Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0010783

Physical Location & Seq

Genomic Coordinates Forward (+)

8246930 .. 8251034

Gene Structure 4105 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG055700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGTCACTTCTATATATGCTAGTGTCAAGTTATATGTACTATATGTATTTTTTGCTCACAGTTAATCGTCATTTGGATTTTTTTATTTTATATATAGTAGCTGAGCTTTTATATAGGACATTTTGGCTGCTTGTGACATTGACTCTGTATTCTAAACGTGTTTATAGTTCAGGGACCTTTATCAGTGCATCAGAAGATGAGACTGGAGTCCTGGATATTATTGAACAAAAGATTGCCCGGGCTACGATGTTACCAAGGGACCATGGAGAGGCATTCAATATATTGCGGTATGACATTGGCCAGAAGTATGATTCTCATTATGATGCGTTCAACCCAGATGAATATGGCCCACAGCAAAGCCAAAGATTTGCTTCATTTTTGCTGTATCTATCTAATGTAGAAGAAGGTGGAGAAACAATGTTTCCTTTCGAGAACGGTTCAAATATGGATATTAGATACGATTACAAGAAATGCATTGGTCTAAAAGTTAAGCCAAGGCAAGGGGATGGGCTTTTATTTTATTCGGTGCTTCCAAATGGCACAATTGATCAGACATCTCTTCATGGAAGCTGCCCAGTGATCAGAGGGGAGAAATGGGTGGCAACAAAGTGGATTAGAAATCAAGAAGAGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

2OG-FeII_Oxy_3

Protein Analysis

211

Amino Acids

24.62

Weight (kDa)

5.28

Isoelectric Point (pI)

