Rh6BG050000

Prolyl 4-hydroxylase alpha subunit homologues.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0010783
Physical Location & Seq
Forward (+)
8157969 .. 8162192
4224 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG050000.1

Sequence Viewer

Length: 633 bp
ATGAAACTGAAAGCAAAAGCCCCCAAAGCAAAGTTGGGGCTACCCACCATCGTCCTCCTCTGTTTCCTCTGCTTCATTGCCGGCCTTTTCACCTCCACCCTCCTCTCCCAGGTCTCCGTCCCTCAATTCCTCTCCGGTCCGCGGTCGGGTTCTAGAATACTCGAATCGGAGGATGAAGATCACGGTCCAATGCTGCCCGGGGAGACCGGAGAGAGCTTCATTGCGCCGATTCCGTTCCAGGTGCTGAGTTGGAAGCCGCGGGCGCTTTATTTTCCGAGATTTGCGACTGCGGAGCAATGTGAGAGTGTGATCAAGAGGGCCAAGGCTAAGCTGAGGCCTTCGACGTTGGCTTTGAGGAAAGGAGAGACTGTTGAGAGCACAAAGGGGACTAGAACAAGTTCAGGGACCTTTATCAGTGCATCAGAAGATGAGACTGGAGTCCTGGATATTATTGAGCAAAAGATTGCCCGGGCTACGATGTTACCAAGGGACCATGGAGAGGCATTCAATATATTGCGGTATGACATTGGCCAGAAGTATGATTCTCATTATGATGCGTTCAACCCAGATGAATATGGCCCACAGCAAAGCCAAAGAGTAATAATCCTGTACTTTCATCCTAAATATATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko00330 ko01100 map00330 map01100
Pfam Domains
Protein Families
2OG-FeII_Oxy_3

Protein Analysis

210

Amino Acids

23.42

Weight (kDa)

8.7

Isoelectric Point (pI)

