Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0010783

Physical Location & Seq

Genomic Coordinates Forward (+)

3090485 .. 3094737

Gene Structure 4253 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g03890.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGAAACTCAAACCCAAAAGCCCCAAACCAAAGCTGGGGCTCCTCACCATCCTCCTCCTCTGTTTCCTCTGCTTCATTGCCGGCCTCTTCACCTCCACCGTCCTCTCTCAGCTCTCCGCTCCTCAGTTACTCTCCGGCCCACGCTCCTCTTCTAGAATGCTCGAATCCGACAAGGACGGAGATCACGGCCCAATGCTCCCCGGTGAGACCGGAGAGAGCTTCATCGGGTCGATCCCGTTTCAGGTGCTGAGCTGGAAGCCGAGGGCGGTTTACTTTCCGGGATTTGCGACGGCGGAGCAATGTGAGAGTGTGATCAGAGCGGCCAAGGCGAAGCTGAGGCCGTCGACGTTAGCTTTGAGGAAAGGAGAGACTGTTGAGAGTACCAAGGGGACCAGAACAAGTTCAGGTACATTTATCAGTGCATCAGAAGACGAGACCGGAGTCCTAGATATTATTGAGCAAAAGATTGCCAGGGCTACAATGTTTCCAAGGGACCATGGAGAGGCATTCAATATATTGCGGTATGAGATTGGCCAGAAGTATGATTCTCATTATGATGCGTTCAACCCAGATGAATATGGCCAACAGCAAAGCCAAAGATTTTCACAAAATAACACTCAATTTTGCAGTTCGCTTCATTTTTGTTGTATCTATCGGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

2OG-FeII_Oxy_3

Protein Analysis

221

Amino Acids

24.43

Weight (kDa)

8.5

Isoelectric Point (pI)