53.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	92 - 206	2.6e-06	2OG-Fe(II) oxygenase superfamily
2OG-FeII_Oxy_3	PF13640	93 - 206	9.1e-16	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0010783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33910
fragaria_vesca	FvH4_2g03890 FvH4_2g03890
malus_domestica	MD05G1096100.v1.1 MD10G1102300.v1.1
prunus_persica	Prupe.8G140500_v2.0.a1
pyrus_communis	pycom05g09490 pycom10g08800
rosa_chinensis	RchiOBHm_Chr6g0252911
rosa_laevigata	RLG00000015049 RLG00000032764
rosa_multiflora	Rmu_co8070424.1_g000001 Rmu_sc0000829.1_g000001
rosa_roxburghii	Rroxscaffold_7G00212300
rosa_rugosa	Rorug05G0540000
rosa_samantha	Rh6AG055700 Rh6BG050000 Rh6CG048400 Rh6DG044000
rosa_wichuraiana	Rw6G005040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	286
AcoI	YGGCCR	1 cut(s)	298
AfaI	GTAC	1 cut(s)	38
AfiI	CCNNNNNNNGG	2 cut(s)	268, 500
AflIII	ACRYGT	1 cut(s)	157
AgsI	TTSAA	4 cut(s)	224, 277, 331, 441
AjnI	CCWGG	1 cut(s)	210
AluBI	AGCT	3 cut(s)	101, 106, 570
AluI	AGCT	3 cut(s)	101, 106, 570
Alw26I	GTCTC	1 cut(s)	194
Ama87I	CYCGRG	1 cut(s)	237
AoxI	GGCC	2 cut(s)	298, 346
ApeKI	GCWGC	2 cut(s)	127, 570
AspS9I	GGNCC	3 cut(s)	174, 259, 347
AsuC2I	CCSGG	2 cut(s)	238, 239
AvaI	CYCGRG	1 cut(s)	237
AvaII	GGWCC	2 cut(s)	174, 259
BalI	TGGCCA	1 cut(s)	300
BbvI	GCAGC	2 cut(s)	114, 557
BccI	CCATC	1 cut(s)	500
BciT130I	CCWGG	1 cut(s)	212
BclI	TGATCA	2 cut(s)	547, 579
BcnI	CCSGG	2 cut(s)	238, 239
BcoDI	GTCTC	1 cut(s)	194
BfaI	CTAG	1 cut(s)	20
BisI	GCNGC	2 cut(s)	128, 571
BlpI	GCTNAGC	1 cut(s)	102
BlsI	GCNGC	2 cut(s)	129, 572
Bme1390I	CCNGG	3 cut(s)	212, 238, 239
Bme18I	GGWCC	2 cut(s)	174, 259
BmeT110I	CYCGRG	1 cut(s)	237
BmgT120I	GGNCC	3 cut(s)	174, 259, 347
BmiI	GGNNCC	2 cut(s)	175, 260
BmrFI	CCNGG	3 cut(s)	212, 238, 239
BmrI	ACTGGG	1 cut(s)	569
BmsI	GCATC	2 cut(s)	197, 313
BmuI	ACTGGG	1 cut(s)	569
BoxI	GACNNNNGTC	1 cut(s)	206
BpmI	CTGGAG	1 cut(s)	225
Bpu1102I	GCTNAGC	1 cut(s)	102
BpuMI	CCSGG	2 cut(s)	238, 239
BsaJI	CCNNGG	4 cut(s)	237, 254, 262, 494
Bsc4I	CCNNNNNNNGG	2 cut(s)	268, 500
Bse1I	ACTGG	2 cut(s)	208, 575
BseBI	CCWGG	1 cut(s)	212
BseDI	CCNNGG	4 cut(s)	237, 254, 262, 494
BseGI	GGATG	1 cut(s)	511
BseLI	CCNNNNNNNGG	2 cut(s)	268, 500
BseMII	CTCAG	1 cut(s)	93
BseNI	ACTGG	2 cut(s)	208, 575
BseXI	GCAGC	2 cut(s)	114, 557
BshFI	GGCC	2 cut(s)	300, 348
BsiHKCI	CYCGRG	1 cut(s)	237
BsiSI	CCGG	1 cut(s)	238
BslFI	GGGAC	2 cut(s)	187, 272
BslI	CCNNNNNNNGG	2 cut(s)	268, 500
