Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000829.1

Orthogroup ID

OG0010783

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1906

Gene Structure 1906 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000829.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 398 bp

atgaaactgaaagcaaaagcccccaaagcaaagttggggctacccaccatcgtcctcctctgtttcctctgcttcattgccggccttttcacctccaccctcctctccccggtctccgtccctcaattcctctccggtccgcggtcgagttctagaatactcgaatcggaggatgaagatcacggtccaatgctgcccggggagaccggagagagcttcattgcgtcgattccgttccaggtgttgagttggaagccgcgggcgctttattttccgaggtttgcgactgcggagcaatgtgagagtgtgatcaagagggccaaggctaagctcaggccttccacgttggctttgaggaaaggagagactgttgagagcacaaaggggactagaacaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

2OG-FeII_Oxy_3

Protein Analysis

132

Amino Acids

14.42

Weight (kDa)

9.76

Isoelectric Point (pI)

40.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33910
fragaria_vesca	FvH4_2g03890 FvH4_2g03890
malus_domestica	MD05G1096100.v1.1 MD10G1102300.v1.1
prunus_persica	Prupe.8G140500_v2.0.a1
pyrus_communis	pycom05g09490 pycom10g08800
rosa_chinensis	RchiOBHm_Chr6g0252911
rosa_laevigata	RLG00000015049 RLG00000032764
rosa_multiflora	Rmu_co8070424.1_g000001 Rmu_sc0000829.1_g000001
rosa_roxburghii	Rroxscaffold_7G00212300
rosa_rugosa	Rorug05G0540000
rosa_samantha	Rh6AG055700 Rh6BG050000 Rh6CG048400 Rh6DG044000
rosa_wichuraiana	Rw6G005040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	142, 259
AciI	CCGC	5 cut(s)	140, 142, 257, 259, 290
AfiI	CCNNNNNNNGG	2 cut(s)	109, 141
AjnI	CCWGG	1 cut(s)	237
AluBI	AGCT	2 cut(s)	216, 331
AluI	AGCT	2 cut(s)	216, 331
Alw21I	GWGCWC	1 cut(s)	380
Alw26I	GTCTC	3 cut(s)	118, 197, 359
Ama87I	CYCGRG	1 cut(s)	197
AoxI	GGCC	3 cut(s)	82, 318, 335
ApeKI	GCWGC	1 cut(s)	193
AspLEI	GCGC	1 cut(s)	265
AspS9I	GGNCC	3 cut(s)	137, 185, 318
AsuC2I	CCSGG	3 cut(s)	110, 198, 199
AsuHPI	GGTGA	1 cut(s)	82
AvaI	CYCGRG	1 cut(s)	197
AvaII	GGWCC	2 cut(s)	137, 185
Bbv12I	GWGCWC	1 cut(s)	380
BbvI	GCAGC	1 cut(s)	180
BccI	CCATC	1 cut(s)	56
BciT130I	CCWGG	1 cut(s)	239
BclI	TGATCA	1 cut(s)	309
BcnI	CCSGG	3 cut(s)	110, 198, 199
BcoDI	GTCTC	3 cut(s)	118, 197, 359
BfaI	CTAG	2 cut(s)	153, 390
BfoI	RGCGCY	1 cut(s)	266
BisI	GCNGC	2 cut(s)	194, 257
BlpI	GCTNAGC	1 cut(s)	327
BlsI	GCNGC	2 cut(s)	195, 258
Bme1390I	CCNGG	4 cut(s)	110, 198, 199, 239
Bme18I	GGWCC	2 cut(s)	137, 185
BmeT110I	CYCGRG	1 cut(s)	197
BmgT120I	GGNCC	3 cut(s)	137, 185, 318
BmrFI	CCNGG	4 cut(s)	110, 198, 199, 239
Bpu10I	CCTNAGC	1 cut(s)	332
Bpu1102I	GCTNAGC	1 cut(s)	327
BpuMI	CCSGG	3 cut(s)	110, 198, 199
BsaBI	GATNNNNATC	1 cut(s)	177
BsaI	GGTCTC	2 cut(s)	118, 197
BsaJI	CCNNGG	7 cut(s)	108, 140, 197, 198, 257, 275, 321
BsaWI	WCCGGW	2 cut(s)	134, 206
BsaXI	ACNNNNNCTCC	2 cut(s)	354, 384