39.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33910
fragaria_vesca	FvH4_2g03890 FvH4_2g03890
malus_domestica	MD05G1096100.v1.1 MD10G1102300.v1.1
prunus_persica	Prupe.8G140500_v2.0.a1
pyrus_communis	pycom05g09490 pycom10g08800
rosa_chinensis	RchiOBHm_Chr6g0252911
rosa_laevigata	RLG00000015049 RLG00000032764
rosa_multiflora	Rmu_co8070424.1_g000001 Rmu_sc0000829.1_g000001
rosa_roxburghii	Rroxscaffold_7G00212300
rosa_rugosa	Rorug05G0540000
rosa_samantha	Rh6AG055700 Rh6BG050000 Rh6CG048400 Rh6DG044000
rosa_wichuraiana	Rw6G005040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	119, 320
AccI	GTMKAC	1 cut(s)	344
AciI	CCGC	5 cut(s)	117, 266, 293, 320, 520
AclWI	GGATC	1 cut(s)	226
AcoI	YGGCCR	3 cut(s)	321, 532, 580
AfaI	GTAC	2 cut(s)	382, 409
AfiI	CCNNNNNNNGG	3 cut(s)	35, 241, 502
AgsI	TTSAA	2 cut(s)	511, 565
AjnI	CCWGG	1 cut(s)	470
AluBI	AGCT	6 cut(s)	34, 112, 219, 252, 334, 353
AluI	AGCT	6 cut(s)	34, 112, 219, 252, 334, 353
Alw26I	GTCTC	3 cut(s)	200, 362, 428
AlwI	GGATC	1 cut(s)	226
AlwNI	CAGNNNCTG	1 cut(s)	247
AoxI	GGCC	7 cut(s)	82, 136, 187, 321, 338, 532, 580
ArsI	GACNNNNNNTTYG	2 cut(s)	337, 369
Asp700I	GAANNNNTTC	1 cut(s)	400
AspS9I	GGNCC	4 cut(s)	137, 188, 390, 493
AsuC2I	CCSGG	2 cut(s)	201, 279
AsuHPI	GGTGA	3 cut(s)	37, 82, 215
AvaII	GGWCC	2 cut(s)	390, 493
BalI	TGGCCA	2 cut(s)	534, 582
BanII	GRGCYC	1 cut(s)	42
BbsI	GAAGAC	1 cut(s)	435
BbvCI	CCTCAGC	1 cut(s)	335
BccI	CCATC	1 cut(s)	56
BceAI	ACGGC	3 cut(s)	202, 306, 325
BciT130I	CCWGG	1 cut(s)	472
BclI	TGATCA	1 cut(s)	312
BcnI	CCSGG	2 cut(s)	201, 279
BcoDI	GTCTC	3 cut(s)	200, 362, 428
BfaI	CTAG	2 cut(s)	153, 446
BisI	GCNGC	1 cut(s)	321
BlpI	GCTNAGC	1 cut(s)	248
BlsI	GCNGC	1 cut(s)	322
Bme1390I	CCNGG	3 cut(s)	201, 279, 472
Bme18I	GGWCC	2 cut(s)	390, 493
BmgT120I	GGNCC	4 cut(s)	137, 188, 390, 493
BmiI	GGNNCC	3 cut(s)	41, 391, 494
BmrFI	CCNGG	3 cut(s)	201, 279, 472
BmsI	GCATC	2 cut(s)	431, 547
BoxI	GACNNNNGTC	1 cut(s)	440
BpiI	GAAGAC	1 cut(s)	435
Bpu10I	CCTNAGC	1 cut(s)	335
Bpu1102I	GCTNAGC	1 cut(s)	248
BpuMI	CCSGG	2 cut(s)	201, 279
BsaI	GGTCTC	2 cut(s)	200, 428
BsaJI	CCNNGG	7 cut(s)	199, 260, 324, 384, 471, 488, 496
BsaWI	WCCGGW	2 cut(s)	209, 437
BsaXI	ACNNNNNCTCC	2 cut(s)	357, 387
Bsc4I	CCNNNNNNNGG	3 cut(s)	35, 241, 502
Bse118I	RCCGGY	1 cut(s)	80
Bse3DI	GCAATG	2 cut(s)	75, 305
BseBI	CCWGG	1 cut(s)	472
BseDI	CCNNGG	7 cut(s)	199, 260, 324, 384, 471, 488, 496
BseGI	GGATG	2 cut(s)	48, 663
BseLI	CCNNNNNNNGG	3 cut(s)	35, 241, 502
BseMI	GCAATG	2 cut(s)	75, 305
BseMII	CTCAG	4 cut(s)	122, 137, 239, 326
BseRI	GAGGAG	5 cut(s)	32, 44, 47, 111, 136
BseYI	CCCAGC	1 cut(s)	34
BshFI	GGCC	7 cut(s)	84, 138, 189, 323, 340, 534, 582
BsiSI	CCGG	6 cut(s)	81, 135, 201, 210, 278, 438
BslFI	GGGAC	2 cut(s)	403, 506
BslI	CCNNNNNNNGG	3 cut(s)	35, 241, 502
BsmAI	GTCTC	3 cut(s)	200, 362, 428
BsmFI	GGGAC	2 cut(s)	403, 506
BsmI	GAATGC	2 cut(s)	162, 506
