Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0010783

Physical Location & Seq

Genomic Coordinates Forward (+)

20259120 .. 20263397

Gene Structure 4278 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1096100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGAAAGTGAAAGCAAAGAGCTCCAGAGCAAAGTTGGGCTTACCCACCGTCTTCCTCCTTTGCTCCCTCTTCTTCTTCGCCGGTTTATTCATCTCCACCCTCCTCTCCCATGCCTCCGTCCCTCGCTCCGTCTCCAGAACTCTGGAATCCGAAGACGACGAAGATCACGGTCCAATGATGCCGGGCGACACCGGAGACAGCTTTATTCAGTCCATTCCATTCCAGGTTTTGAGTTGGAGACCGCGGGCTCTGTATTTTCCGAGATTTGCAACTGCCGAGCAATGCGAAAGCGTGATTGAGATGGCGAAGACGAAGCTCCGGCCGTCCACACTGGCATTGCGAAAGGGAGAGACTGCTGAGAGCACAAAGGGGACTCGAACAAGTTCAGGCACATTTATTAGTGCATCAGAAGATGATAGCGGAGTCCTGGATATTATTGAGGAAAAGATTGCCAGGGCTACAATGTTACAAAGAGTCCATGGCGAGGCATTCAACGTTTTGCGGTATGAGATTGGCCAGAAGTATGATTCACATTATGATGCATTCAATCCAACGGAATATGGTCAACAGAAAAGCCAAAGATTTGCTTCCTTCTTGTTGTATCTATCCGATGTAGAAGAAGGTGGAGAAACCATGTTCCCTTATGAGAACGGTGCAGAGATGGGTTCGAGCTATGATTACAAGAAATGCATTGGTTTAAAAATTATGCCCAGGCAAGGGGATGGTCTTTTATTTTATTCAGTGTTTCCAAACGGCACAATTGATCCGACATCTCTTCACGGAAGCTGCCCGGTGATCAAAGGGGAAAAGTGGGTTGCAACAAAGTGGATTAGAAACCAAGAAGATATGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

2OG-FeII_Oxy_3

Protein Analysis

285

Amino Acids

31.74

Weight (kDa)

5.66

Isoelectric Point (pI)