BsmAI	GTCTC	1 cut(s)	194
BsmFI	GGGAC	2 cut(s)	187, 272
BsmI	GAATGC	1 cut(s)	272
BsnI	GGCC	2 cut(s)	300, 348
BsoBI	CYCGRG	1 cut(s)	237
Bsp143I	GATC	2 cut(s)	547, 579
Bsp1720I	GCTNAGC	1 cut(s)	102
Bsp19I	CCATGG	1 cut(s)	262
BspACI	CCGC	1 cut(s)	286
BspANI	GGCC	2 cut(s)	300, 348
BspCNI	CTCAG	1 cut(s)	94
BspLI	GGNNCC	2 cut(s)	175, 260
BsrI	ACTGG	2 cut(s)	208, 575
BssECI	CCNNGG	4 cut(s)	237, 254, 262, 494
BssMI	GATC	2 cut(s)	547, 579
BssT1I	CCWWGG	3 cut(s)	254, 262, 494
Bst2UI	CCWGG	1 cut(s)	212
Bst4CI	ACNGT	2 cut(s)	61, 437
Bst6I	CTCTTC	2 cut(s)	564, 621
BstDEI	CTNAG	1 cut(s)	102
BstDSI	CCRYGG	1 cut(s)	262
BstF5I	GGATG	1 cut(s)	511
BstKTI	GATC	2 cut(s)	550, 582
BstMAI	GTCTC	1 cut(s)	194
BstMBI	GATC	2 cut(s)	547, 579
BstNI	CCWGG	1 cut(s)	212
BstPAI	GACNNNNGTC	1 cut(s)	206
BstSCI	CCNGG	3 cut(s)	210, 236, 237
BstV1I	GCAGC	2 cut(s)	114, 557
BsuRI	GGCC	2 cut(s)	300, 348
BtgI	CCRYGG	1 cut(s)	262
BtsCI	GGATG	1 cut(s)	511
BtsIMutI	CAGTG	2 cut(s)	190, 582
Cfr13I	GGNCC	3 cut(s)	174, 259, 347
Cfr9I	CCCGGG	1 cut(s)	237
Csp6I	GTAC	1 cut(s)	37
CviAII	CATG	2 cut(s)	263, 563
CviQI	GTAC	1 cut(s)	37
DdeI	CTNAG	1 cut(s)	102
DpnI	GATC	2 cut(s)	549, 581
DpnII	GATC	2 cut(s)	547, 579
EaeI	YGGCCR	1 cut(s)	298
Eam1104I	CTCTTC	2 cut(s)	564, 621
EarI	CTCTTC	2 cut(s)	564, 621
Eco130I	CCWWGG	3 cut(s)	254, 262, 494
Eco47I	GGWCC	2 cut(s)	174, 259
Eco88I	CYCGRG	1 cut(s)	237
EcoO109I	RGGNCCY	1 cut(s)	174
EcoRII	CCWGG	1 cut(s)	210
EcoT14I	CCWWGG	3 cut(s)	254, 262, 494
EcoT22I	ATGCAT	1 cut(s)	476
ErhI	CCWWGG	3 cut(s)	254, 262, 494
FaeI	CATG	2 cut(s)	266, 566
FalI	AAGNNNNNCTT	2 cut(s)	355, 387
FaqI	GGGAC	2 cut(s)	187, 272
FatI	CATG	2 cut(s)	262, 562
FbaI	TGATCA	2 cut(s)	547, 579
Fnu4HI	GCNGC	2 cut(s)	128, 571
FokI	GGATG	1 cut(s)	518
Fsp4HI	GCNGC	2 cut(s)	128, 571
FspBI	CTAG	1 cut(s)	20
GluI	GCNGC	2 cut(s)	128, 571
GsuI	CTGGAG	1 cut(s)	225
HaeIII	GGCC	2 cut(s)	300, 348
HapII	CCGG	1 cut(s)	238
Hin1II	CATG	2 cut(s)	266, 566
HinfI	GANTC	3 cut(s)	142, 207, 311
HpaII	CCGG	1 cut(s)	238
Hpy188I	TCNGA	3 cut(s)	193, 552, 584
Hpy188III	TCNNGA	2 cut(s)	430, 623
HpyAV	CCTTC	1 cut(s)	398
HpyCH4III	ACNGT	2 cut(s)	61, 437
HpyCH4IV	ACGT	1 cut(s)	157
HpyCH4V	TGCA	2 cut(s)	188, 474
HpyF3I	CTNAG	1 cut(s)	102
HpySE526I	ACGT	1 cut(s)	157
Hsp92II	CATG	2 cut(s)	266, 566
Ksp22I	TGATCA	2 cut(s)	547, 579
Kzo9I	GATC	2 cut(s)	547, 579
LpnPI	CCDG	8 cut(s)	156, 189, 197, 224, 251, 314, 348, 588
Lsp1109I	GCAGC	2 cut(s)	114, 557