BsnI	GGCC	7 cut(s)	84, 138, 189, 323, 340, 534, 582
Bso31I	GGTCTC	2 cut(s)	200, 428
Bsp1286I	GDGCHC	1 cut(s)	42
Bsp143I	GATC	3 cut(s)	181, 231, 312
Bsp1720I	GCTNAGC	1 cut(s)	248
Bsp19I	CCATGG	1 cut(s)	496
BspACI	CCGC	5 cut(s)	117, 266, 293, 320, 520
BspANI	GGCC	7 cut(s)	84, 138, 189, 323, 340, 534, 582
BspCNI	CTCAG	4 cut(s)	121, 136, 240, 327
BspLI	GGNNCC	3 cut(s)	41, 391, 494
BspPI	GGATC	1 cut(s)	226
BspTNI	GGTCTC	2 cut(s)	200, 428
BsrBI	CCGCTC	2 cut(s)	119, 320
BsrDI	GCAATG	2 cut(s)	75, 305
BsrFI	RCCGGY	1 cut(s)	80
BssAI	RCCGGY	1 cut(s)	80
BssECI	CCNNGG	7 cut(s)	199, 260, 324, 384, 471, 488, 496
BssMI	GATC	3 cut(s)	181, 231, 312
BssT1I	CCWWGG	4 cut(s)	324, 384, 488, 496
Bst2UI	CCWGG	1 cut(s)	472
Bst4CI	ACNGT	2 cut(s)	100, 373
Bst6I	CTCTTC	2 cut(s)	92, 154
BstC8I	GCNNGC	1 cut(s)	82
BstDEI	CTNAG	4 cut(s)	108, 123, 248, 335
BstDSI	CCRYGG	1 cut(s)	496
BstF5I	GGATG	2 cut(s)	48, 663
BstKTI	GATC	3 cut(s)	184, 234, 315
BstMAI	GTCTC	3 cut(s)	200, 362, 428
BstMBI	GATC	3 cut(s)	181, 231, 312
BstMWI	GCNNNNNNNGC	1 cut(s)	326
BstNI	CCWGG	1 cut(s)	472
BstPAI	GACNNNNGTC	1 cut(s)	440
BstSCI	CCNGG	3 cut(s)	199, 277, 470
BstV2I	GAAGAC	1 cut(s)	435
BsuRI	GGCC	7 cut(s)	84, 138, 189, 323, 340, 534, 582
BtgI	CCRYGG	1 cut(s)	496
BtsCI	GGATG	2 cut(s)	48, 663
BtsIMutI	CAGTG	1 cut(s)	424
Cac8I	GCNNGC	1 cut(s)	82
CaiI	CAGNNNCTG	1 cut(s)	247
Cfr10I	RCCGGY	1 cut(s)	80
Cfr13I	GGNCC	4 cut(s)	137, 188, 390, 493
Csp6I	GTAC	2 cut(s)	381, 408
CviAII	CATG	1 cut(s)	497
CviQI	GTAC	2 cut(s)	381, 408
DdeI	CTNAG	4 cut(s)	108, 123, 248, 335
DpnI	GATC	3 cut(s)	183, 233, 314
DpnII	GATC	3 cut(s)	181, 231, 312
EaeI	YGGCCR	3 cut(s)	321, 532, 580
Eam1104I	CTCTTC	2 cut(s)	92, 154
EarI	CTCTTC	2 cut(s)	92, 154
EciI	GGCGGA	1 cut(s)	308
Eco130I	CCWWGG	4 cut(s)	324, 384, 488, 496
Eco24I	GRGCYC	1 cut(s)	42
Eco31I	GGTCTC	2 cut(s)	200, 428
Eco47I	GGWCC	2 cut(s)	390, 493
EcoRII	CCWGG	1 cut(s)	470
EcoT14I	CCWWGG	4 cut(s)	324, 384, 488, 496
EcoT38I	GRGCYC	1 cut(s)	42
ErhI	CCWWGG	4 cut(s)	324, 384, 488, 496
FaeI	CATG	1 cut(s)	500
FaiI	YATR	6 cut(s)	498, 515, 525, 543, 555, 579
FaqI	GGGAC	2 cut(s)	403, 506
FatI	CATG	1 cut(s)	496
FbaI	TGATCA	1 cut(s)	312
FblI	GTMKAC	1 cut(s)	344
Fnu4HI	GCNGC	1 cut(s)	321
FokI	GGATG	1 cut(s)	35
FriOI	GRGCYC	1 cut(s)	42
Fsp4HI	GCNGC	1 cut(s)	321
FspBI	CTAG	2 cut(s)	153, 446
GluI	GCNGC	1 cut(s)	321
GsaI	CCCAGC	1 cut(s)	38
HaeIII	GGCC	7 cut(s)	84, 138, 189, 323, 340, 534, 582
HapII	CCGG	6 cut(s)	81, 135, 201, 210, 278, 438
Hin1II	CATG	1 cut(s)	500
HincII	GTYRAC	1 cut(s)	345
HindII	GTYRAC	1 cut(s)	345
HinfI	GANTC	3 cut(s)	164, 441, 545
HpaII	CCGG	6 cut(s)	81, 135, 201, 210, 278, 438
HphI	GGTGA	3 cut(s)	37, 82, 215
Hpy166II	GTNNAC	2 cut(s)	271, 345
Hpy188I	TCNGA	4 cut(s)	169, 317, 427, 657
Hpy188III	TCNNGA	1 cut(s)	153
Hpy8I	GTNNAC	2 cut(s)	271, 345
Hpy99I	CGWCG	3 cut(s)	292, 346, 349
HpyCH4III	ACNGT	2 cut(s)	100, 373