44.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	163 - 278	1.4e-06	2OG-Fe(II) oxygenase superfamily
2OG-FeII_Oxy_3	PF13640	165 - 278	9.2e-16	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33910
fragaria_vesca	FvH4_2g03890 FvH4_2g03890
malus_domestica	MD05G1096100.v1.1 MD10G1102300.v1.1
prunus_persica	Prupe.8G140500_v2.0.a1
pyrus_communis	pycom05g09490 pycom10g08800
rosa_chinensis	RchiOBHm_Chr6g0252911
rosa_laevigata	RLG00000015049 RLG00000032764
rosa_multiflora	Rmu_co8070424.1_g000001 Rmu_sc0000829.1_g000001
rosa_roxburghii	Rroxscaffold_7G00212300
rosa_rugosa	Rorug05G0540000
rosa_samantha	Rh6AG055700 Rh6BG050000 Rh6CG048400 Rh6DG044000
rosa_wichuraiana	Rw6G005040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	244
AciI	CCGC	4 cut(s)	242, 244, 420, 502
AclI	AACGTT	1 cut(s)	495
AclWI	GGATC	1 cut(s)	758
AcoI	YGGCCR	2 cut(s)	320, 514
AfiI	CCNNNNNNNGG	3 cut(s)	484, 716, 717
AgsI	TTSAA	2 cut(s)	493, 547
AjnI	CCWGG	4 cut(s)	222, 426, 452, 710
AluBI	AGCT	5 cut(s)	21, 201, 316, 672, 786
AluI	AGCT	5 cut(s)	21, 201, 316, 672, 786
Alw21I	GWGCWC	2 cut(s)	23, 365
Alw26I	GTCTC	4 cut(s)	136, 189, 232, 344
AlwI	GGATC	1 cut(s)	758
AoxI	GGCC	2 cut(s)	320, 514
ApeKI	GCWGC	1 cut(s)	786
Asp700I	GAANNNNTTC	1 cut(s)	382
AspS9I	GGNCC	1 cut(s)	170
AsuC2I	CCSGG	2 cut(s)	183, 791
AsuHPI	GGTGA	1 cut(s)	805
AvaII	GGWCC	1 cut(s)	170
BalI	TGGCCA	1 cut(s)	516
BanII	GRGCYC	2 cut(s)	23, 250
BbsI	GAAGAC	3 cut(s)	43, 159, 314
Bbv12I	GWGCWC	2 cut(s)	23, 365
BbvI	GCAGC	1 cut(s)	773
BccI	CCATC	3 cut(s)	295, 655, 716
BceAI	ACGGC	2 cut(s)	307, 769
BciT130I	CCWGG	4 cut(s)	224, 428, 454, 712
BclI	TGATCA	1 cut(s)	795
BcnI	CCSGG	2 cut(s)	183, 791
BcoDI	GTCTC	4 cut(s)	136, 189, 232, 344
BisI	GCNGC	1 cut(s)	787
BlsI	GCNGC	1 cut(s)	788
Bme1390I	CCNGG	6 cut(s)	183, 224, 428, 454, 712, 791
Bme18I	GGWCC	1 cut(s)	170
BmgT120I	GGNCC	1 cut(s)	170
BmrFI	CCNGG	6 cut(s)	183, 224, 428, 454, 712, 791
BmsI	GCATC	3 cut(s)	168, 413, 529
BpiI	GAAGAC	3 cut(s)	43, 159, 314
BpmI	CTGGAG	2 cut(s)	7, 118
BpuMI	CCSGG	2 cut(s)	183, 791
BsaI	GGTCTC	1 cut(s)	232
BsaJI	CCNNGG	4 cut(s)	242, 453, 478, 710
BsaWI	WCCGGW	1 cut(s)	191
Bsc4I	CCNNNNNNNGG	3 cut(s)	484, 716, 717
Bse118I	RCCGGY	1 cut(s)	80
Bse1I	ACTGG	1 cut(s)	336