Bsc4I	CCNNNNNNNGG	2 cut(s)	109, 141
Bse118I	RCCGGY	1 cut(s)	80
Bse3DI	GCAATG	3 cut(s)	75, 219, 302
Bse8I	GATNNNNATC	1 cut(s)	177
BseBI	CCWGG	1 cut(s)	239
BseDI	CCNNGG	7 cut(s)	108, 140, 197, 198, 257, 275, 321
BseGI	GGATG	1 cut(s)	178
BseJI	GATNNNNATC	1 cut(s)	177
BseLI	CCNNNNNNNGG	2 cut(s)	109, 141
BseMI	GCAATG	3 cut(s)	75, 219, 302
BseMII	CTCAG	1 cut(s)	346
BseRI	GAGGAG	2 cut(s)	47, 92
BseXI	GCAGC	1 cut(s)	180
Bsh1236I	CGCG	2 cut(s)	142, 259
Bsh1285I	CGRYCG	1 cut(s)	146
BshFI	GGCC	3 cut(s)	84, 320, 337
BsiEI	CGRYCG	1 cut(s)	146
BsiHKAI	GWGCWC	1 cut(s)	380
BsiHKCI	CYCGRG	1 cut(s)	197
BsiSI	CCGG	5 cut(s)	81, 110, 135, 198, 207
BslFI	GGGAC	1 cut(s)	104
BslI	CCNNNNNNNGG	2 cut(s)	109, 141
BsmAI	GTCTC	3 cut(s)	118, 197, 359
BsmFI	GGGAC	1 cut(s)	104
BsnI	GGCC	3 cut(s)	84, 320, 337
Bso31I	GGTCTC	2 cut(s)	118, 197
BsoBI	CYCGRG	1 cut(s)	197
Bsp1286I	GDGCHC	1 cut(s)	380
Bsp143I	GATC	2 cut(s)	178, 309
Bsp1720I	GCTNAGC	1 cut(s)	327
BspACI	CCGC	5 cut(s)	140, 142, 257, 259, 290
BspANI	GGCC	3 cut(s)	84, 320, 337
BspCNI	CTCAG	1 cut(s)	345
BspFNI	CGCG	2 cut(s)	142, 259
BspTNI	GGTCTC	2 cut(s)	118, 197
BsrDI	GCAATG	3 cut(s)	75, 219, 302
BsrFI	RCCGGY	1 cut(s)	80
BssAI	RCCGGY	1 cut(s)	80
BssECI	CCNNGG	7 cut(s)	108, 140, 197, 198, 257, 275, 321
BssMI	GATC	2 cut(s)	178, 309
BssT1I	CCWWGG	1 cut(s)	321
Bst2UI	CCWGG	1 cut(s)	239
Bst4CI	ACNGT	2 cut(s)	185, 370
BstC8I	GCNNGC	2 cut(s)	82, 261
BstDEI	CTNAG	2 cut(s)	327, 332
BstDSI	CCRYGG	2 cut(s)	140, 257
BstF5I	GGATG	1 cut(s)	178
BstFNI	CGCG	2 cut(s)	142, 259
BstH2I	RGCGCY	1 cut(s)	266
BstHHI	GCGC	1 cut(s)	265
BstKTI	GATC	2 cut(s)	181, 312
BstMAI	GTCTC	3 cut(s)	118, 197, 359
BstMBI	GATC	2 cut(s)	178, 309
BstMCI	CGRYCG	1 cut(s)	146
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 262
BstNI	CCWGG	1 cut(s)	239
BstSCI	CCNGG	4 cut(s)	108, 196, 197, 237
BstUI	CGCG	2 cut(s)	142, 259
BstV1I	GCAGC	1 cut(s)	180
BsuRI	GGCC	3 cut(s)	84, 320, 337
BtgI	CCRYGG	2 cut(s)	140, 257
BtsCI	GGATG	1 cut(s)	178
Cac8I	GCNNGC	2 cut(s)	82, 261
CfoI	GCGC	1 cut(s)	265
Cfr10I	RCCGGY	1 cut(s)	80
Cfr13I	GGNCC	3 cut(s)	137, 185, 318
Cfr42I	CCGCGG	2 cut(s)	143, 260
Cfr9I	CCCGGG	1 cut(s)	197
CpoI	CGGWCCG	1 cut(s)	137
CseI	GACGC	1 cut(s)	213
CspI	CGGWCCG	1 cut(s)	137
DdeI	CTNAG	2 cut(s)	327, 332
DpnI	GATC	2 cut(s)	180, 311
DpnII	GATC	2 cut(s)	178, 309
Eco130I	CCWWGG	1 cut(s)	321
Eco147I	AGGCCT	1 cut(s)	337
Eco31I	GGTCTC	2 cut(s)	118, 197
Eco47I	GGWCC	2 cut(s)	137, 185
Eco88I	CYCGRG	1 cut(s)	197
EcoRII	CCWGG	1 cut(s)	237
EcoT14I	CCWWGG	1 cut(s)	321
ErhI	CCWWGG	1 cut(s)	321
FaqI	GGGAC	1 cut(s)	104
FauI	CCCGC	1 cut(s)	252
FbaI	TGATCA	1 cut(s)	309
Fnu4HI	GCNGC	2 cut(s)	194, 257
FokI	GGATG	1 cut(s)	185
Fsp4HI	GCNGC	2 cut(s)	194, 257
FspBI	CTAG	2 cut(s)	153, 390
GlaI	GCGC	1 cut(s)	264
