNNNNNGTC 1 cut(s) 844
EarI CTCTTC 2 cut(s) 869, 1225
EciI GGCGGA 3 cut(s) 482, 536, 732
Eco130I CCWWGG 1 cut(s) 1154
Eco31I GGTCTC 1 cut(s) 816
Eco47I GGWCC 1 cut(s) 211
Eco57I CTGAAG 1 cut(s) 983
Eco81I CCTNAGG 1 cut(s) 455
Eco88I CYCGRG 2 cut(s) 497, 746
EcoO109I RGGNCCY 1 cut(s) 211
EcoT14I CCWWGG 1 cut(s) 1154
ErhI CCWWGG 1 cut(s) 1154
FaeI CATG 2 cut(s) 172, 506
FatI CATG 2 cut(s) 168, 502
FauI CCCGC 3 cut(s) 278, 458, 1278
FblI GTMKAC 1 cut(s) 113
Fnu4HI GCNGC 3 cut(s) 227, 274, 488
FokI GGATG 7 cut(s) 107, 203, 227, 836, 880, 1307, 1316
Fsp4HI GCNGC 3 cut(s) 227, 274, 488
FspAI RTGCGCAY 1 cut(s) 5
FspBI CTAG 3 cut(s) 606, 1029, 1155
FspI TGCGCA 1 cut(s) 5
GlaI GCGC 2 cut(s) 5, 858
GluI GCNGC 3 cut(s) 227, 274, 488
GsuI CTGGAG 1 cut(s) 380
HaeIII GGCC 1 cut(s) 299
HapII CCGG 8 cut(s) 253, 300, 350, 373, 483, 508, 747, 831
HgaI GACGC 1 cut(s) 449
HhaI GCGC 2 cut(s) 6, 859
Hin1I GRCGYC 1 cut(s) 441
Hin1II CATG 2 cut(s) 172, 506
Hin6I GCGC 2 cut(s) 4, 857
HinP1I GCGC 2 cut(s) 4, 857
HincII GTYRAC 2 cut(s) 114, 912
HindII GTYRAC 2 cut(s) 114, 912
HindIII AAGCTT 1 cut(s) 1046
HinfI GANTC 5 cut(s) 141, 892, 1036, 1097, 1337
HpaII CCGG 8 cut(s) 253, 300, 350, 373, 483, 508, 747, 831
HphI GGTGA 4 cut(s) 79, 439, 1097, 1340
Hpy166II GTNNAC 2 cut(s) 114, 912
Hpy188I TCNGA 2 cut(s) 1318, 1342
Hpy188III TCNNGA 7 cut(s) 209, 334, 397, 466, 508, 631, 896
Hpy8I GTNNAC 2 cut(s) 114, 912
Hpy99I CGWCG 1 cut(s) 443
HpyAV CCTTC 3 cut(s) 1075, 1116, 1153
HpyCH4III ACNGT 3 cut(s) 588, 916, 1057
HpyCH4IV ACGT 2 cut(s) 327, 1224
HpyCH4V TGCA 1 cut(s) 81
HpyF10VI GCNNNNNNNGC 5 cut(s) 144, 153, 279, 412, 425
HpyF3I CTNAG 5 cut(s) 455, 671, 1064, 1134, 1315
HpySE526I ACGT 2 cut(s) 327, 1224
Hsp92I GRCGYC 1 cut(s) 441
Hsp92II CATG 2 cut(s) 172, 506
HspAI GCGC 2 cut(s) 4, 857
Kpn2I TCCGGA 1 cut(s) 507
KroI GCCGGC 2 cut(s) 299, 372
KroNI GCCGGC 2 cut(s) 301, 374
Kzo9I GATC 1 cut(s) 360
LmnI GCTCC 2 cut(s) 468, 495
Lsp1109I GCAGC 1 cut(s) 238
LweI GCATC 3 cut(s) 583, 694, 1012
MaeI CTAG 3 cut(s) 606, 1029, 1155
MaeII ACGT 2 cut(s) 327, 1224
MaeIII GTNAC 2 cut(s) 445, 1187
MalI GATC 1 cut(s) 362
MbiI CCGCTC 1 cut(s) 881
MboI GATC 1 cut(s) 360
MboII GAAGA 6 cut(s) 25, 886, 934, 937, 1217, 1242
MflI RGATCY 1 cut(s) 360
MhlI GDGCHC 3 cut(s) 315, 348, 1224
MlyI GAGTC 2 cut(s) 1106, 1331
MmeI TCCRAC 2 cut(s) 501, 1207
MroI TCCGGA 1 cut(s) 507
MroNI GCCGGC 2 cut(s) 299, 372
MseI TTAA 2 cut(s) 14, 753
MspA1I CMGCKG 1 cut(s) 358
MspI CCGG 8 cut(s) 253, 300, 350, 373, 483, 508, 747, 831
