AT4G33910
ERF Family

2OG-Fe(II) oxygenase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0010783
Physical Location & Seq
Reverse (-)
16256694 .. 16258974
2281 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G33910.1

Sequence Viewer

Length: 867 bp
ATGAAGAGCAGATTGAAGAGCTACAGGAGGAAGAAGCTAGGGTTAGCCACAGTTATCGTCTTCTGTTCTCTCTGTTTCCTCTTCGGTTTCTATGGCTCCACTCTACTTTCTCAGAATGTGCCTCGTGTTAAACCCAGGTTGAGAATGTTGGATATGGTTGAGAATGGGGAAGAAGAAGCTAGCTCGATGCCTCATGGTGTTACTGGAGAAGAATCTATTGGATCGATTCCTTTTCAGGTACTTAGTTGGAGACCTAGGGCTATATATTTTCCGAATTTTGCAACTGCAGAACAATGCCAAGCTATTATTGAGAGAGCAAAGGTTAATCTGAAACCTTCTGCTTTGGCTCTCCGGAAAGGAGAAACTGCTGAGAACACTAAGGGCACTAGAACAAGCTCAGGAACTTTTATCAGTGCTTCAGAAGAGAGTACTGGTGCTCTGGATTTTGTTGAAAGGAAAATCGCAAGAGCTACGATGATCCCAAGGTCCCATGGAGAGTCATTCAATATTTTACGGTATGAACTTGGCCAAAAGTATGATTCCCACTATGATGTTTTCAACCCAACAGAATATGGACCACAATCAAGCCAAAGGATTGCCTCCTTCCTGTTGTACTTATCTGATGTTGAAGAAGGCGGTGAAACCATGTTCCCATTTGAGAACGGTTCTAATATGGGCATCGGATACGATTACAAGCAATGTATTGGGTTGAAAGTAAAGCCTCGGAAAGGAGATGGTCTTCTTTTTTATTCCGTGTTTCCAAATGGAACGATTGATCAGACTTCGCTTCACGGGAGCTGCCCGGTGACCAAAGGAGAGAAATGGGTGGCAACCAAATGGATCAGAGACCAAGACCAGGAAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko00330 ko01100 map00330 map01100
Pfam Domains
Protein Families
2OG-FeII_Oxy_3

Protein Analysis

288

Amino Acids

32.28

Weight (kDa)

8.49

Isoelectric Point (pI)