47.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010783)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G33910
fragaria_vesca FvH4_2g03890 FvH4_2g03890
malus_domestica MD05G1096100.v1.1 MD10G1102300.v1.1
prunus_persica Prupe.8G140500_v2.0.a1
pyrus_communis pycom05g09490 pycom10g08800
rosa_chinensis RchiOBHm_Chr6g0252911
rosa_laevigata RLG00000015049 RLG00000032764
rosa_multiflora Rmu_co8070424.1_g000001 Rmu_sc0000829.1_g000001
rosa_roxburghii Rroxscaffold_7G00212300
rosa_rugosa Rorug05G0540000
rosa_samantha Rh6AG055700 Rh6BG050000 Rh6CG048400 Rh6DG044000
rosa_wichuraiana Rw6G005040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 142, 259
AciI CCGC 6 cut(s) 140, 142, 257, 259, 290, 517
AcoI YGGCCR 1 cut(s) 529
AfaI GTAC 1 cut(s) 611
AfiI CCNNNNNNNGG 4 cut(s) 109, 141, 146, 499
AgsI TTSAA 2 cut(s) 508, 562
AjnI CCWGG 3 cut(s) 108, 237, 441
AluBI AGCT 2 cut(s) 216, 331
AluI AGCT 2 cut(s) 216, 331
Alw21I GWGCWC 1 cut(s) 380
Alw26I GTCTC 4 cut(s) 118, 197, 359, 425
AlwNI CAGNNNCTG 1 cut(s) 244
Ama87I CYCGRG 2 cut(s) 197, 468
AoxI GGCC 5 cut(s) 82, 318, 335, 529, 577
ApeKI GCWGC 1 cut(s) 193
ArsI GACNNNNNNTTYG 2 cut(s) 334, 366
Asp700I GAANNNNTTC 1 cut(s) 397
AspLEI GCGC 2 cut(s) 226, 265
AspS9I GGNCC 6 cut(s) 137, 185, 318, 405, 490, 578
AsuC2I CCSGG 4 cut(s) 198, 199, 469, 470
AsuHPI GGTGA 1 cut(s) 82
AvaI CYCGRG 2 cut(s) 197, 468
AvaII GGWCC 4 cut(s) 137, 185, 405, 490
BalI TGGCCA 1 cut(s) 531
Bbv12I GWGCWC 1 cut(s) 380
BbvCI CCTCAGC 1 cut(s) 332
BbvI GCAGC 1 cut(s) 180
BccI CCATC 1 cut(s) 56
BciT130I CCWGG 3 cut(s) 110, 239, 443
BclI TGATCA 1 cut(s) 309
BcnI CCSGG 4 cut(s) 198, 199, 469, 470
BcoDI GTCTC 4 cut(s) 118, 197, 359, 425
BfaI CTAG 2 cut(s) 153, 390
BfoI RGCGCY 1 cut(s) 266
BisI GCNGC 2 cut(s) 194, 257
BlpI GCTNAGC 1 cut(s) 327
BlsI GCNGC 2 cut(s) 195, 258
Bme1390I CCNGG 7 cut(s) 110, 198, 199, 239, 443, 469, 470
Bme18I GGWCC 4 cut(s) 137, 185, 405, 490
BmeT110I CYCGRG 2 cut(s) 197, 468
BmgT120I GGNCC 6 cut(s) 137, 185, 318, 405, 490, 578
BmiI GGNNCC 2 cut(s) 406, 491
BmrFI CCNGG 7 cut(s) 110, 198, 199, 239, 443, 469, 470
BmsI GCATC 2 cut(s) 428, 544
BoxI GACNNNNGTC 1 cut(s) 437
BpmI CTGGAG 1 cut(s) 456
Bpu10I CCTNAGC 1 cut(s) 332
Bpu1102I GCTNAGC 1 cut(s) 327
BpuMI CCSGG 4 cut(s) 198, 199, 469, 470
BsaBI GATNNNNATC 1 cut(s) 177
BsaI GGTCTC 2 cut(s) 118, 197
BsaJI CCNNGG 9 cut(s) 108, 140, 197, 198, 257, 321, 468, 485, 493
BsaWI WCCGGW 2 cut(s) 134, 206
BsaXI ACNNNNNCTCC 2 cut(s) 354, 384
Bsc4I CCNNNNNNNGG 4 cut(s) 109, 141, 146, 499