LweI	GCATC	2 cut(s)	197, 313
MaeI	CTAG	1 cut(s)	20
MaeII	ACGT	1 cut(s)	157
MaeIII	GTNAC	3 cut(s)	3, 133, 249
MalI	GATC	2 cut(s)	549, 581
MboI	GATC	2 cut(s)	547, 579
MboII	GAAGA	3 cut(s)	206, 413, 551
MfeI	CAATTG	1 cut(s)	543
MlsI	TGGCCA	1 cut(s)	300
MluCI	AATT	1 cut(s)	543
MluNI	TGGCCA	1 cut(s)	300
MlyI	GAGTC	2 cut(s)	136, 216
MnlI	CCTC	3 cut(s)	262, 578, 622
Mox20I	TGGCCA	1 cut(s)	300
Mph1103I	ATGCAT	1 cut(s)	476
MscI	TGGCCA	1 cut(s)	300
MseI	TTAA	2 cut(s)	63, 489
MslI	CAYNNNNRTG	1 cut(s)	321
Msp20I	TGGCCA	1 cut(s)	300
MspI	CCGG	1 cut(s)	238
MspR9I	CCNGG	3 cut(s)	212, 238, 239
MunI	CAATTG	1 cut(s)	543
Mva1269I	GAATGC	1 cut(s)	272
MvaI	CCWGG	1 cut(s)	212
NciI	CCSGG	2 cut(s)	238, 239
NcoI	CCATGG	1 cut(s)	262
NdeII	GATC	2 cut(s)	547, 579
NlaIII	CATG	2 cut(s)	266, 566
NlaIV	GGNNCC	2 cut(s)	175, 260
NmuCI	GTSAC	2 cut(s)	3, 133
NsiI	ATGCAT	1 cut(s)	476
PctI	GAATGC	1 cut(s)	272
PfeI	GAWTC	1 cut(s)	311
PfoI	TCCNGGA	1 cut(s)	210
PkrI	GCNGC	2 cut(s)	129, 572
PleI	GAGTC	2 cut(s)	136, 215
PpsI	GAGTC	2 cut(s)	136, 215
PpuMI	RGGWCCY	1 cut(s)	174
PshAI	GACNNNNGTC	1 cut(s)	206
Psp5II	RGGWCCY	1 cut(s)	174
Psp6I	CCWGG	1 cut(s)	210
PspGI	CCWGG	1 cut(s)	210
PspN4I	GGNNCC	2 cut(s)	175, 260
PspPI	GGNCC	3 cut(s)	174, 259, 347
PspPPI	RGGWCCY	1 cut(s)	174
RsaI	GTAC	1 cut(s)	38
RsaNI	GTAC	1 cut(s)	37
RseI	CAYNNNNRTG	1 cut(s)	321
SaqAI	TTAA	2 cut(s)	63, 489
SatI	GCNGC	2 cut(s)	128, 571
Sau3AI	GATC	2 cut(s)	547, 579
Sau96I	GGNCC	3 cut(s)	174, 259, 347
SchI	GAGTC	2 cut(s)	136, 216
ScrFI	CCNGG	3 cut(s)	212, 238, 239
SetI	ASST	6 cut(s)	103, 108, 160, 179, 409, 572
SfaNI	GCATC	2 cut(s)	197, 313
SinI	GGWCC	2 cut(s)	174, 259
SmaI	CCCGGG	1 cut(s)	239
SmiMI	CAYNNNNRTG	1 cut(s)	321
SrfI	GCCCGGGC	1 cut(s)	239
Sse9I	AATT	1 cut(s)	543
SsiI	CCGC	1 cut(s)	286
SspMI	CTAG	1 cut(s)	20
StyD4I	CCNGG	3 cut(s)	210, 236, 237
StyI	CCWWGG	3 cut(s)	254, 262, 494
TaaI	ACNGT	2 cut(s)	61, 437
TaiI	ACGT	1 cut(s)	160
TaqI	TCGA	1 cut(s)	429
TasI	AATT	1 cut(s)	543
TatI	WGTACW	1 cut(s)	36
TfiI	GAWTC	1 cut(s)	311
Tru1I	TTAA	2 cut(s)	63, 489
Tru9I	TTAA	2 cut(s)	63, 489
TscAI	CASTG	2 cut(s)	190, 582
TseFI	GTSAC	2 cut(s)	3, 133
TseI	GCWGC	2 cut(s)	127, 570
Tsp45I	GTSAC	2 cut(s)	3, 133
TspDTI	ATGAA	3 cut(s)	354, 363, 551
TspMI	CCCGGG	1 cut(s)	237
TspRI	CASTG	2 cut(s)	190, 582
VpaK11BI	GGWCC	2 cut(s)	174, 259
XmaI	CCCGGG	1 cut(s)	237
XspI	CTAG	1 cut(s)	20
Zsp2I	ATGCAT	1 cut(s)	476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.