38.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 167 - 282 1.6e-07 2OG-Fe(II) oxygenase superfamily
2OG-FeII_Oxy_3 PF13640 169 - 282 5.8e-17 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010783)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G33910
fragaria_vesca FvH4_2g03890 FvH4_2g03890
malus_domestica MD05G1096100.v1.1 MD10G1102300.v1.1
prunus_persica Prupe.8G140500_v2.0.a1
pyrus_communis pycom05g09490 pycom10g08800
rosa_chinensis RchiOBHm_Chr6g0252911
rosa_laevigata RLG00000015049 RLG00000032764
rosa_multiflora Rmu_co8070424.1_g000001 Rmu_sc0000829.1_g000001
rosa_roxburghii Rroxscaffold_7G00212300
rosa_rugosa Rorug05G0540000
rosa_samantha Rh6AG055700 Rh6BG050000 Rh6CG048400 Rh6DG044000
rosa_wichuraiana Rw6G005040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 351
AciI CCGC 1 cut(s) 636
AclWI GGATC 3 cut(s) 229, 472, 848
AcoI YGGCCR 1 cut(s) 526
AcsI RAATTY 1 cut(s) 274
AcuI CTGAAG 1 cut(s) 402
AfaI GTAC 3 cut(s) 240, 430, 614
AfiI CCNNNNNNNGG 2 cut(s) 728, 856
AgsI TTSAA 6 cut(s) 16, 452, 505, 559, 629, 712
AjnI CCWGG 2 cut(s) 134, 855
AjuI GAANNNNNNNTTGG 2 cut(s) 201, 233
AluBI AGCT 8 cut(s) 21, 37, 179, 183, 302, 396, 470, 798
AluI AGCT 8 cut(s) 21, 37, 179, 183, 302, 396, 470, 798
Alw21I GWGCWC 1 cut(s) 439
Alw26I GTCTC 2 cut(s) 244, 840
AlwI GGATC 3 cut(s) 229, 472, 848
Aor13HI TCCGGA 1 cut(s) 351
AoxI GGCC 1 cut(s) 526
ApeKI GCWGC 1 cut(s) 798
ApoI RAATTY 1 cut(s) 274
AspA2I CCTAGG 1 cut(s) 254
AspS9I GGNCC 2 cut(s) 486, 575
AsuC2I CCSGG 1 cut(s) 803
AsuHPI GGTGA 2 cut(s) 650, 817
AsuNHI GCTAGC 1 cut(s) 179
AvaII GGWCC 2 cut(s) 486, 575
AvrII CCTAGG 1 cut(s) 254
BaeGI GKGCMC 1 cut(s) 386
BalI TGGCCA 1 cut(s) 528
BauI CACGAG 1 cut(s) 123
BbsI GAAGAC 2 cut(s) 52, 731
Bbv12I GWGCWC 1 cut(s) 439
BbvI GCAGC 1 cut(s) 785
BccI CCATC 1 cut(s) 728
BciT130I CCWGG 2 cut(s) 136, 857
BciVI GTATCC 1 cut(s) 677
BclI TGATCA 1 cut(s) 775
BcnI CCSGG 1 cut(s) 803
BcoDI GTCTC 2 cut(s) 244, 840
BfaI CTAG 4 cut(s) 38, 180, 255, 387
BfmI CTRYAG 2 cut(s) 22, 285
BfuI GTATCC 1 cut(s) 677
BisI GCNGC 1 cut(s) 799
BlnI CCTAGG 1 cut(s) 254
BlsI GCNGC 1 cut(s) 800
BmcAI AGTACT 1 cut(s) 430
Bme1390I CCNGG 3 cut(s) 136, 803, 857
Bme18I GGWCC 2 cut(s) 486, 575
BmgT120I GGNCC 2 cut(s) 486, 575
BmiI GGNNCC 2 cut(s) 97, 488
BmrFI CCNGG 3 cut(s) 136, 803, 857
BmsI GCATC 2 cut(s) 177, 687
BmtI GCTAGC 1 cut(s) 183
BpiI GAAGAC 2 cut(s) 52, 731
BpmI CTGGAG 1 cut(s) 225
Bpu10I CCTNAGC 1 cut(s) 397
BpuMI CCSGG 1 cut(s) 803
Bsa29I ATCGAT 1 cut(s) 224
BsaI GGTCTC 2 cut(s) 244, 840
BsaJI CCNNGG 5 cut(s) 134, 254, 482, 490, 722
BsaWI WCCGGW 1 cut(s) 351
Bsc4I CCNNNNNNNGG 2 cut(s) 728, 856
Bse1I ACTGG 2 cut(s) 208, 436
Bse3DI GCAATG 1 cut(s) 704
BseAI TCCGGA 1 cut(s) 351
BseBI CCWGG 2 cut(s) 136, 857
BseCI ATCGAT 1 cut(s) 224
BseDI CCNNGG 5 cut(s) 134, 254, 482, 490, 722
BseLI CCNNNNNNNGG 2 cut(s) 728, 856
BseMI GCAATG 1 cut(s) 704
BseMII CTCAG 3 cut(s) 125, 360, 411
BseNI ACTGG 2 cut(s) 208, 436