Bse118I RCCGGY 1 cut(s) 80
Bse1I ACTGG 1 cut(s) 439
Bse3DI GCAATG 3 cut(s) 75, 219, 302
Bse8I GATNNNNATC 1 cut(s) 177
BseBI CCWGG 3 cut(s) 110, 239, 443
BseDI CCNNGG 9 cut(s) 108, 140, 197, 198, 257, 321, 468, 485, 493
BseGI GGATG 2 cut(s) 178, 616
BseJI GATNNNNATC 1 cut(s) 177
BseLI CCNNNNNNNGG 4 cut(s) 109, 141, 146, 499
BseMI GCAATG 3 cut(s) 75, 219, 302
BseMII CTCAG 2 cut(s) 236, 323
BseNI ACTGG 1 cut(s) 439
BseRI GAGGAG 2 cut(s) 47, 92
BseXI GCAGC 1 cut(s) 180
Bsh1236I CGCG 2 cut(s) 142, 259
Bsh1285I CGRYCG 1 cut(s) 146
BshFI GGCC 5 cut(s) 84, 320, 337, 531, 579
BsiEI CGRYCG 1 cut(s) 146
BsiHKAI GWGCWC 1 cut(s) 380
BsiHKCI CYCGRG 2 cut(s) 197, 468
BsiSI CCGG 5 cut(s) 81, 135, 198, 207, 469
BslFI GGGAC 4 cut(s) 104, 400, 418, 503
BslI CCNNNNNNNGG 4 cut(s) 109, 141, 146, 499
BsmAI GTCTC 4 cut(s) 118, 197, 359, 425
BsmFI GGGAC 4 cut(s) 104, 400, 418, 503
BsmI GAATGC 1 cut(s) 503
BsnI GGCC 5 cut(s) 84, 320, 337, 531, 579
Bso31I GGTCTC 2 cut(s) 118, 197
BsoBI CYCGRG 2 cut(s) 197, 468
Bsp1286I GDGCHC 1 cut(s) 380
Bsp143I GATC 2 cut(s) 178, 309
Bsp1720I GCTNAGC 1 cut(s) 327
Bsp19I CCATGG 1 cut(s) 493
BspACI CCGC 6 cut(s) 140, 142, 257, 259, 290, 517
BspANI GGCC 5 cut(s) 84, 320, 337, 531, 579
BspCNI CTCAG 2 cut(s) 237, 324
BspFNI CGCG 2 cut(s) 142, 259
BspLI GGNNCC 2 cut(s) 406, 491
BspTNI GGTCTC 2 cut(s) 118, 197
BsrDI GCAATG 3 cut(s) 75, 219, 302
BsrFI RCCGGY 1 cut(s) 80
BsrI ACTGG 1 cut(s) 439
BssAI RCCGGY 1 cut(s) 80
BssECI CCNNGG 9 cut(s) 108, 140, 197, 198, 257, 321, 468, 485, 493
BssMI GATC 2 cut(s) 178, 309
BssT1I CCWWGG 3 cut(s) 321, 485, 493
Bst2UI CCWGG 3 cut(s) 110, 239, 443
Bst4CI ACNGT 2 cut(s) 185, 370
BstC8I GCNNGC 2 cut(s) 82, 261
BstDEI CTNAG 3 cut(s) 245, 327, 332
BstDSI CCRYGG 3 cut(s) 140, 257, 493
BstENI CCTNNNNNAGG 1 cut(s) 107
BstF5I GGATG 2 cut(s) 178, 616
BstFNI CGCG 2 cut(s) 142, 259
BstH2I RGCGCY 1 cut(s) 266
BstHHI GCGC 2 cut(s) 226, 265
BstKTI GATC 2 cut(s) 181, 312
BstMAI GTCTC 4 cut(s) 118, 197, 359, 425
BstMBI GATC 2 cut(s) 178, 309
BstMCI CGRYCG 1 cut(s) 146
BstMWI GCNNNNNNNGC 2 cut(s) 26, 262
BstNI CCWGG 3 cut(s) 110, 239, 443
BstPAI GACNNNNGTC 1 cut(s) 437
BstSCI CCNGG 7 cut(s) 108, 196, 197, 237, 441, 467, 468
BstUI CGCG 2 cut(s) 142, 259
BstV1I GCAGC 1 cut(s) 180
BsuRI GGCC 5 cut(s) 84, 320, 337, 531, 579
BtgI CCRYGG 3 cut(s) 140, 257, 493
BtsCI GGATG 2 cut(s) 178, 616
BtsIMutI CAGTG 1 cut(s) 421
Cac8I GCNNGC 2 cut(s) 82, 261
CaiI CAGNNNCTG 1 cut(s) 244
CfoI GCGC 2 cut(s) 226, 265
Cfr10I RCCGGY 1 cut(s) 80