Bse3DI	GCAATG	2 cut(s)	287, 335
BseBI	CCWGG	4 cut(s)	224, 428, 454, 712
BseDI	CCNNGG	4 cut(s)	242, 453, 478, 710
BseGI	GGATG	1 cut(s)	727
BseLI	CCNNNNNNNGG	3 cut(s)	484, 716, 717
BseMI	GCAATG	2 cut(s)	287, 335
BseMII	CTCAG	1 cut(s)	348
BseNI	ACTGG	1 cut(s)	336
BseRI	GAGGAG	1 cut(s)	92
BseX3I	CGGCCG	1 cut(s)	320
BseXI	GCAGC	1 cut(s)	773
BsgI	GTGCAG	1 cut(s)	675
Bsh1236I	CGCG	1 cut(s)	244
Bsh1285I	CGRYCG	1 cut(s)	323
BshFI	GGCC	2 cut(s)	322, 516
BsiEI	CGRYCG	1 cut(s)	323
BsiHKAI	GWGCWC	2 cut(s)	23, 365
BsiSI	CCGG	5 cut(s)	81, 182, 192, 319, 791
BslFI	GGGAC	2 cut(s)	104, 385
BslI	CCNNNNNNNGG	3 cut(s)	484, 716, 717
BsmAI	GTCTC	4 cut(s)	136, 189, 232, 344
BsmBI	CGTCTC	1 cut(s)	136
BsmFI	GGGAC	2 cut(s)	104, 385
BsmI	GAATGC	2 cut(s)	488, 542
BsnI	GGCC	2 cut(s)	322, 516
Bso31I	GGTCTC	1 cut(s)	232
Bsp1286I	GDGCHC	3 cut(s)	23, 250, 365
Bsp143I	GATC	3 cut(s)	163, 763, 795
Bsp19I	CCATGG	1 cut(s)	478
BspACI	CCGC	4 cut(s)	242, 244, 420, 502
BspANI	GGCC	2 cut(s)	322, 516
BspCNI	CTCAG	1 cut(s)	349
BspFNI	CGCG	1 cut(s)	244
BspPI	GGATC	1 cut(s)	758
BspTNI	GGTCTC	1 cut(s)	232
BsrDI	GCAATG	2 cut(s)	287, 335
BsrFI	RCCGGY	1 cut(s)	80
BsrI	ACTGG	1 cut(s)	336
BssAI	RCCGGY	1 cut(s)	80
BssECI	CCNNGG	4 cut(s)	242, 453, 478, 710
BssMI	GATC	3 cut(s)	163, 763, 795
BssT1I	CCWWGG	1 cut(s)	478
Bst2UI	CCWGG	4 cut(s)	224, 428, 454, 712
Bst4CI	ACNGT	3 cut(s)	49, 170, 653
Bst6I	CTCTTC	2 cut(s)	74, 780
BstC8I	GCNNGC	1 cut(s)	246
BstDEI	CTNAG	1 cut(s)	357
BstDSI	CCRYGG	2 cut(s)	242, 478
BstF5I	GGATG	1 cut(s)	727
BstFNI	CGCG	1 cut(s)	244
BstKTI	GATC	3 cut(s)	166, 766, 798
BstMAI	GTCTC	4 cut(s)	136, 189, 232, 344
BstMBI	GATC	3 cut(s)	163, 763, 795
BstMCI	CGRYCG	1 cut(s)	323
BstNI	CCWGG	4 cut(s)	224, 428, 454, 712
BstSCI	CCNGG	6 cut(s)	181, 222, 426, 452, 710, 789
BstUI	CGCG	1 cut(s)	244
BstV1I	GCAGC	1 cut(s)	773
BstV2I	GAAGAC	3 cut(s)	43, 159, 314
BstXI	CCANNNNNNTGG	1 cut(s)	142
BstZI	CGGCCG	1 cut(s)	320
BsuRI	GGCC	2 cut(s)	322, 516
BtgI	CCRYGG	2 cut(s)	242, 478
BtsCI	GGATG	1 cut(s)	727
BtsIMutI	CAGTG	2 cut(s)	329, 747
Cac8I	GCNNGC	1 cut(s)	246
Cfr10I	RCCGGY	1 cut(s)	80
Cfr13I	GGNCC	1 cut(s)	170
Cfr42I	CCGCGG	1 cut(s)	245
CviAII	CATG	3 cut(s)	110, 479, 634
DdeI	CTNAG	1 cut(s)	357