HpyCH4IV	ACGT	1 cut(s)	347
HpyCH4V	TGCA	2 cut(s)	422, 627
HpyF10VI	GCNNNNNNNGC	1 cut(s)	326
HpyF3I	CTNAG	4 cut(s)	108, 123, 248, 335
HpySE526I	ACGT	1 cut(s)	347
Hsp92II	CATG	1 cut(s)	500
KroI	GCCGGC	1 cut(s)	80
KroNI	GCCGGC	1 cut(s)	82
Ksp22I	TGATCA	1 cut(s)	312
Kzo9I	GATC	3 cut(s)	181, 231, 312
LmnI	GCTCC	5 cut(s)	45, 124, 149, 201, 295
LweI	GCATC	2 cut(s)	431, 547
MaeI	CTAG	2 cut(s)	153, 446
MaeII	ACGT	1 cut(s)	347
MaeIII	GTNAC	1 cut(s)	126
MalI	GATC	3 cut(s)	183, 233, 314
MbiI	CCGCTC	2 cut(s)	119, 320
MboI	GATC	3 cut(s)	181, 231, 312
MboII	GAAGA	3 cut(s)	79, 141, 440
MhlI	GDGCHC	1 cut(s)	42
MlsI	TGGCCA	2 cut(s)	534, 582
MluCI	AATT	1 cut(s)	620
MluNI	TGGCCA	2 cut(s)	534, 582
MlyI	GAGTC	1 cut(s)	450
MmeI	TCCRAC	1 cut(s)	192
Mox20I	TGGCCA	2 cut(s)	534, 582
MroNI	GCCGGC	1 cut(s)	80
MroXI	GAANNNNTTC	1 cut(s)	400
MscI	TGGCCA	2 cut(s)	534, 582
MslI	CAYNNNNRTG	1 cut(s)	555
Msp20I	TGGCCA	2 cut(s)	534, 582
MspI	CCGG	6 cut(s)	81, 135, 201, 210, 278, 438
MspR9I	CCNGG	3 cut(s)	201, 279, 472
Mva1269I	GAATGC	2 cut(s)	162, 506
MvaI	CCWGG	1 cut(s)	472
MwoI	GCNNNNNNNGC	1 cut(s)	326
NaeI	GCCGGC	1 cut(s)	82
NciI	CCSGG	2 cut(s)	201, 279
NcoI	CCATGG	1 cut(s)	496
NdeII	GATC	3 cut(s)	181, 231, 312
NgoMIV	GCCGGC	1 cut(s)	80
NlaIII	CATG	1 cut(s)	500
NlaIV	GGNNCC	3 cut(s)	41, 391, 494
NmeAIII	GCCGAG	1 cut(s)	285
PctI	GAATGC	2 cut(s)	162, 506
PdiI	GCCGGC	1 cut(s)	82
PdmI	GAANNNNTTC	1 cut(s)	400
PfeI	GAWTC	2 cut(s)	164, 545
PfoI	TCCNGGA	1 cut(s)	277
PkrI	GCNGC	1 cut(s)	322
PleI	GAGTC	1 cut(s)	449
PpsI	GAGTC	1 cut(s)	449
PshAI	GACNNNNGTC	1 cut(s)	440
Psp6I	CCWGG	1 cut(s)	470
PspFI	CCCAGC	1 cut(s)	34
PspGI	CCWGG	1 cut(s)	470
PspN4I	GGNNCC	3 cut(s)	41, 391, 494
PspPI	GGNCC	4 cut(s)	137, 188, 390, 493
PstNI	CAGNNNCTG	1 cut(s)	247
RsaI	GTAC	2 cut(s)	382, 409
RsaNI	GTAC	2 cut(s)	381, 408
RseI	CAYNNNNRTG	1 cut(s)	555
SalI	GTCGAC	1 cut(s)	343
SatI	GCNGC	1 cut(s)	321
Sau3AI	GATC	3 cut(s)	181, 231, 312
Sau96I	GGNCC	4 cut(s)	137, 188, 390, 493
SchI	GAGTC	1 cut(s)	450
ScrFI	CCNGG	3 cut(s)	201, 279, 472
SduI	GDGCHC	1 cut(s)	42
SfaNI	GCATC	2 cut(s)	431, 547
SgrDI	CGTCGACG	1 cut(s)	343
SinI	GGWCC	2 cut(s)	390, 493
SmiMI	CAYNNNNRTG	1 cut(s)	555
Sse9I	AATT	1 cut(s)	620
SsiI	CCGC	5 cut(s)	117, 266, 293, 320, 520
SspMI	CTAG	2 cut(s)	153, 446
StyD4I	CCNGG	3 cut(s)	199, 277, 470
StyI	CCWWGG	4 cut(s)	324, 384, 488, 496
TaaI	ACNGT	2 cut(s)	100, 373
TaiI	ACGT	1 cut(s)	350
TaqI	TCGA	3 cut(s)	162, 230, 344
TasI	AATT	1 cut(s)	620
TauI	GCSGC	1 cut(s)	323
TfiI	GAWTC	2 cut(s)	164, 545
TscAI	CASTG	1 cut(s)	424
TspDTI	ATGAA	5 cut(s)	17, 64, 211, 588, 626
TspGWI	ACGGA	1 cut(s)	192
TspRI	CASTG	1 cut(s)	424
VpaK11BI	GGWCC	2 cut(s)	390, 493
XbaI	TCTAGA	1 cut(s)	152
XcmI	CCANNNNNNNNNTGG	1 cut(s)	31
XmiI	GTMKAC	1 cut(s)	344
XmnI	GAANNNNTTC	1 cut(s)	400
XspI	CTAG	2 cut(s)	153, 446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.