Cfr13I GGNCC 6 cut(s) 137, 185, 318, 405, 490, 578
Cfr42I CCGCGG 2 cut(s) 143, 260
Cfr9I CCCGGG 2 cut(s) 197, 468
CpoI CGGWCCG 1 cut(s) 137
Csp6I GTAC 1 cut(s) 610
CspI CGGWCCG 1 cut(s) 137
CviAII CATG 1 cut(s) 494
CviQI GTAC 1 cut(s) 610
DdeI CTNAG 3 cut(s) 245, 327, 332
DpnI GATC 2 cut(s) 180, 311
DpnII GATC 2 cut(s) 178, 309
EaeI YGGCCR 1 cut(s) 529
Eco130I CCWWGG 3 cut(s) 321, 485, 493
Eco147I AGGCCT 1 cut(s) 337
Eco31I GGTCTC 2 cut(s) 118, 197
Eco47I GGWCC 4 cut(s) 137, 185, 405, 490
Eco88I CYCGRG 2 cut(s) 197, 468
EcoNI CCTNNNNNAGG 1 cut(s) 107
EcoO109I RGGNCCY 1 cut(s) 405
EcoRII CCWGG 3 cut(s) 108, 237, 441
EcoT14I CCWWGG 3 cut(s) 321, 485, 493
ErhI CCWWGG 3 cut(s) 321, 485, 493
FaeI CATG 1 cut(s) 497
FaiI YATR 8 cut(s) 495, 512, 522, 540, 552, 576, 627, 629
FaqI GGGAC 4 cut(s) 104, 400, 418, 503
FatI CATG 1 cut(s) 493
FauI CCCGC 1 cut(s) 252
FbaI TGATCA 1 cut(s) 309
Fnu4HI GCNGC 2 cut(s) 194, 257
FokI GGATG 2 cut(s) 185, 603
Fsp4HI GCNGC 2 cut(s) 194, 257
FspBI CTAG 2 cut(s) 153, 390
GlaI GCGC 2 cut(s) 225, 264
GluI GCNGC 2 cut(s) 194, 257
GsuI CTGGAG 1 cut(s) 456
HaeII RGCGCY 1 cut(s) 266
HaeIII GGCC 5 cut(s) 84, 320, 337, 531, 579
HapII CCGG 5 cut(s) 81, 135, 198, 207, 469
HhaI GCGC 2 cut(s) 226, 265
Hin1II CATG 1 cut(s) 497
Hin6I GCGC 2 cut(s) 224, 263
HinP1I GCGC 2 cut(s) 224, 263
HinfI GANTC 4 cut(s) 164, 229, 438, 542
HpaII CCGG 5 cut(s) 81, 135, 198, 207, 469
HphI GGTGA 1 cut(s) 82
Hpy188I TCNGA 3 cut(s) 169, 276, 424
Hpy188III TCNNGA 2 cut(s) 153, 313
Hpy99I CGWCG 1 cut(s) 346
HpyAV CCTTC 1 cut(s) 348
HpyCH4III ACNGT 2 cut(s) 185, 370
HpyCH4IV ACGT 1 cut(s) 344
HpyCH4V TGCA 1 cut(s) 419
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 262
HpyF3I CTNAG 3 cut(s) 245, 327, 332
HpySE526I ACGT 1 cut(s) 344
Hsp92II CATG 1 cut(s) 497
HspAI GCGC 2 cut(s) 224, 263
KroI GCCGGC 1 cut(s) 80
KroNI GCCGGC 1 cut(s) 82
Ksp22I TGATCA 1 cut(s) 309
KspI CCGCGG 2 cut(s) 143, 260
Kzo9I GATC 2 cut(s) 178, 309
LmnI GCTCC 1 cut(s) 292
Lsp1109I GCAGC 1 cut(s) 180
LweI GCATC 2 cut(s) 428, 544
MaeI CTAG 2 cut(s) 153, 390
MaeII ACGT 1 cut(s) 344
MaeIII GTNAC 1 cut(s) 480
MalI GATC 2 cut(s) 180, 311
MboI GATC 2 cut(s) 178, 309
MboII GAAGA 2 cut(s) 188, 437
MhlI GDGCHC 1 cut(s) 380
MlsI TGGCCA 1 cut(s) 531
MluCI AATT 1 cut(s) 125
MluNI TGGCCA 1 cut(s) 531
MlyI GAGTC 1 cut(s) 447
MmeI TCCRAC 1 cut(s) 230
Mox20I TGGCCA 1 cut(s) 531
MroNI GCCGGC 1 cut(s) 80
MroXI GAANNNNTTC 1 cut(s) 397
MscI TGGCCA 1 cut(s) 531
MslI CAYNNNNRTG 1 cut(s) 552
Msp20I TGGCCA 1 cut(s) 531