DpnI	GATC	3 cut(s)	165, 765, 797
DpnII	GATC	3 cut(s)	163, 763, 795
DraI	TTTAAA	1 cut(s)	699
EaeI	YGGCCR	2 cut(s)	320, 514
EagI	CGGCCG	1 cut(s)	320
Eam1104I	CTCTTC	2 cut(s)	74, 780
EarI	CTCTTC	2 cut(s)	74, 780
Ecl136II	GAGCTC	1 cut(s)	21
EclXI	CGGCCG	1 cut(s)	320
Eco130I	CCWWGG	1 cut(s)	478
Eco24I	GRGCYC	2 cut(s)	23, 250
Eco31I	GGTCTC	1 cut(s)	232
Eco47I	GGWCC	1 cut(s)	170
Eco52I	CGGCCG	1 cut(s)	320
Eco53kI	GAGCTC	1 cut(s)	21
EcoICRI	GAGCTC	1 cut(s)	21
EcoRII	CCWGG	4 cut(s)	222, 426, 452, 710
EcoT14I	CCWWGG	1 cut(s)	478
EcoT22I	ATGCAT	2 cut(s)	544, 692
EcoT38I	GRGCYC	2 cut(s)	23, 250
ErhI	CCWWGG	1 cut(s)	478
Esp3I	CGTCTC	1 cut(s)	136
FaeI	CATG	3 cut(s)	113, 482, 637
FalI	AAGNNNNNCTT	4 cut(s)	23, 55, 571, 603
FaqI	GGGAC	2 cut(s)	104, 385
FatI	CATG	3 cut(s)	109, 478, 633
FauI	CCCGC	1 cut(s)	237
FbaI	TGATCA	1 cut(s)	795
Fnu4HI	GCNGC	1 cut(s)	787
FokI	GGATG	1 cut(s)	734
FriOI	GRGCYC	2 cut(s)	23, 250
Fsp4HI	GCNGC	1 cut(s)	787
GluI	GCNGC	1 cut(s)	787
GsuI	CTGGAG	2 cut(s)	7, 118
HaeIII	GGCC	2 cut(s)	322, 516
HapII	CCGG	5 cut(s)	81, 182, 192, 319, 791
Hin1II	CATG	3 cut(s)	113, 482, 637
HincII	GTYRAC	1 cut(s)	566
HindII	GTYRAC	1 cut(s)	566
HinfI	GANTC	5 cut(s)	146, 373, 423, 474, 527
HpaII	CCGG	5 cut(s)	81, 182, 192, 319, 791
HphI	GGTGA	1 cut(s)	805
Hpy166II	GTNNAC	2 cut(s)	327, 566
Hpy188I	TCNGA	5 cut(s)	151, 261, 409, 610, 768
Hpy188III	TCNNGA	3 cut(s)	24, 135, 143
Hpy8I	GTNNAC	2 cut(s)	327, 566
Hpy99I	CGWCG	1 cut(s)	161
HpyAV	CCTTC	2 cut(s)	601, 614
HpyCH4III	ACNGT	3 cut(s)	49, 170, 653
HpyCH4IV	ACGT	1 cut(s)	495
HpyCH4V	TGCA	6 cut(s)	269, 404, 542, 656, 690, 818
HpyF3I	CTNAG	1 cut(s)	357
HpySE526I	ACGT	1 cut(s)	495
Hsp92II	CATG	3 cut(s)	113, 482, 637
Ksp22I	TGATCA	1 cut(s)	795
KspI	CCGCGG	1 cut(s)	245
Kzo9I	GATC	3 cut(s)	163, 763, 795
LmnI	GCTCC	4 cut(s)	26, 68, 131, 321
Lsp1109I	GCAGC	1 cut(s)	773
LweI	GCATC	3 cut(s)	168, 413, 529
MaeII	ACGT	1 cut(s)	495
MaeIII	GTNAC	1 cut(s)	465
MalI	GATC	3 cut(s)	165, 765, 797
MboI	GATC	3 cut(s)	163, 763, 795
MfeI	CAATTG	1 cut(s)	759
MhlI	GDGCHC	3 cut(s)	23, 250, 365
MlsI	TGGCCA	1 cut(s)	516
MluCI	AATT	2 cut(s)	702, 759
MluNI	TGGCCA	1 cut(s)	516
MlyI	GAGTC	3 cut(s)	367, 432, 483
MmeI	TCCRAC	3 cut(s)	215, 575, 791
MnlI	CCTC	8 cut(s)	65, 77, 110, 113, 124, 132, 433, 478