BseSI GKGCMC 1 cut(s) 386
BseXI GCAGC 1 cut(s) 785
BshFI GGCC 1 cut(s) 528
BshVI ATCGAT 1 cut(s) 224
BsiHKAI GWGCWC 1 cut(s) 439
BsiSI CCGG 2 cut(s) 352, 803
BslFI GGGAC 1 cut(s) 472
BslI CCNNNNNNNGG 2 cut(s) 728, 856
BsmAI GTCTC 2 cut(s) 244, 840
BsmFI GGGAC 1 cut(s) 472
BsnI GGCC 1 cut(s) 528
Bso31I GGTCTC 2 cut(s) 244, 840
Bsp1286I GDGCHC 2 cut(s) 386, 439
Bsp13I TCCGGA 1 cut(s) 351
Bsp143I GATC 4 cut(s) 221, 477, 775, 840
Bsp19I CCATGG 1 cut(s) 490
BspACI CCGC 1 cut(s) 636
BspANI GGCC 1 cut(s) 528
BspCNI CTCAG 3 cut(s) 124, 361, 410
BspDI ATCGAT 1 cut(s) 224
BspEI TCCGGA 1 cut(s) 351
BspLI GGNNCC 2 cut(s) 97, 488
BspMAI CTGCAG 1 cut(s) 289
BspOI GCTAGC 1 cut(s) 183
BspPI GGATC 3 cut(s) 229, 472, 848
BspQI GCTCTTC 1 cut(s) 11
BspTNI GGTCTC 2 cut(s) 244, 840
BsrDI GCAATG 1 cut(s) 704
BsrI ACTGG 2 cut(s) 208, 436
BssECI CCNNGG 5 cut(s) 134, 254, 482, 490, 722
BssMI GATC 4 cut(s) 221, 477, 775, 840
BssSI CACGAG 1 cut(s) 123
BssT1I CCWWGG 3 cut(s) 254, 482, 490
Bst2BI CACGAG 1 cut(s) 123
Bst2UI CCWGG 2 cut(s) 136, 857
Bst4CI ACNGT 3 cut(s) 52, 516, 665
Bst6I CTCTTC 3 cut(s) 11, 86, 417
BstC8I GCNNGC 1 cut(s) 181
BstDEI CTNAG 5 cut(s) 111, 242, 369, 378, 397
BstDSI CCRYGG 1 cut(s) 490
BstEII GGTNACC 1 cut(s) 805
BstENI CCTNNNNNAGG 1 cut(s) 726
BstKTI GATC 4 cut(s) 224, 480, 778, 843
BstMAI GTCTC 2 cut(s) 244, 840
BstMBI GATC 4 cut(s) 221, 477, 775, 840
BstNI CCWGG 2 cut(s) 136, 857
BstPI GGTNACC 1 cut(s) 805
BstSCI CCNGG 3 cut(s) 134, 801, 855
BstSFI CTRYAG 2 cut(s) 22, 285
BstSLI GKGCMC 1 cut(s) 386
BstV1I GCAGC 1 cut(s) 785
BstV2I GAAGAC 2 cut(s) 52, 731
Bsu15I ATCGAT 1 cut(s) 224
BsuI GTATCC 1 cut(s) 677
BsuRI GGCC 1 cut(s) 528
BsuTUI ATCGAT 1 cut(s) 224
BtgI CCRYGG 1 cut(s) 490
BtsIMutI CAGTG 1 cut(s) 418
Cac8I GCNNGC 1 cut(s) 181
Cfr13I GGNCC 2 cut(s) 486, 575
ClaI ATCGAT 1 cut(s) 224
Csp6I GTAC 3 cut(s) 239, 429, 613
CviAII CATG 3 cut(s) 194, 491, 646
CviQI GTAC 3 cut(s) 239, 429, 613
DdeI CTNAG 5 cut(s) 111, 242, 369, 378, 397
DpnI GATC 4 cut(s) 223, 479, 777, 842
DpnII GATC 4 cut(s) 221, 477, 775, 840
EaeI YGGCCR 1 cut(s) 526
Eam1104I CTCTTC 3 cut(s) 11, 86, 417
EarI CTCTTC 3 cut(s) 11, 86, 417
Eco130I CCWWGG 3 cut(s) 254, 482, 490
Eco31I GGTCTC 2 cut(s) 244, 840
Eco47I GGWCC 2 cut(s) 486, 575
Eco57I CTGAAG 1 cut(s) 402
Eco91I GGTNACC 1 cut(s) 805
EcoNI CCTNNNNNAGG 1 cut(s) 726
EcoO109I RGGNCCY 1 cut(s) 486
EcoO65I GGTNACC 1 cut(s) 805
EcoRII CCWGG 2 cut(s) 134, 855
EcoT14I CCWWGG 3 cut(s) 254, 482, 490
ErhI CCWWGG 3 cut(s) 254, 482, 490
FaeI CATG 3 cut(s) 197, 494, 649
FaqI GGGAC 1 cut(s) 472
FatI CATG 3 cut(s) 193, 490, 645
FbaI TGATCA 1 cut(s) 775
Fnu4HI GCNGC 1 cut(s) 799
Fsp4HI GCNGC 1 cut(s) 799
FspBI CTAG 4 cut(s) 38, 180, 255, 387
GluI GCNGC 1 cut(s) 799
GsuI CTGGAG 1 cut(s) 225
HaeIII GGCC 1 cut(s) 528
HapII CCGG 2 cut(s) 352, 803
Hin1II CATG 3 cut(s) 197, 494, 649
HinfI GANTC 4 cut(s) 212, 226, 497, 539
HpaII CCGG 2 cut(s) 352, 803
HphI GGTGA 2 cut(s) 650, 817