MspA1I CMGCKG 2 cut(s) 142, 259
MspI CCGG 5 cut(s) 81, 135, 198, 207, 469
MspR9I CCNGG 7 cut(s) 110, 198, 199, 239, 443, 469, 470
Mva1269I GAATGC 1 cut(s) 503
MvaI CCWGG 3 cut(s) 110, 239, 443
MvnI CGCG 2 cut(s) 142, 259
MwoI GCNNNNNNNGC 2 cut(s) 26, 262
NaeI GCCGGC 1 cut(s) 82
NciI CCSGG 4 cut(s) 198, 199, 469, 470
NcoI CCATGG 1 cut(s) 493
NdeII GATC 2 cut(s) 178, 309
NgoMIV GCCGGC 1 cut(s) 80
NlaIII CATG 1 cut(s) 497
NlaIV GGNNCC 2 cut(s) 406, 491
PceI AGGCCT 1 cut(s) 337
PctI GAATGC 1 cut(s) 503
PdiI GCCGGC 1 cut(s) 82
PdmI GAANNNNTTC 1 cut(s) 397
PfeI GAWTC 3 cut(s) 164, 229, 542
PfoI TCCNGGA 1 cut(s) 441
PkrI GCNGC 2 cut(s) 195, 258
PleI GAGTC 1 cut(s) 446
PpsI GAGTC 1 cut(s) 446
PpuMI RGGWCCY 1 cut(s) 405
PshAI GACNNNNGTC 1 cut(s) 437
Psp5II RGGWCCY 1 cut(s) 405
Psp6I CCWGG 3 cut(s) 108, 237, 441
PspGI CCWGG 3 cut(s) 108, 237, 441
PspN4I GGNNCC 2 cut(s) 406, 491
PspPI GGNCC 6 cut(s) 137, 185, 318, 405, 490, 578
PspPPI RGGWCCY 1 cut(s) 405
PstNI CAGNNNCTG 1 cut(s) 244
RsaI GTAC 1 cut(s) 611
RsaNI GTAC 1 cut(s) 610
RseI CAYNNNNRTG 1 cut(s) 552
Rsr2I CGGWCCG 1 cut(s) 137
RsrII CGGWCCG 1 cut(s) 137
SacII CCGCGG 2 cut(s) 143, 260
SatI GCNGC 2 cut(s) 194, 257
Sau3AI GATC 2 cut(s) 178, 309
Sau96I GGNCC 6 cut(s) 137, 185, 318, 405, 490, 578
SchI GAGTC 1 cut(s) 447
ScrFI CCNGG 7 cut(s) 110, 198, 199, 239, 443, 469, 470
SduI GDGCHC 1 cut(s) 380
SetI ASST 7 cut(s) 95, 114, 218, 243, 333, 347, 410
SfaNI GCATC 2 cut(s) 428, 544
Sfr303I CCGCGG 2 cut(s) 143, 260
SgrBI CCGCGG 2 cut(s) 143, 260
SinI GGWCC 4 cut(s) 137, 185, 405, 490
SmaI CCCGGG 2 cut(s) 199, 470
SmiMI CAYNNNNRTG 1 cut(s) 552
SrfI GCCCGGGC 1 cut(s) 470
Sse9I AATT 1 cut(s) 125
SseBI AGGCCT 1 cut(s) 337
SsiI CCGC 6 cut(s) 140, 142, 257, 259, 290, 517
SspMI CTAG 2 cut(s) 153, 390
StuI AGGCCT 1 cut(s) 337
StyD4I CCNGG 7 cut(s) 108, 196, 197, 237, 441, 467, 468
StyI CCWWGG 3 cut(s) 321, 485, 493
TaaI ACNGT 2 cut(s) 185, 370
TaiI ACGT 1 cut(s) 347
TaqI TCGA 2 cut(s) 162, 341
TasI AATT 1 cut(s) 125
TatI WGTACW 1 cut(s) 609
TauI GCSGC 1 cut(s) 259
TfiI GAWTC 3 cut(s) 164, 229, 542
TscAI CASTG 1 cut(s) 421
TseI GCWGC 1 cut(s) 193
TspDTI ATGAA 6 cut(s) 17, 64, 189, 208, 585, 605
TspGWI ACGGA 2 cut(s) 106, 222
TspMI CCCGGG 2 cut(s) 197, 468
TspRI CASTG 1 cut(s) 421
VpaK11BI GGWCC 4 cut(s) 137, 185, 405, 490
XagI CCTNNNNNAGG 1 cut(s) 107
XbaI TCTAGA 1 cut(s) 152
XcmI CCANNNNNNNNNTGG 1 cut(s) 31
XmaI CCCGGG 2 cut(s) 197, 468
XmnI GAANNNNTTC 1 cut(s) 397
XspI CTAG 2 cut(s) 153, 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.