GluI	GCNGC	2 cut(s)	194, 257
HaeII	RGCGCY	1 cut(s)	266
HaeIII	GGCC	3 cut(s)	84, 320, 337
HapII	CCGG	5 cut(s)	81, 110, 135, 198, 207
HgaI	GACGC	1 cut(s)	213
HhaI	GCGC	1 cut(s)	265
Hin6I	GCGC	1 cut(s)	263
HinP1I	GCGC	1 cut(s)	263
HinfI	GANTC	2 cut(s)	164, 229
HpaII	CCGG	5 cut(s)	81, 110, 135, 198, 207
HphI	GGTGA	1 cut(s)	82
Hpy188I	TCNGA	2 cut(s)	169, 276
Hpy188III	TCNNGA	2 cut(s)	153, 313
Hpy99I	CGWCG	1 cut(s)	229
HpyAV	CCTTC	1 cut(s)	348
HpyCH4III	ACNGT	2 cut(s)	185, 370
HpyCH4IV	ACGT	1 cut(s)	344
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 262
HpyF3I	CTNAG	2 cut(s)	327, 332
HpySE526I	ACGT	1 cut(s)	344
HspAI	GCGC	1 cut(s)	263
KroI	GCCGGC	1 cut(s)	80
KroNI	GCCGGC	1 cut(s)	82
Ksp22I	TGATCA	1 cut(s)	309
KspI	CCGCGG	2 cut(s)	143, 260
Kzo9I	GATC	2 cut(s)	178, 309
LmnI	GCTCC	1 cut(s)	292
LpnPI	CCDG	8 cut(s)	94, 123, 148, 211, 220, 224, 251, 319
Lsp1109I	GCAGC	1 cut(s)	180
MaeI	CTAG	2 cut(s)	153, 390
MaeII	ACGT	1 cut(s)	344
MalI	GATC	2 cut(s)	180, 311
MboI	GATC	2 cut(s)	178, 309
MboII	GAAGA	1 cut(s)	188
MhlI	GDGCHC	1 cut(s)	380
MluCI	AATT	1 cut(s)	125
MmeI	TCCRAC	1 cut(s)	230
MroNI	GCCGGC	1 cut(s)	80
MspA1I	CMGCKG	2 cut(s)	142, 259
MspI	CCGG	5 cut(s)	81, 110, 135, 198, 207
MspR9I	CCNGG	4 cut(s)	110, 198, 199, 239
MvaI	CCWGG	1 cut(s)	239
MvnI	CGCG	2 cut(s)	142, 259
MwoI	GCNNNNNNNGC	2 cut(s)	26, 262
NaeI	GCCGGC	1 cut(s)	82
NciI	CCSGG	3 cut(s)	110, 198, 199
NdeII	GATC	2 cut(s)	178, 309
NgoMIV	GCCGGC	1 cut(s)	80
PceI	AGGCCT	1 cut(s)	337
PdiI	GCCGGC	1 cut(s)	82
PfeI	GAWTC	2 cut(s)	164, 229
PkrI	GCNGC	2 cut(s)	195, 258
Psp6I	CCWGG	1 cut(s)	237
PspGI	CCWGG	1 cut(s)	237
PspPI	GGNCC	3 cut(s)	137, 185, 318
Rsr2I	CGGWCCG	1 cut(s)	137
RsrII	CGGWCCG	1 cut(s)	137
SacII	CCGCGG	2 cut(s)	143, 260
SatI	GCNGC	2 cut(s)	194, 257
Sau3AI	GATC	2 cut(s)	178, 309
Sau96I	GGNCC	3 cut(s)	137, 185, 318
ScrFI	CCNGG	4 cut(s)	110, 198, 199, 239
SduI	GDGCHC	1 cut(s)	380
SetI	ASST	6 cut(s)	95, 218, 243, 281, 333, 347
Sfr303I	CCGCGG	2 cut(s)	143, 260
SgrBI	CCGCGG	2 cut(s)	143, 260
SinI	GGWCC	2 cut(s)	137, 185
SmaI	CCCGGG	1 cut(s)	199
Sse9I	AATT	1 cut(s)	125
SseBI	AGGCCT	1 cut(s)	337
SsiI	CCGC	5 cut(s)	140, 142, 257, 259, 290
SspMI	CTAG	2 cut(s)	153, 390
StuI	AGGCCT	1 cut(s)	337
StyD4I	CCNGG	4 cut(s)	108, 196, 197, 237
StyI	CCWWGG	1 cut(s)	321
TaaI	ACNGT	2 cut(s)	185, 370
TaiI	ACGT	1 cut(s)	347
TaqI	TCGA	3 cut(s)	146, 162, 227
TasI	AATT	1 cut(s)	125
TauI	GCSGC	1 cut(s)	259
TfiI	GAWTC	2 cut(s)	164, 229
TseI	GCWGC	1 cut(s)	193
TspDTI	ATGAA	4 cut(s)	17, 64, 189, 208
TspGWI	ACGGA	2 cut(s)	106, 222
TspMI	CCCGGG	1 cut(s)	197
VpaK11BI	GGWCC	2 cut(s)	137, 185
XbaI	TCTAGA	1 cut(s)	152
XcmI	CCANNNNNNNNNTGG	1 cut(s)	31
XmaI	CCCGGG	1 cut(s)	197
XspI	CTAG	2 cut(s)	153, 390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.