MspR9I CCNGG 5 cut(s) 253, 350, 484, 747, 748
Mva1269I GAATGC 1 cut(s) 1252
MvnI CGCG 1 cut(s) 147
MwoI GCNNNNNNNGC 5 cut(s) 144, 153, 279, 412, 425
NaeI GCCGGC 2 cut(s) 301, 374
NciI CCSGG 5 cut(s) 253, 350, 484, 747, 748
NdeII GATC 1 cut(s) 360
NgoMIV GCCGGC 2 cut(s) 299, 372
NlaIII CATG 2 cut(s) 172, 506
NlaIV GGNNCC 2 cut(s) 362, 491
NmeAIII GCCGAG 1 cut(s) 733
NmuCI GTSAC 1 cut(s) 445
NsbI TGCGCA 1 cut(s) 5
NspI RCATGY 1 cut(s) 506
NspV TTCGAA 1 cut(s) 546
PaeR7I CTCGAG 1 cut(s) 497
PcsI WCGNNNNNNNCGW 2 cut(s) 300, 339
PctI GAATGC 1 cut(s) 1252
PdiI GCCGGC 2 cut(s) 301, 374
PfeI GAWTC 3 cut(s) 141, 892, 1036
PflFI GACNNNGTC 1 cut(s) 443
PkrI GCNGC 3 cut(s) 228, 275, 489
PleI GAGTC 2 cut(s) 1105, 1331
PpsI GAGTC 2 cut(s) 1105, 1331
PpuMI RGGWCCY 1 cut(s) 211
PsiI TTATAA 1 cut(s) 1077
Psp5II RGGWCCY 1 cut(s) 211
PspN4I GGNNCC 2 cut(s) 362, 491
PspPI GGNCC 1 cut(s) 211
PspPPI RGGWCCY 1 cut(s) 211
PspXI VCTCGAGB 1 cut(s) 497
PsuI RGATCY 1 cut(s) 360
PsyI GACNNNGTC 1 cut(s) 443
RsaI GTAC 3 cut(s) 617, 767, 1309
RsaNI GTAC 3 cut(s) 616, 766, 1308
SalI GTCGAC 1 cut(s) 112
SaqAI TTAA 2 cut(s) 14, 753
SatI GCNGC 3 cut(s) 227, 274, 488
Sau3AI GATC 1 cut(s) 360
Sau96I GGNCC 1 cut(s) 211
ScaI AGTACT 1 cut(s) 767
SchI GAGTC 2 cut(s) 1106, 1331
ScrFI CCNGG 5 cut(s) 253, 350, 484, 747, 748
SduI GDGCHC 3 cut(s) 315, 348, 1224
SfaNI GCATC 3 cut(s) 583, 694, 1012
SfcI CTRYAG 1 cut(s) 769
Sfr274I CTCGAG 1 cut(s) 497
SfuI TTCGAA 1 cut(s) 546
SinI GGWCC 1 cut(s) 211
SlaI CTCGAG 1 cut(s) 497
SmaI CCCGGG 1 cut(s) 748
SmlI CTYRAG 3 cut(s) 497, 563, 841
SmoI CTYRAG 3 cut(s) 497, 563, 841
SspMI CTAG 3 cut(s) 606, 1029, 1155
StyD4I CCNGG 5 cut(s) 251, 348, 482, 745, 746
StyI CCWWGG 1 cut(s) 1154
TaaI ACNGT 3 cut(s) 588, 916, 1057
TaiI ACGT 2 cut(s) 330, 1227
TaqI TCGA 9 cut(s) 113, 177, 258, 333, 498, 546, 630, 848, 1025
TatI WGTACW 2 cut(s) 615, 765
TauI GCSGC 2 cut(s) 276, 490
TfiI GAWTC 3 cut(s) 141, 892, 1036
Tru1I TTAA 2 cut(s) 14, 753
Tru9I TTAA 2 cut(s) 14, 753
TscAI CASTG 1 cut(s) 1062
TseFI GTSAC 1 cut(s) 445
TseI GCWGC 1 cut(s) 226
Tsp45I GTSAC 1 cut(s) 445
TspDTI ATGAA 3 cut(s) 718, 980, 1040
TspGWI ACGGA 2 cut(s) 792, 804
TspMI CCCGGG 1 cut(s) 746
TspRI CASTG 1 cut(s) 1062
Tth111I GACNNNGTC 1 cut(s) 443
VpaK11BI GGWCC 1 cut(s) 211
XapI RAATTY 4 cut(s) 203, 317, 736, 967
XceI RCATGY 1 cut(s) 506
XhoI CTCGAG 1 cut(s) 497
XmaI CCCGGG 1 cut(s) 746
XmaJI CCTAGG 1 cut(s) 1154
XmiI GTMKAC 1 cut(s) 113
XspI CTAG 3 cut(s) 606, 1029, 1155
ZrmI AGTACT 1 cut(s) 767
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.