Hpy188I TCNGA 9 cut(s) 114, 273, 330, 421, 622, 683, 726, 780, 845
Hpy188III TCNNGA 3 cut(s) 352, 399, 440
HpyAV CCTTC 3 cut(s) 345, 613, 626
HpyCH4III ACNGT 3 cut(s) 52, 516, 665
HpyCH4V TGCA 2 cut(s) 281, 287
HpyF3I CTNAG 5 cut(s) 111, 242, 369, 378, 397
Hsp92II CATG 3 cut(s) 197, 494, 649
Kpn2I TCCGGA 1 cut(s) 351
Ksp22I TGATCA 1 cut(s) 775
Kzo9I GATC 4 cut(s) 221, 477, 775, 840
LguI GCTCTTC 1 cut(s) 11
LmnI GCTCC 2 cut(s) 101, 795
Lsp1109I GCAGC 1 cut(s) 785
LweI GCATC 2 cut(s) 177, 687
MaeI CTAG 4 cut(s) 38, 180, 255, 387
MaeIII GTNAC 2 cut(s) 199, 805
MalI GATC 4 cut(s) 223, 479, 777, 842
MboI GATC 4 cut(s) 221, 477, 775, 840
MhlI GDGCHC 2 cut(s) 386, 439
MlsI TGGCCA 1 cut(s) 528
MluCI AATT 1 cut(s) 274
MluNI TGGCCA 1 cut(s) 528
MlyI GAGTC 1 cut(s) 506
MmeI TCCRAC 2 cut(s) 129, 227
MnlI CCTC 6 cut(s) 21, 89, 132, 201, 610, 732
Mox20I TGGCCA 1 cut(s) 528
MroI TCCGGA 1 cut(s) 351
MscI TGGCCA 1 cut(s) 528
MseI TTAA 2 cut(s) 129, 324
MslI CAYNNNNRTG 1 cut(s) 549
Msp20I TGGCCA 1 cut(s) 528
MspI CCGG 2 cut(s) 352, 803
MspR9I CCNGG 3 cut(s) 136, 803, 857
MvaI CCWGG 2 cut(s) 136, 857
NciI CCSGG 1 cut(s) 803
NcoI CCATGG 1 cut(s) 490
NdeII GATC 4 cut(s) 221, 477, 775, 840
NheI GCTAGC 1 cut(s) 179
NlaIII CATG 3 cut(s) 197, 494, 649
NlaIV GGNNCC 2 cut(s) 97, 488
NmuCI GTSAC 1 cut(s) 805
PciSI GCTCTTC 1 cut(s) 11
PfeI GAWTC 3 cut(s) 212, 226, 539
PkrI GCNGC 1 cut(s) 800
PleI GAGTC 1 cut(s) 505
PpsI GAGTC 1 cut(s) 505
PpuMI RGGWCCY 1 cut(s) 486
Psp5II RGGWCCY 1 cut(s) 486
Psp6I CCWGG 2 cut(s) 134, 855
PspEI GGTNACC 1 cut(s) 805
PspGI CCWGG 2 cut(s) 134, 855
PspN4I GGNNCC 2 cut(s) 97, 488
PspPI GGNCC 2 cut(s) 486, 575
PspPPI RGGWCCY 1 cut(s) 486
PstI CTGCAG 1 cut(s) 289
RsaI GTAC 3 cut(s) 240, 430, 614
RsaNI GTAC 3 cut(s) 239, 429, 613
RseI CAYNNNNRTG 1 cut(s) 549
SapI GCTCTTC 1 cut(s) 11
SaqAI TTAA 2 cut(s) 129, 324
SatI GCNGC 1 cut(s) 799
Sau3AI GATC 4 cut(s) 221, 477, 775, 840
Sau96I GGNCC 2 cut(s) 486, 575
ScaI AGTACT 1 cut(s) 430
SchI GAGTC 1 cut(s) 506
ScrFI CCNGG 3 cut(s) 136, 803, 857
SduI GDGCHC 2 cut(s) 386, 439
SfaNI GCATC 2 cut(s) 177, 687
SfcI CTRYAG 2 cut(s) 22, 285
SinI GGWCC 2 cut(s) 486, 575
SmiMI CAYNNNNRTG 1 cut(s) 549
Sse9I AATT 1 cut(s) 274
SsiI CCGC 1 cut(s) 636
SspI AATATT 1 cut(s) 508
SspMI CTAG 4 cut(s) 38, 180, 255, 387
StyD4I CCNGG 3 cut(s) 134, 801, 855
StyI CCWWGG 3 cut(s) 254, 482, 490
TaaI ACNGT 3 cut(s) 52, 516, 665
TaqI TCGA 2 cut(s) 185, 224
TasI AATT 1 cut(s) 274
TatI WGTACW 2 cut(s) 428, 612
TfiI GAWTC 3 cut(s) 212, 226, 539
Tru1I TTAA 2 cut(s) 129, 324
Tru9I TTAA 2 cut(s) 129, 324
TscAI CASTG 1 cut(s) 418
TseFI GTSAC 1 cut(s) 805
TseI GCWGC 1 cut(s) 798
Tsp45I GTSAC 1 cut(s) 805
TspDTI ATGAA 2 cut(s) 17, 534
TspGWI ACGGA 1 cut(s) 742
TspRI CASTG 1 cut(s) 418
VpaK11BI GGWCC 2 cut(s) 486, 575
XagI CCTNNNNNAGG 1 cut(s) 726
XapI RAATTY 1 cut(s) 274
XmaJI CCTAGG 1 cut(s) 254
XspI CTAG 4 cut(s) 38, 180, 255, 387
ZrmI AGTACT 1 cut(s) 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.