Mox20I	TGGCCA	1 cut(s)	516
Mph1103I	ATGCAT	2 cut(s)	544, 692
MroXI	GAANNNNTTC	1 cut(s)	382
MscI	TGGCCA	1 cut(s)	516
MseI	TTAA	1 cut(s)	698
MslI	CAYNNNNRTG	1 cut(s)	537
Msp20I	TGGCCA	1 cut(s)	516
MspA1I	CMGCKG	1 cut(s)	244
MspI	CCGG	5 cut(s)	81, 182, 192, 319, 791
MspR9I	CCNGG	6 cut(s)	183, 224, 428, 454, 712, 791
MunI	CAATTG	1 cut(s)	759
Mva1269I	GAATGC	2 cut(s)	488, 542
MvaI	CCWGG	4 cut(s)	224, 428, 454, 712
MvnI	CGCG	1 cut(s)	244
NciI	CCSGG	2 cut(s)	183, 791
NcoI	CCATGG	1 cut(s)	478
NdeII	GATC	3 cut(s)	163, 763, 795
NlaIII	CATG	3 cut(s)	113, 482, 637
NmeAIII	GCCGAG	1 cut(s)	301
NsiI	ATGCAT	2 cut(s)	544, 692
PctI	GAATGC	2 cut(s)	488, 542
PdmI	GAANNNNTTC	1 cut(s)	382
PfeI	GAWTC	2 cut(s)	146, 527
PfoI	TCCNGGA	1 cut(s)	426
PkrI	GCNGC	1 cut(s)	788
PleI	GAGTC	3 cut(s)	367, 431, 482
PpsI	GAGTC	3 cut(s)	367, 431, 482
Psp124BI	GAGCTC	1 cut(s)	23
Psp1406I	AACGTT	1 cut(s)	495
Psp6I	CCWGG	4 cut(s)	222, 426, 452, 710
PspGI	CCWGG	4 cut(s)	222, 426, 452, 710
PspPI	GGNCC	1 cut(s)	170
RseI	CAYNNNNRTG	1 cut(s)	537
SacI	GAGCTC	1 cut(s)	23
SacII	CCGCGG	1 cut(s)	245
SaqAI	TTAA	1 cut(s)	698
SatI	GCNGC	1 cut(s)	787
Sau3AI	GATC	3 cut(s)	163, 763, 795
Sau96I	GGNCC	1 cut(s)	170
SchI	GAGTC	3 cut(s)	367, 432, 483
ScrFI	CCNGG	6 cut(s)	183, 224, 428, 454, 712, 791
SduI	GDGCHC	3 cut(s)	23, 250, 365
SetI	ASST	8 cut(s)	23, 203, 228, 318, 498, 625, 674, 788
SfaNI	GCATC	3 cut(s)	168, 413, 529
Sfr303I	CCGCGG	1 cut(s)	245
SgrBI	CCGCGG	1 cut(s)	245
SinI	GGWCC	1 cut(s)	170
SmiMI	CAYNNNNRTG	1 cut(s)	537
Sse9I	AATT	2 cut(s)	702, 759
SsiI	CCGC	4 cut(s)	242, 244, 420, 502
SstI	GAGCTC	1 cut(s)	23
StyD4I	CCNGG	6 cut(s)	181, 222, 426, 452, 710, 789
StyI	CCWWGG	1 cut(s)	478
TaaI	ACNGT	3 cut(s)	49, 170, 653
TaiI	ACGT	1 cut(s)	498
TaqI	TCGA	2 cut(s)	376, 668
TasI	AATT	2 cut(s)	702, 759
TfiI	GAWTC	2 cut(s)	146, 527
Tru1I	TTAA	1 cut(s)	698
Tru9I	TTAA	1 cut(s)	698
TscAI	CASTG	2 cut(s)	336, 747
TseI	GCWGC	1 cut(s)	786
TspDTI	ATGAA	2 cut(s)	17, 79
TspGWI	ACGGA	4 cut(s)	106, 118, 569, 795
TspRI	CASTG	2 cut(s)	336, 747
VpaK11BI	GGWCC	1 cut(s)	170
XcmI	CCANNNNNNNNNTGG	1 cut(s)	31
XmnI	GAANNNNTTC	1 cut(s)	382
Zsp2I	ATGCAT	2 cut(s)	544, 692

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.